data_6M3Z # _model_server_result.job_id jALqSW0DEqnE0H4GH3_J9g _model_server_result.datetime_utc '2024-10-14 03:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":707}' # _entry.id 6M3Z # _exptl.entry_id 6M3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M3Z _cell.length_a 96.997 _cell.length_b 141.599 _cell.length_c 168.249 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale2 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A OD1 ASP 22 A ASP 46 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc5 A OD1 ASN 25 A ASN 49 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc6 A O SER 255 A SER 320 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc7 A OG SER 255 A SER 320 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 562 n n CBA CAB Y01 sing 563 n n CBA CAN Y01 sing 564 n n CAN CAJ Y01 sing 565 n n CAJ CAO Y01 sing 566 n n CAO CBB Y01 sing 567 n n CBB CAC Y01 sing 568 n n CBB CBE Y01 sing 569 n n CBE CAP Y01 sing 570 n n CBE CBI Y01 sing 571 n n CAP CAQ Y01 sing 572 n n CAQ CBG Y01 sing 573 n n CBG CBI Y01 sing 574 n n CBG CBD Y01 sing 575 n n CBI CAE Y01 sing 576 n n CBI CAU Y01 sing 577 n n CAU CAS Y01 sing 578 n n CAS CBF Y01 sing 579 n n CBF CBD Y01 sing 580 n n CBF CBH Y01 sing 581 n n CBD CAK Y01 sing 582 n n CAK CAI Y01 sing 583 n n CAI CAZ Y01 doub 584 n n CAZ CAV Y01 sing 585 n n CAZ CBH Y01 sing 586 n n CAV CBC Y01 sing 587 n n CBH CAD Y01 sing 588 n n CBH CAT Y01 sing 589 n n CAT CAR Y01 sing 590 n n CAR CBC Y01 sing 591 n n CBC OAW Y01 sing 592 n n OAW CAY Y01 sing 593 n n CAY OAG Y01 doub 594 n n CAY CAM Y01 sing 595 n n CAM CAL Y01 sing 596 n n CAL CAX Y01 sing 597 n n CAX OAH Y01 sing 598 n n CAX OAF Y01 doub 599 n n CAA HAA1 Y01 sing 600 n n CAA HAA2 Y01 sing 601 n n CAA HAA3 Y01 sing 602 n n CBA HBA Y01 sing 603 n n CAB HAB1 Y01 sing 604 n n CAB HAB2 Y01 sing 605 n n CAB HAB3 Y01 sing 606 n n CAN HAN1 Y01 sing 607 n n CAN HAN2 Y01 sing 608 n n CAJ HAJ1 Y01 sing 609 n n CAJ HAJ2 Y01 sing 610 n n CAO HAO1 Y01 sing 611 n n CAO HAO2 Y01 sing 612 n n CBB HBB Y01 sing 613 n n CAC HAC1 Y01 sing 614 n n CAC HAC2 Y01 sing 615 n n CAC HAC3 Y01 sing 616 n n CBE HBE Y01 sing 617 n n CAP HAP1 Y01 sing 618 n n CAP HAP2 Y01 sing 619 n n CAQ HAQ1 Y01 sing 620 n n CAQ HAQ2 Y01 sing 621 n n CBG HBG Y01 sing 622 n n CBD HBD Y01 sing 623 n n CAE HAE1 Y01 sing 624 n n CAE HAE2 Y01 sing 625 n n CAE HAE3 Y01 sing 626 n n CAU HAU1 Y01 sing 627 n n CAU HAU2 Y01 sing 628 n n CAS HAS1 Y01 sing 629 n n CAS HAS2 Y01 sing 630 n n CBF HBF Y01 sing 631 n n CAK HAK1 Y01 sing 632 n n CAK HAK2 Y01 sing 633 n n CAI HAI Y01 sing 634 n n CAV HAV1 Y01 sing 635 n n CAV HAV2 Y01 sing 636 n n CBC HBC Y01 sing 637 n n CAD HAD1 Y01 sing 638 n n CAD HAD2 Y01 sing 639 n n CAD HAD3 Y01 sing 640 n n CAT HAT1 Y01 sing 641 n n CAT HAT2 Y01 sing 642 n n CAR HAR1 Y01 sing 643 n n CAR HAR2 Y01 sing 644 n n CAM HAM1 Y01 sing 645 n n CAM HAM2 Y01 sing 646 n n CAL HAL1 Y01 sing 647 n n CAL HAL2 Y01 sing 648 n n OAH HAH Y01 sing 649 n n # _atom_sites.entry_id 6M3Z _atom_sites.fract_transf_matrix[1][1] 0.01031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 F0F A 1 701 1 F0F MLN . G 6 GOL A 1 702 1 GOL GOL . H 7 D10 A 1 703 1 D10 D10 . I 8 CL A 1 704 1 CL CL . J 9 NA A 1 705 2 NA NA . K 9 NA A 1 706 3 NA NA . L 10 Y01 A 1 707 1 Y01 Y01 . M 11 CLR A 1 710 1 CLR CLR . N 12 HOH A 1 801 16 HOH HOH . N 12 HOH A 2 802 4 HOH HOH . N 12 HOH A 3 803 15 HOH HOH . N 12 HOH A 4 804 17 HOH HOH . N 12 HOH A 5 805 21 HOH HOH . N 12 HOH A 6 806 18 HOH HOH . N 12 HOH A 7 807 5 HOH HOH . N 12 HOH A 8 808 1 HOH HOH . O 12 HOH L 1 301 8 HOH HOH . O 12 HOH L 2 302 14 HOH HOH . O 12 HOH L 3 303 13 HOH HOH . O 12 HOH L 4 304 6 HOH HOH . O 12 HOH L 5 305 2 HOH HOH . O 12 HOH L 6 306 3 HOH HOH . O 12 HOH L 7 307 7 HOH HOH . O 12 HOH L 8 308 9 HOH HOH . P 12 HOH H 1 301 19 HOH HOH . P 12 HOH H 2 302 20 HOH HOH . P 12 HOH H 3 303 11 HOH HOH . P 12 HOH H 4 304 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 10 6.643 0.983 39.823 1 77.14 ? CAA Y01 707 A 1 HETATM 2 C CBA Y01 . . . L 10 7.787 0.194 40.459 1 94.1 ? CBA Y01 707 A 1 HETATM 3 C CAB Y01 . . . L 10 8.604 -0.627 39.446 1 90.13 ? CAB Y01 707 A 1 HETATM 4 C CAN Y01 . . . L 10 7.328 -0.622 41.692 1 99.41 ? CAN Y01 707 A 1 HETATM 5 C CAJ Y01 . . . L 10 6.018 -1.424 41.491 1 103.86 ? CAJ Y01 707 A 1 HETATM 6 C CAO Y01 . . . L 10 5.218 -1.686 42.789 1 92.6 ? CAO Y01 707 A 1 HETATM 7 C CBB Y01 . . . L 10 5.184 -0.407 43.664 1 97.87 ? CBB Y01 707 A 1 HETATM 8 C CAC Y01 . . . L 10 4.515 0.795 42.944 1 102.09 ? CAC Y01 707 A 1 HETATM 9 C CBE Y01 . . . L 10 4.772 -0.641 45.168 1 102.4 ? CBE Y01 707 A 1 HETATM 10 C CAP Y01 . . . L 10 4.778 0.735 45.907 1 107.44 ? CAP Y01 707 A 1 HETATM 11 C CAQ Y01 . . . L 10 3.883 0.569 47.138 1 103.67 ? CAQ Y01 707 A 1 HETATM 12 C CBG Y01 . . . L 10 3.682 -0.94 47.185 1 102.03 ? CBG Y01 707 A 1 HETATM 13 C CBI Y01 . . . L 10 3.52 -1.413 45.726 1 96.29 ? CBI Y01 707 A 1 HETATM 14 C CAE Y01 . . . L 10 2.156 -1.012 45.086 1 94.97 ? CAE Y01 707 A 1 HETATM 15 C CAU Y01 . . . L 10 3.609 -2.953 45.777 1 91.09 ? CAU Y01 707 A 1 HETATM 16 C CAS Y01 . . . L 10 2.501 -3.532 46.687 1 91.14 ? CAS Y01 707 A 1 HETATM 17 C CBF Y01 . . . L 10 2.574 -3.004 48.16 1 100.84 ? CBF Y01 707 A 1 HETATM 18 C CBD Y01 . . . L 10 2.636 -1.442 48.189 1 101.11 ? CBD Y01 707 A 1 HETATM 19 C CAK Y01 . . . L 10 3.079 -0.94 49.572 1 98.43 ? CAK Y01 707 A 1 HETATM 20 C CAI Y01 . . . L 10 2.331 -1.644 50.659 1 104.89 ? CAI Y01 707 A 1 HETATM 21 C CAZ Y01 . . . L 10 1.374 -2.559 50.371 1 105.15 ? CAZ Y01 707 A 1 HETATM 22 C CAV Y01 . . . L 10 0.405 -2.917 51.475 1 101.6 ? CAV Y01 707 A 1 HETATM 23 C CBH Y01 . . . L 10 1.424 -3.501 49.139 1 101.05 ? CBH Y01 707 A 1 HETATM 24 C CAD Y01 . . . L 10 0.041 -3.41 48.439 1 97.43 ? CAD Y01 707 A 1 HETATM 25 C CAT Y01 . . . L 10 1.593 -4.998 49.628 1 97.2 ? CAT Y01 707 A 1 HETATM 26 C CAR Y01 . . . L 10 0.786 -5.377 50.896 1 97.26 ? CAR Y01 707 A 1 HETATM 27 C CBC Y01 . . . L 10 0.854 -4.291 52.007 1 98.94 ? CBC Y01 707 A 1 HETATM 28 O OAW Y01 . . . L 10 0.033 -4.618 53.13 1 102.31 ? OAW Y01 707 A 1 HETATM 29 C CAY Y01 . . . L 10 0.39 -5.598 54.064 1 108.29 ? CAY Y01 707 A 1 HETATM 30 O OAG Y01 . . . L 10 1.564 -6.065 54.133 1 106.88 ? OAG Y01 707 A 1 HETATM 31 C CAM Y01 . . . L 10 -0.655 -6.134 54.98 1 108.46 ? CAM Y01 707 A 1 HETATM 32 C CAL Y01 . . . L 10 -0.815 -7.635 54.689 1 106.58 ? CAL Y01 707 A 1 HETATM 33 C CAX Y01 . . . L 10 -2.165 -8.028 55.216 1 113.82 ? CAX Y01 707 A 1 HETATM 34 O OAH Y01 . . . L 10 -2.628 -9.329 55.013 1 112.7 ? OAH Y01 707 A 1 HETATM 35 O OAF Y01 . . . L 10 -2.858 -7.153 55.835 1 109.63 ? OAF Y01 707 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #