data_6M5D # _model_server_result.job_id qxMWcV_sJgZWfgST_g9r4Q _model_server_result.datetime_utc '2024-12-04 05:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6M5D # _exptl.entry_id 6M5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M5D _cell.length_a 182.697 _cell.length_b 182.697 _cell.length_c 79.814 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 53 1_555 A SG CYS 59 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 72 A CYS 75 1_555 A SG CYS 88 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 A SG CYS 121 A CYS 124 1_555 A SG CYS 166 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 165 A CYS 168 1_555 A SG CYS 174 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 A SG CYS 197 A CYS 200 1_555 A SG CYS 243 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 242 A CYS 245 1_555 A SG CYS 250 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? disulf ? disulf7 A SG CYS 262 A CYS 265 1_555 A SG CYS 276 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf8 A SG CYS 275 A CYS 278 1_555 A SG CYS 286 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf9 A SG CYS 313 A CYS 316 1_555 A SG CYS 358 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? disulf ? disulf10 A SG CYS 357 A CYS 360 1_555 A SG CYS 366 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf11 A SG CYS 389 A CYS 392 1_555 A SG CYS 435 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 A SG CYS 434 A CYS 437 1_555 A SG CYS 445 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 A SG CYS 458 A CYS 461 1_555 A SG CYS 474 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf14 A SG CYS 473 A CYS 476 1_555 A SG CYS 484 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf15 A SG CYS 511 A CYS 514 1_555 A SG CYS 556 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf16 A SG CYS 555 A CYS 558 1_555 A SG CYS 564 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 6M5D _atom_sites.fract_transf_matrix[1][1] 0.005474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 1 PO4 PO4 . C 3 HOH A 1 701 5 HOH HOH . C 3 HOH A 2 702 4 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 27.659 -69.275 17.263 1 143.58 ? P PO4 601 A 1 HETATM 2 O O1 PO4 . . . B 2 28.723 -69.186 16.191 1 143.48 ? O1 PO4 601 A 1 HETATM 3 O O2 PO4 . . . B 2 26.769 -68.046 17.201 1 142.12 ? O2 PO4 601 A 1 HETATM 4 O O3 PO4 . . . B 2 26.807 -70.505 17.039 1 143.98 ? O3 PO4 601 A 1 HETATM 5 O O4 PO4 . . . B 2 28.339 -69.4 18.61 1 142.48 ? O4 PO4 601 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 75 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 5 #