data_6M47 # _model_server_result.job_id 9K1dplDLpj_Q4F2veKT87Q _model_server_result.datetime_utc '2024-11-28 02:02:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6M47 # _exptl.entry_id 6M47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M47 _cell.length_a 97.004 _cell.length_b 140.956 _cell.length_c 167.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing covale ? covale2 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc9 A OD2 ASP 355 A ASP 420 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc10 H NA NA . A NA 603 1_555 M O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc11 I NA NA . A NA 604 1_555 M O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6M47 _atom_sites.fract_transf_matrix[1][1] 0.010309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CLR A 1 601 1 CLR CLR . G 6 Y01 A 1 602 1 Y01 Y01 . H 7 NA A 1 603 1 NA NA . I 7 NA A 1 604 2 NA NA . J 8 CL A 1 605 1 CL CL . K 9 F1U A 1 608 1 F1U TRD . L 10 D10 A 1 609 1 D10 D10 . M 11 HOH A 1 701 3 HOH HOH . M 11 HOH A 2 702 1 HOH HOH . M 11 HOH A 3 703 9 HOH HOH . M 11 HOH A 4 704 10 HOH HOH . M 11 HOH A 5 705 15 HOH HOH . M 11 HOH A 6 706 2 HOH HOH . M 11 HOH A 7 707 14 HOH HOH . M 11 HOH A 8 708 4 HOH HOH . M 11 HOH A 9 709 6 HOH HOH . M 11 HOH A 10 710 13 HOH HOH . M 11 HOH A 11 711 7 HOH HOH . M 11 HOH A 12 712 11 HOH HOH . M 11 HOH A 13 713 5 HOH HOH . M 11 HOH A 14 714 8 HOH HOH . N 11 HOH L 1 301 12 HOH HOH . N 11 HOH L 2 302 17 HOH HOH . N 11 HOH L 3 303 16 HOH HOH . O 11 HOH H 1 301 19 HOH HOH . O 11 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 5 187.145 299.303 35.051 1 89.36 ? C1 CLR 601 A 1 HETATM 2 C C2 CLR . . . F 5 188.124 300.372 35.546 1 85.94 ? C2 CLR 601 A 1 HETATM 3 C C3 CLR . . . F 5 189.121 299.732 36.508 1 94.05 ? C3 CLR 601 A 1 HETATM 4 C C4 CLR . . . F 5 189.972 298.727 35.727 1 100.71 ? C4 CLR 601 A 1 HETATM 5 C C5 CLR . . . F 5 189.056 297.707 35.059 1 99.88 ? C5 CLR 601 A 1 HETATM 6 C C6 CLR . . . F 5 189.495 296.489 34.947 1 99.35 ? C6 CLR 601 A 1 HETATM 7 C C7 CLR . . . F 5 188.62 295.349 34.513 1 90.76 ? C7 CLR 601 A 1 HETATM 8 C C8 CLR . . . F 5 187.551 295.788 33.507 1 86.33 ? C8 CLR 601 A 1 HETATM 9 C C9 CLR . . . F 5 186.883 297.097 33.933 1 83.88 ? C9 CLR 601 A 1 HETATM 10 C C10 CLR . . . F 5 187.876 298.201 34.277 1 91.72 ? C10 CLR 601 A 1 HETATM 11 C C11 CLR . . . F 5 185.912 297.542 32.849 1 87.01 ? C11 CLR 601 A 1 HETATM 12 C C12 CLR . . . F 5 184.807 296.491 32.646 1 88.74 ? C12 CLR 601 A 1 HETATM 13 C C13 CLR . . . F 5 185.391 295.087 32.434 1 87.09 ? C13 CLR 601 A 1 HETATM 14 C C14 CLR . . . F 5 186.419 294.781 33.566 1 89.11 ? C14 CLR 601 A 1 HETATM 15 C C15 CLR . . . F 5 186.772 293.318 33.27 1 83.23 ? C15 CLR 601 A 1 HETATM 16 C C16 CLR . . . F 5 185.364 292.708 33.047 1 74.11 ? C16 CLR 601 A 1 HETATM 17 C C17 CLR . . . F 5 184.448 293.886 32.609 1 81.36 ? C17 CLR 601 A 1 HETATM 18 C C18 CLR . . . F 5 186.144 295.042 31.1 1 86.16 ? C18 CLR 601 A 1 HETATM 19 C C19 CLR . . . F 5 188.4 298.802 32.969 1 87.47 ? C19 CLR 601 A 1 HETATM 20 C C20 CLR . . . F 5 183.684 293.436 31.36 1 78.81 ? C20 CLR 601 A 1 HETATM 21 C C21 CLR . . . F 5 182.65 294.461 30.885 1 82.22 ? C21 CLR 601 A 1 HETATM 22 C C22 CLR . . . F 5 182.945 292.168 31.784 1 75.25 ? C22 CLR 601 A 1 HETATM 23 C C23 CLR . . . F 5 182.143 291.575 30.63 1 74.31 ? C23 CLR 601 A 1 HETATM 24 C C24 CLR . . . F 5 182.059 290.066 30.851 1 70.94 ? C24 CLR 601 A 1 HETATM 25 C C25 CLR . . . F 5 180.981 289.459 29.956 1 70.32 ? C25 CLR 601 A 1 HETATM 26 C C26 CLR . . . F 5 180.943 287.95 30.182 1 64.36 ? C26 CLR 601 A 1 HETATM 27 C C27 CLR . . . F 5 179.617 290.056 30.307 1 79.33 ? C27 CLR 601 A 1 HETATM 28 O O1 CLR . . . F 5 189.953 300.746 37.083 1 77 ? O1 CLR 601 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #