data_6M47 # _model_server_result.job_id AfZ4gZjM38h5bZ1LNw_9QQ _model_server_result.datetime_utc '2024-11-24 08:42:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":609}' # _entry.id 6M47 # _exptl.entry_id 6M47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 10 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M47 _cell.length_a 97.004 _cell.length_b 140.956 _cell.length_c 167.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing covale ? covale2 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 H NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc9 A OD2 ASP 355 A ASP 420 1_555 I NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc10 H NA NA . A NA 603 1_555 M O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc11 I NA NA . A NA 604 1_555 M O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 160 n n C1 H11 D10 sing 161 n n C1 H12 D10 sing 162 n n C1 H13 D10 sing 163 n n C2 C3 D10 sing 164 n n C2 H21 D10 sing 165 n n C2 H22 D10 sing 166 n n C3 C4 D10 sing 167 n n C3 H31 D10 sing 168 n n C3 H32 D10 sing 169 n n C4 C5 D10 sing 170 n n C4 H41 D10 sing 171 n n C4 H42 D10 sing 172 n n C5 C6 D10 sing 173 n n C5 H51 D10 sing 174 n n C5 H52 D10 sing 175 n n C6 C7 D10 sing 176 n n C6 H61 D10 sing 177 n n C6 H62 D10 sing 178 n n C7 C8 D10 sing 179 n n C7 H71 D10 sing 180 n n C7 H72 D10 sing 181 n n C8 C9 D10 sing 182 n n C8 H81 D10 sing 183 n n C8 H82 D10 sing 184 n n C9 C10 D10 sing 185 n n C9 H91 D10 sing 186 n n C9 H92 D10 sing 187 n n C10 H101 D10 sing 188 n n C10 H102 D10 sing 189 n n C10 H103 D10 sing 190 n n # _atom_sites.entry_id 6M47 _atom_sites.fract_transf_matrix[1][1] 0.010309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CLR A 1 601 1 CLR CLR . G 6 Y01 A 1 602 1 Y01 Y01 . H 7 NA A 1 603 1 NA NA . I 7 NA A 1 604 2 NA NA . J 8 CL A 1 605 1 CL CL . K 9 F1U A 1 608 1 F1U TRD . L 10 D10 A 1 609 1 D10 D10 . M 11 HOH A 1 701 3 HOH HOH . M 11 HOH A 2 702 1 HOH HOH . M 11 HOH A 3 703 9 HOH HOH . M 11 HOH A 4 704 10 HOH HOH . M 11 HOH A 5 705 15 HOH HOH . M 11 HOH A 6 706 2 HOH HOH . M 11 HOH A 7 707 14 HOH HOH . M 11 HOH A 8 708 4 HOH HOH . M 11 HOH A 9 709 6 HOH HOH . M 11 HOH A 10 710 13 HOH HOH . M 11 HOH A 11 711 7 HOH HOH . M 11 HOH A 12 712 11 HOH HOH . M 11 HOH A 13 713 5 HOH HOH . M 11 HOH A 14 714 8 HOH HOH . N 11 HOH L 1 301 12 HOH HOH . N 11 HOH L 2 302 17 HOH HOH . N 11 HOH L 3 303 16 HOH HOH . O 11 HOH H 1 301 19 HOH HOH . O 11 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . L 10 221.881 298.412 18.835 1 64.44 ? C1 D10 609 A 1 HETATM 2 C C2 D10 . . . L 10 221.024 297.289 18.25 1 90.03 ? C2 D10 609 A 1 HETATM 3 C C3 D10 . . . L 10 221.462 295.916 18.761 1 94.65 ? C3 D10 609 A 1 HETATM 4 C C4 D10 . . . L 10 220.468 294.798 18.431 1 92.22 ? C4 D10 609 A 1 HETATM 5 C C5 D10 . . . L 10 220.657 293.578 19.339 1 90.8 ? C5 D10 609 A 1 HETATM 6 C C6 D10 . . . L 10 219.876 292.335 18.903 1 84.4 ? C6 D10 609 A 1 HETATM 7 C C7 D10 . . . L 10 218.834 291.891 19.929 1 95.95 ? C7 D10 609 A 1 HETATM 8 C C8 D10 . . . L 10 219.332 290.838 20.92 1 96.34 ? C8 D10 609 A 1 HETATM 9 C C9 D10 . . . L 10 218.274 290.564 21.99 1 88.06 ? C9 D10 609 A 1 HETATM 10 C C10 D10 . . . L 10 218.46 289.206 22.661 1 70.79 ? C10 D10 609 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 540 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #