data_6M4S # _model_server_result.job_id xbYN8xoyFi-RlUXxLCQKOg _model_server_result.datetime_utc '2024-10-19 11:43:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6M4S # _exptl.entry_id 6M4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.65 _cell.angle_gamma 90 _cell.entry_id 6M4S _cell.length_a 41.636 _cell.length_b 91.092 _cell.length_c 52.975 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 358 A CYS 358 1_555 J FE HEM . A HEM 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OG SER 399 A SER 399 1_555 I CA CA . A CA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc3 J FE HEM . A HEM 509 1_555 K O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6M4S _atom_sites.fract_transf_matrix[1][1] 0.024018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001953 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 2 GOL GOL . C 2 GOL A 1 502 3 GOL GOL . D 2 GOL A 1 503 4 GOL GOL . E 2 GOL A 1 504 5 GOL GOL . F 2 GOL A 1 505 6 GOL GOL . G 3 MPD A 1 506 5 MPD MPD . H 3 MPD A 1 507 6 MPD MPD . I 4 CA A 1 508 1 CA CA . J 5 HEM A 1 509 1 HEM HEM . K 6 HOH A 1 601 251 HOH HOH . K 6 HOH A 2 602 253 HOH HOH . K 6 HOH A 3 603 149 HOH HOH . K 6 HOH A 4 604 132 HOH HOH . K 6 HOH A 5 605 92 HOH HOH . K 6 HOH A 6 606 56 HOH HOH . K 6 HOH A 7 607 155 HOH HOH . K 6 HOH A 8 608 197 HOH HOH . K 6 HOH A 9 609 211 HOH HOH . K 6 HOH A 10 610 124 HOH HOH . K 6 HOH A 11 611 127 HOH HOH . K 6 HOH A 12 612 162 HOH HOH . K 6 HOH A 13 613 27 HOH HOH . K 6 HOH A 14 614 210 HOH HOH . K 6 HOH A 15 615 137 HOH HOH . K 6 HOH A 16 616 23 HOH HOH . K 6 HOH A 17 617 86 HOH HOH . K 6 HOH A 18 618 220 HOH HOH . K 6 HOH A 19 619 191 HOH HOH . K 6 HOH A 20 620 269 HOH HOH . K 6 HOH A 21 621 147 HOH HOH . K 6 HOH A 22 622 264 HOH HOH . K 6 HOH A 23 623 70 HOH HOH . K 6 HOH A 24 624 9 HOH HOH . K 6 HOH A 25 625 37 HOH HOH . K 6 HOH A 26 626 65 HOH HOH . K 6 HOH A 27 627 69 HOH HOH . K 6 HOH A 28 628 97 HOH HOH . K 6 HOH A 29 629 146 HOH HOH . K 6 HOH A 30 630 158 HOH HOH . K 6 HOH A 31 631 168 HOH HOH . K 6 HOH A 32 632 11 HOH HOH . K 6 HOH A 33 633 121 HOH HOH . K 6 HOH A 34 634 63 HOH HOH . K 6 HOH A 35 635 15 HOH HOH . K 6 HOH A 36 636 105 HOH HOH . K 6 HOH A 37 637 130 HOH HOH . K 6 HOH A 38 638 46 HOH HOH . K 6 HOH A 39 639 180 HOH HOH . K 6 HOH A 40 640 40 HOH HOH . K 6 HOH A 41 641 106 HOH HOH . K 6 HOH A 42 642 26 HOH HOH . K 6 HOH A 43 643 75 HOH HOH . K 6 HOH A 44 644 62 HOH HOH . K 6 HOH A 45 645 163 HOH HOH . K 6 HOH A 46 646 139 HOH HOH . K 6 HOH A 47 647 101 HOH HOH . K 6 HOH A 48 648 73 HOH HOH . K 6 HOH A 49 649 2 HOH HOH . K 6 HOH A 50 650 109 HOH HOH . K 6 HOH A 51 651 25 HOH HOH . K 6 HOH A 52 652 164 HOH HOH . K 6 HOH A 53 653 144 HOH HOH . K 6 HOH A 54 654 6 HOH HOH . K 6 HOH A 55 655 178 HOH HOH . K 6 HOH A 56 656 29 HOH HOH . K 6 HOH A 57 657 89 HOH HOH . K 6 HOH A 58 658 156 HOH HOH . K 6 HOH A 59 659 154 HOH HOH . K 6 HOH A 60 660 38 HOH HOH . K 6 HOH A 61 661 185 HOH HOH . K 6 HOH A 62 662 221 HOH HOH . K 6 HOH A 63 663 234 HOH HOH . K 6 HOH A 64 664 213 HOH HOH . K 6 HOH A 65 665 41 HOH HOH . K 6 HOH A 66 666 237 HOH HOH . K 6 HOH A 67 667 135 HOH HOH . K 6 HOH A 68 668 167 HOH HOH . K 6 HOH A 69 669 72 HOH HOH . K 6 HOH A 70 670 170 HOH HOH . K 6 HOH A 71 671 114 HOH HOH . K 6 HOH A 72 672 13 HOH HOH . K 6 HOH A 73 673 103 HOH HOH . K 6 HOH A 74 674 52 HOH HOH . K 6 HOH A 75 675 22 HOH HOH . K 6 HOH A 76 676 34 HOH HOH . K 6 HOH A 77 677 157 HOH HOH . K 6 HOH A 78 678 188 HOH HOH . K 6 HOH A 79 679 18 HOH HOH . K 6 HOH A 80 680 84 HOH HOH . K 6 HOH A 81 681 61 HOH HOH . K 6 HOH A 82 682 174 HOH HOH . K 6 HOH A 83 683 208 HOH HOH . K 6 HOH A 84 684 159 HOH HOH . K 6 HOH A 85 685 123 HOH HOH . K 6 HOH A 86 686 12 HOH HOH . K 6 HOH A 87 687 95 HOH HOH . K 6 HOH A 88 688 227 HOH HOH . K 6 HOH A 89 689 286 HOH HOH . K 6 HOH A 90 690 24 HOH HOH . K 6 HOH A 91 691 160 HOH HOH . K 6 HOH A 92 692 183 HOH HOH . K 6 HOH A 93 693 190 HOH HOH . K 6 HOH A 94 694 87 HOH HOH . K 6 HOH A 95 695 254 HOH HOH . K 6 HOH A 96 696 78 HOH HOH . K 6 HOH A 97 697 110 HOH HOH . K 6 HOH A 98 698 10 HOH HOH . K 6 HOH A 99 699 43 HOH HOH . K 6 HOH A 100 700 169 HOH HOH . K 6 HOH A 101 701 39 HOH HOH . K 6 HOH A 102 702 7 HOH HOH . K 6 HOH A 103 703 102 HOH HOH . K 6 HOH A 104 704 60 HOH HOH . K 6 HOH A 105 705 71 HOH HOH . K 6 HOH A 106 706 172 HOH HOH . K 6 HOH A 107 707 80 HOH HOH . K 6 HOH A 108 708 259 HOH HOH . K 6 HOH A 109 709 118 HOH HOH . K 6 HOH A 110 710 148 HOH HOH . K 6 HOH A 111 711 115 HOH HOH . K 6 HOH A 112 712 79 HOH HOH . K 6 HOH A 113 713 1 HOH HOH . K 6 HOH A 114 714 239 HOH HOH . K 6 HOH A 115 715 48 HOH HOH . K 6 HOH A 116 716 261 HOH HOH . K 6 HOH A 117 717 93 HOH HOH . K 6 HOH A 118 718 161 HOH HOH . K 6 HOH A 119 719 85 HOH HOH . K 6 HOH A 120 720 229 HOH HOH . K 6 HOH A 121 721 19 HOH HOH . K 6 HOH A 122 722 287 HOH HOH . K 6 HOH A 123 723 266 HOH HOH . K 6 HOH A 124 724 182 HOH HOH . K 6 HOH A 125 725 8 HOH HOH . K 6 HOH A 126 726 151 HOH HOH . K 6 HOH A 127 727 99 HOH HOH . K 6 HOH A 128 728 57 HOH HOH . K 6 HOH A 129 729 244 HOH HOH . K 6 HOH A 130 730 58 HOH HOH . K 6 HOH A 131 731 47 HOH HOH . K 6 HOH A 132 732 152 HOH HOH . K 6 HOH A 133 733 113 HOH HOH . K 6 HOH A 134 734 77 HOH HOH . K 6 HOH A 135 735 4 HOH HOH . K 6 HOH A 136 736 165 HOH HOH . K 6 HOH A 137 737 17 HOH HOH . K 6 HOH A 138 738 50 HOH HOH . K 6 HOH A 139 739 131 HOH HOH . K 6 HOH A 140 740 166 HOH HOH . K 6 HOH A 141 741 59 HOH HOH . K 6 HOH A 142 742 260 HOH HOH . K 6 HOH A 143 743 224 HOH HOH . K 6 HOH A 144 744 74 HOH HOH . K 6 HOH A 145 745 88 HOH HOH . K 6 HOH A 146 746 111 HOH HOH . K 6 HOH A 147 747 179 HOH HOH . K 6 HOH A 148 748 192 HOH HOH . K 6 HOH A 149 749 20 HOH HOH . K 6 HOH A 150 750 209 HOH HOH . K 6 HOH A 151 751 16 HOH HOH . K 6 HOH A 152 752 5 HOH HOH . K 6 HOH A 153 753 32 HOH HOH . K 6 HOH A 154 754 76 HOH HOH . K 6 HOH A 155 755 81 HOH HOH . K 6 HOH A 156 756 98 HOH HOH . K 6 HOH A 157 757 49 HOH HOH . K 6 HOH A 158 758 290 HOH HOH . K 6 HOH A 159 759 173 HOH HOH . K 6 HOH A 160 760 252 HOH HOH . K 6 HOH A 161 761 153 HOH HOH . K 6 HOH A 162 762 201 HOH HOH . K 6 HOH A 163 763 108 HOH HOH . K 6 HOH A 164 764 279 HOH HOH . K 6 HOH A 165 765 36 HOH HOH . K 6 HOH A 166 766 90 HOH HOH . K 6 HOH A 167 767 243 HOH HOH . K 6 HOH A 168 768 67 HOH HOH . K 6 HOH A 169 769 94 HOH HOH . K 6 HOH A 170 770 128 HOH HOH . K 6 HOH A 171 771 53 HOH HOH . K 6 HOH A 172 772 140 HOH HOH . K 6 HOH A 173 773 45 HOH HOH . K 6 HOH A 174 774 31 HOH HOH . K 6 HOH A 175 775 30 HOH HOH . K 6 HOH A 176 776 33 HOH HOH . K 6 HOH A 177 777 268 HOH HOH . K 6 HOH A 178 778 215 HOH HOH . K 6 HOH A 179 779 54 HOH HOH . K 6 HOH A 180 780 126 HOH HOH . K 6 HOH A 181 781 232 HOH HOH . K 6 HOH A 182 782 14 HOH HOH . K 6 HOH A 183 783 66 HOH HOH . K 6 HOH A 184 784 21 HOH HOH . K 6 HOH A 185 785 245 HOH HOH . K 6 HOH A 186 786 28 HOH HOH . K 6 HOH A 187 787 222 HOH HOH . K 6 HOH A 188 788 44 HOH HOH . K 6 HOH A 189 789 125 HOH HOH . K 6 HOH A 190 790 112 HOH HOH . K 6 HOH A 191 791 289 HOH HOH . K 6 HOH A 192 792 83 HOH HOH . K 6 HOH A 193 793 42 HOH HOH . K 6 HOH A 194 794 175 HOH HOH . K 6 HOH A 195 795 184 HOH HOH . K 6 HOH A 196 796 117 HOH HOH . K 6 HOH A 197 797 107 HOH HOH . K 6 HOH A 198 798 68 HOH HOH . K 6 HOH A 199 799 116 HOH HOH . K 6 HOH A 200 800 35 HOH HOH . K 6 HOH A 201 801 242 HOH HOH . K 6 HOH A 202 802 100 HOH HOH . K 6 HOH A 203 803 120 HOH HOH . K 6 HOH A 204 804 119 HOH HOH . K 6 HOH A 205 805 236 HOH HOH . K 6 HOH A 206 806 51 HOH HOH . K 6 HOH A 207 807 202 HOH HOH . K 6 HOH A 208 808 181 HOH HOH . K 6 HOH A 209 809 217 HOH HOH . K 6 HOH A 210 810 223 HOH HOH . K 6 HOH A 211 811 145 HOH HOH . K 6 HOH A 212 812 187 HOH HOH . K 6 HOH A 213 813 214 HOH HOH . K 6 HOH A 214 814 285 HOH HOH . K 6 HOH A 215 815 246 HOH HOH . K 6 HOH A 216 816 226 HOH HOH . K 6 HOH A 217 817 186 HOH HOH . K 6 HOH A 218 818 247 HOH HOH . K 6 HOH A 219 819 91 HOH HOH . K 6 HOH A 220 820 177 HOH HOH . K 6 HOH A 221 821 216 HOH HOH . K 6 HOH A 222 822 194 HOH HOH . K 6 HOH A 223 823 218 HOH HOH . K 6 HOH A 224 824 200 HOH HOH . K 6 HOH A 225 825 196 HOH HOH . K 6 HOH A 226 826 250 HOH HOH . K 6 HOH A 227 827 143 HOH HOH . K 6 HOH A 228 828 238 HOH HOH . K 6 HOH A 229 829 277 HOH HOH . K 6 HOH A 230 830 64 HOH HOH . K 6 HOH A 231 831 138 HOH HOH . K 6 HOH A 232 832 230 HOH HOH . K 6 HOH A 233 833 193 HOH HOH . K 6 HOH A 234 834 133 HOH HOH . K 6 HOH A 235 835 55 HOH HOH . K 6 HOH A 236 836 255 HOH HOH . K 6 HOH A 237 837 241 HOH HOH . K 6 HOH A 238 838 207 HOH HOH . K 6 HOH A 239 839 205 HOH HOH . K 6 HOH A 240 840 195 HOH HOH . K 6 HOH A 241 841 171 HOH HOH . K 6 HOH A 242 842 240 HOH HOH . K 6 HOH A 243 843 129 HOH HOH . K 6 HOH A 244 844 150 HOH HOH . K 6 HOH A 245 845 293 HOH HOH . K 6 HOH A 246 846 225 HOH HOH . K 6 HOH A 247 847 134 HOH HOH . K 6 HOH A 248 848 136 HOH HOH . K 6 HOH A 249 849 176 HOH HOH . K 6 HOH A 250 850 189 HOH HOH . K 6 HOH A 251 851 122 HOH HOH . K 6 HOH A 252 852 96 HOH HOH . K 6 HOH A 253 853 231 HOH HOH . K 6 HOH A 254 854 198 HOH HOH . K 6 HOH A 255 855 203 HOH HOH . K 6 HOH A 256 856 228 HOH HOH . K 6 HOH A 257 857 256 HOH HOH . K 6 HOH A 258 858 104 HOH HOH . K 6 HOH A 259 859 206 HOH HOH . K 6 HOH A 260 860 248 HOH HOH . K 6 HOH A 261 861 249 HOH HOH . K 6 HOH A 262 862 204 HOH HOH . K 6 HOH A 263 863 82 HOH HOH . K 6 HOH A 264 864 142 HOH HOH . K 6 HOH A 265 865 282 HOH HOH . K 6 HOH A 266 866 199 HOH HOH . K 6 HOH A 267 867 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -17.705 8.324 -2.955 1 53.41 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 2 -19.132 8.276 -3.111 1 56.22 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 2 -17.179 7.743 -4.238 1 53.42 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 2 -17.476 8.753 -5.191 1 63.09 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 2 -15.693 7.419 -4.185 1 57.46 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 2 -14.933 8.588 -3.848 1 59.67 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #