data_6M47 # _model_server_result.job_id f2SuBT2djYarQXrwjeuUBw _model_server_result.datetime_utc '2024-10-14 03:16:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 6M47 # _exptl.entry_id 6M47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M47 _cell.length_a 97.004 _cell.length_b 140.956 _cell.length_c 167.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing covale ? covale2 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc9 A OD2 ASP 355 A ASP 420 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc10 H NA NA . A NA 603 1_555 M O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc11 I NA NA . A NA 604 1_555 M O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 553 n n CBA CAB Y01 sing 554 n n CBA CAN Y01 sing 555 n n CAN CAJ Y01 sing 556 n n CAJ CAO Y01 sing 557 n n CAO CBB Y01 sing 558 n n CBB CAC Y01 sing 559 n n CBB CBE Y01 sing 560 n n CBE CAP Y01 sing 561 n n CBE CBI Y01 sing 562 n n CAP CAQ Y01 sing 563 n n CAQ CBG Y01 sing 564 n n CBG CBI Y01 sing 565 n n CBG CBD Y01 sing 566 n n CBI CAE Y01 sing 567 n n CBI CAU Y01 sing 568 n n CAU CAS Y01 sing 569 n n CAS CBF Y01 sing 570 n n CBF CBD Y01 sing 571 n n CBF CBH Y01 sing 572 n n CBD CAK Y01 sing 573 n n CAK CAI Y01 sing 574 n n CAI CAZ Y01 doub 575 n n CAZ CAV Y01 sing 576 n n CAZ CBH Y01 sing 577 n n CAV CBC Y01 sing 578 n n CBH CAD Y01 sing 579 n n CBH CAT Y01 sing 580 n n CAT CAR Y01 sing 581 n n CAR CBC Y01 sing 582 n n CBC OAW Y01 sing 583 n n OAW CAY Y01 sing 584 n n CAY OAG Y01 doub 585 n n CAY CAM Y01 sing 586 n n CAM CAL Y01 sing 587 n n CAL CAX Y01 sing 588 n n CAX OAH Y01 sing 589 n n CAX OAF Y01 doub 590 n n CAA HAA1 Y01 sing 591 n n CAA HAA2 Y01 sing 592 n n CAA HAA3 Y01 sing 593 n n CBA HBA Y01 sing 594 n n CAB HAB1 Y01 sing 595 n n CAB HAB2 Y01 sing 596 n n CAB HAB3 Y01 sing 597 n n CAN HAN1 Y01 sing 598 n n CAN HAN2 Y01 sing 599 n n CAJ HAJ1 Y01 sing 600 n n CAJ HAJ2 Y01 sing 601 n n CAO HAO1 Y01 sing 602 n n CAO HAO2 Y01 sing 603 n n CBB HBB Y01 sing 604 n n CAC HAC1 Y01 sing 605 n n CAC HAC2 Y01 sing 606 n n CAC HAC3 Y01 sing 607 n n CBE HBE Y01 sing 608 n n CAP HAP1 Y01 sing 609 n n CAP HAP2 Y01 sing 610 n n CAQ HAQ1 Y01 sing 611 n n CAQ HAQ2 Y01 sing 612 n n CBG HBG Y01 sing 613 n n CBD HBD Y01 sing 614 n n CAE HAE1 Y01 sing 615 n n CAE HAE2 Y01 sing 616 n n CAE HAE3 Y01 sing 617 n n CAU HAU1 Y01 sing 618 n n CAU HAU2 Y01 sing 619 n n CAS HAS1 Y01 sing 620 n n CAS HAS2 Y01 sing 621 n n CBF HBF Y01 sing 622 n n CAK HAK1 Y01 sing 623 n n CAK HAK2 Y01 sing 624 n n CAI HAI Y01 sing 625 n n CAV HAV1 Y01 sing 626 n n CAV HAV2 Y01 sing 627 n n CBC HBC Y01 sing 628 n n CAD HAD1 Y01 sing 629 n n CAD HAD2 Y01 sing 630 n n CAD HAD3 Y01 sing 631 n n CAT HAT1 Y01 sing 632 n n CAT HAT2 Y01 sing 633 n n CAR HAR1 Y01 sing 634 n n CAR HAR2 Y01 sing 635 n n CAM HAM1 Y01 sing 636 n n CAM HAM2 Y01 sing 637 n n CAL HAL1 Y01 sing 638 n n CAL HAL2 Y01 sing 639 n n OAH HAH Y01 sing 640 n n # _atom_sites.entry_id 6M47 _atom_sites.fract_transf_matrix[1][1] 0.010309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CLR A 1 601 1 CLR CLR . G 6 Y01 A 1 602 1 Y01 Y01 . H 7 NA A 1 603 1 NA NA . I 7 NA A 1 604 2 NA NA . J 8 CL A 1 605 1 CL CL . K 9 F1U A 1 608 1 F1U TRD . L 10 D10 A 1 609 1 D10 D10 . M 11 HOH A 1 701 3 HOH HOH . M 11 HOH A 2 702 1 HOH HOH . M 11 HOH A 3 703 9 HOH HOH . M 11 HOH A 4 704 10 HOH HOH . M 11 HOH A 5 705 15 HOH HOH . M 11 HOH A 6 706 2 HOH HOH . M 11 HOH A 7 707 14 HOH HOH . M 11 HOH A 8 708 4 HOH HOH . M 11 HOH A 9 709 6 HOH HOH . M 11 HOH A 10 710 13 HOH HOH . M 11 HOH A 11 711 7 HOH HOH . M 11 HOH A 12 712 11 HOH HOH . M 11 HOH A 13 713 5 HOH HOH . M 11 HOH A 14 714 8 HOH HOH . N 11 HOH L 1 301 12 HOH HOH . N 11 HOH L 2 302 17 HOH HOH . N 11 HOH L 3 303 16 HOH HOH . O 11 HOH H 1 301 19 HOH HOH . O 11 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 6 186.756 280.667 39.681 1 85.65 ? CAA Y01 602 A 1 HETATM 2 C CBA Y01 . . . G 6 186.046 281.856 40.344 1 95.09 ? CBA Y01 602 A 1 HETATM 3 C CAB Y01 . . . G 6 185.296 282.665 39.28 1 80.29 ? CAB Y01 602 A 1 HETATM 4 C CAN Y01 . . . G 6 187.071 282.796 40.98 1 95.7 ? CAN Y01 602 A 1 HETATM 5 C CAJ Y01 . . . G 6 188.272 282.025 41.536 1 92.64 ? CAJ Y01 602 A 1 HETATM 6 C CAO Y01 . . . G 6 188.248 282.177 43.05 1 87.79 ? CAO Y01 602 A 1 HETATM 7 C CBB Y01 . . . G 6 189.4 283.071 43.509 1 88.42 ? CBB Y01 602 A 1 HETATM 8 C CAC Y01 . . . G 6 189.301 284.461 42.861 1 78.34 ? CAC Y01 602 A 1 HETATM 9 C CBE Y01 . . . G 6 189.271 283.094 45.036 1 91.91 ? CBE Y01 602 A 1 HETATM 10 C CAP Y01 . . . G 6 189.13 281.639 45.558 1 92.34 ? CAP Y01 602 A 1 HETATM 11 C CAQ Y01 . . . G 6 189.726 281.639 46.99 1 95.89 ? CAQ Y01 602 A 1 HETATM 12 C CBG Y01 . . . G 6 190.073 283.121 47.201 1 90.15 ? CBG Y01 602 A 1 HETATM 13 C CBI Y01 . . . G 6 190.483 283.641 45.791 1 89.79 ? CBI Y01 602 A 1 HETATM 14 C CAE Y01 . . . G 6 191.791 283.013 45.271 1 92.19 ? CAE Y01 602 A 1 HETATM 15 C CAU Y01 . . . G 6 190.635 285.165 45.861 1 87.04 ? CAU Y01 602 A 1 HETATM 16 C CAS Y01 . . . G 6 191.61 285.587 46.982 1 91.01 ? CAS Y01 602 A 1 HETATM 17 C CBF Y01 . . . G 6 191.336 284.882 48.31 1 92.9 ? CBF Y01 602 A 1 HETATM 18 C CBD Y01 . . . G 6 191.238 283.364 48.117 1 89.59 ? CBD Y01 602 A 1 HETATM 19 C CAK Y01 . . . G 6 190.922 282.611 49.412 1 101.81 ? CAK Y01 602 A 1 HETATM 20 C CAI Y01 . . . G 6 191.796 283.114 50.513 1 112.51 ? CAI Y01 602 A 1 HETATM 21 C CAZ Y01 . . . G 6 192.369 284.283 50.508 1 108.96 ? CAZ Y01 602 A 1 HETATM 22 C CAV Y01 . . . G 6 193.09 284.672 51.781 1 101.08 ? CAV Y01 602 A 1 HETATM 23 C CBH Y01 . . . G 6 192.402 285.225 49.326 1 104.33 ? CBH Y01 602 A 1 HETATM 24 C CAD Y01 . . . G 6 193.775 285.148 48.645 1 98.4 ? CAD Y01 602 A 1 HETATM 25 C CAT Y01 . . . G 6 192.196 286.681 49.757 1 100.47 ? CAT Y01 602 A 1 HETATM 26 C CAR Y01 . . . G 6 193.16 287.046 50.88 1 100.43 ? CAR Y01 602 A 1 HETATM 27 C CBC Y01 . . . G 6 192.841 286.148 52.076 1 100.66 ? CBC Y01 602 A 1 HETATM 28 O OAW Y01 . . . G 6 193.724 286.477 53.168 1 117.93 ? OAW Y01 602 A 1 HETATM 29 C CAY Y01 . . . G 6 193.448 287.595 53.854 1 119.96 ? CAY Y01 602 A 1 HETATM 30 O OAG Y01 . . . G 6 192.31 287.844 54.197 1 109.96 ? OAG Y01 602 A 1 HETATM 31 C CAM Y01 . . . G 6 194.591 288.517 54.188 1 119.72 ? CAM Y01 602 A 1 HETATM 32 C CAL Y01 . . . G 6 195.616 287.705 54.978 1 118.68 ? CAL Y01 602 A 1 HETATM 33 C CAX Y01 . . . G 6 196.156 288.61 56.053 1 134.76 ? CAX Y01 602 A 1 HETATM 34 O OAH Y01 . . . G 6 196.533 288.109 57.247 1 132.16 ? OAH Y01 602 A 1 HETATM 35 O OAF Y01 . . . G 6 196.25 289.8 55.824 1 132.36 ? OAF Y01 602 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #