data_6M3Z # _model_server_result.job_id OtLcZf2TcYTOho1Pckn3tw _model_server_result.datetime_utc '2024-11-24 21:58:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":710}' # _entry.id 6M3Z # _exptl.entry_id 6M3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M3Z _cell.length_a 96.997 _cell.length_b 141.599 _cell.length_c 168.249 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale2 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A OD1 ASP 22 A ASP 46 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc5 A OD1 ASN 25 A ASN 49 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc6 A O SER 255 A SER 320 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc7 A OG SER 255 A SER 320 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6M3Z _atom_sites.fract_transf_matrix[1][1] 0.01031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 F0F A 1 701 1 F0F MLN . G 6 GOL A 1 702 1 GOL GOL . H 7 D10 A 1 703 1 D10 D10 . I 8 CL A 1 704 1 CL CL . J 9 NA A 1 705 2 NA NA . K 9 NA A 1 706 3 NA NA . L 10 Y01 A 1 707 1 Y01 Y01 . M 11 CLR A 1 710 1 CLR CLR . N 12 HOH A 1 801 16 HOH HOH . N 12 HOH A 2 802 4 HOH HOH . N 12 HOH A 3 803 15 HOH HOH . N 12 HOH A 4 804 17 HOH HOH . N 12 HOH A 5 805 21 HOH HOH . N 12 HOH A 6 806 18 HOH HOH . N 12 HOH A 7 807 5 HOH HOH . N 12 HOH A 8 808 1 HOH HOH . O 12 HOH L 1 301 8 HOH HOH . O 12 HOH L 2 302 14 HOH HOH . O 12 HOH L 3 303 13 HOH HOH . O 12 HOH L 4 304 6 HOH HOH . O 12 HOH L 5 305 2 HOH HOH . O 12 HOH L 6 306 3 HOH HOH . O 12 HOH L 7 307 7 HOH HOH . O 12 HOH L 8 308 9 HOH HOH . P 12 HOH H 1 301 19 HOH HOH . P 12 HOH H 2 302 20 HOH HOH . P 12 HOH H 3 303 11 HOH HOH . P 12 HOH H 4 304 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . M 11 6.82 -17.62 34.952 1 86.12 ? C1 CLR 710 A 1 HETATM 2 C C2 CLR . . . M 11 5.995 -18.586 35.838 1 90.81 ? C2 CLR 710 A 1 HETATM 3 C C3 CLR . . . M 11 5.076 -17.933 36.894 1 90.41 ? C3 CLR 710 A 1 HETATM 4 C C4 CLR . . . M 11 4.22 -16.849 36.218 1 93.58 ? C4 CLR 710 A 1 HETATM 5 C C5 CLR . . . M 11 5.008 -15.915 35.302 1 91.2 ? C5 CLR 710 A 1 HETATM 6 C C6 CLR . . . M 11 4.476 -14.695 35.096 1 92.27 ? C6 CLR 710 A 1 HETATM 7 C C7 CLR . . . M 11 5.259 -13.543 34.511 1 89.96 ? C7 CLR 710 A 1 HETATM 8 C C8 CLR . . . M 11 6.423 -13.91 33.57 1 85.62 ? C8 CLR 710 A 1 HETATM 9 C C9 CLR . . . M 11 7.091 -15.242 34.009 1 87.91 ? C9 CLR 710 A 1 HETATM 10 C C10 CLR . . . M 11 6.064 -16.415 34.312 1 89.71 ? C10 CLR 710 A 1 HETATM 11 C C11 CLR . . . M 11 8.243 -15.562 33.007 1 87.15 ? C11 CLR 710 A 1 HETATM 12 C C12 CLR . . . M 11 9.28 -14.413 32.94 1 87.32 ? C12 CLR 710 A 1 HETATM 13 C C13 CLR . . . M 11 8.634 -13.045 32.592 1 86.59 ? C13 CLR 710 A 1 HETATM 14 C C14 CLR . . . M 11 7.516 -12.815 33.621 1 86.34 ? C14 CLR 710 A 1 HETATM 15 C C15 CLR . . . M 11 7.129 -11.357 33.421 1 82.32 ? C15 CLR 710 A 1 HETATM 16 C C16 CLR . . . M 11 8.474 -10.653 33.172 1 77.25 ? C16 CLR 710 A 1 HETATM 17 C C17 CLR . . . M 11 9.505 -11.775 32.868 1 79.44 ? C17 CLR 710 A 1 HETATM 18 C C18 CLR . . . M 11 8.102 -13.105 31.121 1 82.68 ? C18 CLR 710 A 1 HETATM 19 C C19 CLR . . . M 11 5.314 -16.871 33.026 1 88.83 ? C19 CLR 710 A 1 HETATM 20 C C20 CLR . . . M 11 10.518 -11.311 31.775 1 84.76 ? C20 CLR 710 A 1 HETATM 21 C C21 CLR . . . M 11 11.708 -12.277 31.607 1 87.39 ? C21 CLR 710 A 1 HETATM 22 C C22 CLR . . . M 11 11.097 -9.908 32.101 1 80.7 ? C22 CLR 710 A 1 HETATM 23 C C23 CLR . . . M 11 11.645 -9.282 30.8 1 79.64 ? C23 CLR 710 A 1 HETATM 24 C C24 CLR . . . M 11 12.85 -8.402 31.134 1 78.72 ? C24 CLR 710 A 1 HETATM 25 C C25 CLR . . . M 11 12.86 -7.108 30.298 1 78.94 ? C25 CLR 710 A 1 HETATM 26 C C26 CLR . . . M 11 12.793 -7.437 28.803 1 82.54 ? C26 CLR 710 A 1 HETATM 27 C C27 CLR . . . M 11 14.168 -6.352 30.553 1 73.93 ? C27 CLR 710 A 1 HETATM 28 O O1 CLR . . . M 11 4.274 -18.909 37.548 1 83.49 ? O1 CLR 710 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #