data_6M5M # _model_server_result.job_id Ck8kz_EnphpUEuVlwPnGCQ _model_server_result.datetime_utc '2024-10-19 20:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6M5M # _exptl.entry_id 6M5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M5M _cell.length_a 44.46 _cell.length_b 44.46 _cell.length_c 303.613 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 1 1_555 A SG CYS 156 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 23 A CYS 2 1_555 B SG CYS 68 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? disulf ? disulf3 A SG CYS 25 A CYS 4 1_555 B SG CYS 22 B CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf4 A SG CYS 27 A CYS 6 1_555 A SG CYS 38 A CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 A SG CYS 55 A CYS 34 1_555 A SG CYS 152 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? disulf ? disulf6 A SG CYS 124 A CYS 103 1_555 A SG CYS 143 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? disulf ? disulf7 B SG CYS 23 B CYS 2 1_555 B SG CYS 157 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf8 B SG CYS 28 B CYS 7 1_555 B SG CYS 39 B CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf9 B SG CYS 56 B CYS 35 1_555 B SG CYS 153 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf10 B SG CYS 125 B CYS 104 1_555 B SG CYS 144 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc1 A O THR 64 A THR 43 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OE1 GLU 66 A GLU 45 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 A OE1 GLU 70 A GLU 49 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 A OE2 GLU 70 A GLU 49 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc5 A OD1 ASP 119 A ASP 98 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc6 A O ASP 139 A ASP 118 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 A OD2 ASP 139 A ASP 118 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc8 A OE1 GLN 141 A GLN 120 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc9 A OE1 GLU 153 A GLU 132 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc10 A OE2 GLU 153 A GLU 132 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 C CA CA . A CA 201 1_555 I O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc12 C CA CA . A CA 201 1_555 I O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc13 E CA CA . A CA 203 1_555 I O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc14 E CA CA . A CA 203 1_555 I O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc15 E CA CA . A CA 203 1_555 I O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc16 B O THR 65 B THR 44 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc17 B OE1 GLU 67 B GLU 46 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc18 B OE1 GLU 71 B GLU 50 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc19 B OE2 GLU 71 B GLU 50 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc20 B OD2 ASP 120 B ASP 99 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc21 B OD1 ASN 139 B ASN 118 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc22 B O ASP 140 B ASP 119 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc23 B OD1 ASP 140 B ASP 119 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc24 B OE1 GLU 154 B GLU 133 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc25 B OE2 GLU 154 B GLU 133 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc26 F CA CA . B CA 201 1_555 J O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc27 F CA CA . B CA 201 1_555 J O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc28 H CA CA . B CA 203 1_555 J O HOH . B HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M5M _atom_sites.fract_transf_matrix[1][1] 0.022492 _atom_sites.fract_transf_matrix[1][2] 0.012986 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 201 201 CA CA . D 4 NAG A 1 202 5467 NAG NAG . E 3 CA A 1 203 1 CA CA . F 3 CA B 1 201 201 CA CA . G 4 NAG B 1 202 5467 NAG NAG . H 3 CA B 1 203 2 CA CA . I 5 HOH A 1 301 5 HOH HOH . I 5 HOH A 2 302 125 HOH HOH . I 5 HOH A 3 303 40 HOH HOH . I 5 HOH A 4 304 70 HOH HOH . I 5 HOH A 5 305 89 HOH HOH . I 5 HOH A 6 306 10 HOH HOH . I 5 HOH A 7 307 58 HOH HOH . I 5 HOH A 8 308 62 HOH HOH . I 5 HOH A 9 309 36 HOH HOH . I 5 HOH A 10 310 30 HOH HOH . I 5 HOH A 11 311 50 HOH HOH . I 5 HOH A 12 312 136 HOH HOH . I 5 HOH A 13 313 77 HOH HOH . I 5 HOH A 14 314 69 HOH HOH . I 5 HOH A 15 315 47 HOH HOH . I 5 HOH A 16 316 51 HOH HOH . I 5 HOH A 17 317 79 HOH HOH . I 5 HOH A 18 318 123 HOH HOH . I 5 HOH A 19 319 46 HOH HOH . I 5 HOH A 20 320 23 HOH HOH . I 5 HOH A 21 321 24 HOH HOH . I 5 HOH A 22 322 99 HOH HOH . I 5 HOH A 23 323 55 HOH HOH . I 5 HOH A 24 324 33 HOH HOH . I 5 HOH A 25 325 49 HOH HOH . I 5 HOH A 26 326 41 HOH HOH . I 5 HOH A 27 327 14 HOH HOH . I 5 HOH A 28 328 54 HOH HOH . I 5 HOH A 29 329 31 HOH HOH . I 5 HOH A 30 330 133 HOH HOH . I 5 HOH A 31 331 35 HOH HOH . I 5 HOH A 32 332 64 HOH HOH . I 5 HOH A 33 333 91 HOH HOH . I 5 HOH A 34 334 76 HOH HOH . I 5 HOH A 35 335 74 HOH HOH . I 5 HOH A 36 336 129 HOH HOH . I 5 HOH A 37 337 87 HOH HOH . I 5 HOH A 38 338 56 HOH HOH . I 5 HOH A 39 339 83 HOH HOH . I 5 HOH A 40 340 114 HOH HOH . I 5 HOH A 41 341 96 HOH HOH . I 5 HOH A 42 342 141 HOH HOH . I 5 HOH A 43 343 9 HOH HOH . I 5 HOH A 44 344 37 HOH HOH . I 5 HOH A 45 345 95 HOH HOH . I 5 HOH A 46 346 60 HOH HOH . I 5 HOH A 47 347 68 HOH HOH . I 5 HOH A 48 348 142 HOH HOH . I 5 HOH A 49 349 115 HOH HOH . I 5 HOH A 50 350 63 HOH HOH . I 5 HOH A 51 351 8 HOH HOH . I 5 HOH A 52 352 105 HOH HOH . I 5 HOH A 53 353 121 HOH HOH . I 5 HOH A 54 354 32 HOH HOH . I 5 HOH A 55 355 7 HOH HOH . I 5 HOH A 56 356 73 HOH HOH . I 5 HOH A 57 357 78 HOH HOH . I 5 HOH A 58 358 61 HOH HOH . I 5 HOH A 59 359 85 HOH HOH . I 5 HOH A 60 360 103 HOH HOH . I 5 HOH A 61 361 102 HOH HOH . I 5 HOH A 62 362 135 HOH HOH . I 5 HOH A 63 363 104 HOH HOH . I 5 HOH A 64 364 17 HOH HOH . I 5 HOH A 65 365 101 HOH HOH . I 5 HOH A 66 366 98 HOH HOH . I 5 HOH A 67 367 53 HOH HOH . I 5 HOH A 68 368 59 HOH HOH . I 5 HOH A 69 369 48 HOH HOH . I 5 HOH A 70 370 128 HOH HOH . I 5 HOH A 71 371 118 HOH HOH . J 5 HOH B 1 301 28 HOH HOH . J 5 HOH B 2 302 107 HOH HOH . J 5 HOH B 3 303 43 HOH HOH . J 5 HOH B 4 304 132 HOH HOH . J 5 HOH B 5 305 72 HOH HOH . J 5 HOH B 6 306 75 HOH HOH . J 5 HOH B 7 307 15 HOH HOH . J 5 HOH B 8 308 22 HOH HOH . J 5 HOH B 9 309 38 HOH HOH . J 5 HOH B 10 310 112 HOH HOH . J 5 HOH B 11 311 3 HOH HOH . J 5 HOH B 12 312 57 HOH HOH . J 5 HOH B 13 313 20 HOH HOH . J 5 HOH B 14 314 88 HOH HOH . J 5 HOH B 15 315 4 HOH HOH . J 5 HOH B 16 316 97 HOH HOH . J 5 HOH B 17 317 29 HOH HOH . J 5 HOH B 18 318 138 HOH HOH . J 5 HOH B 19 319 66 HOH HOH . J 5 HOH B 20 320 93 HOH HOH . J 5 HOH B 21 321 6 HOH HOH . J 5 HOH B 22 322 25 HOH HOH . J 5 HOH B 23 323 52 HOH HOH . J 5 HOH B 24 324 81 HOH HOH . J 5 HOH B 25 325 84 HOH HOH . J 5 HOH B 26 326 119 HOH HOH . J 5 HOH B 27 327 65 HOH HOH . J 5 HOH B 28 328 90 HOH HOH . J 5 HOH B 29 329 71 HOH HOH . J 5 HOH B 30 330 39 HOH HOH . J 5 HOH B 31 331 26 HOH HOH . J 5 HOH B 32 332 42 HOH HOH . J 5 HOH B 33 333 34 HOH HOH . J 5 HOH B 34 334 109 HOH HOH . J 5 HOH B 35 335 117 HOH HOH . J 5 HOH B 36 336 92 HOH HOH . J 5 HOH B 37 337 140 HOH HOH . J 5 HOH B 38 338 143 HOH HOH . J 5 HOH B 39 339 67 HOH HOH . J 5 HOH B 40 340 82 HOH HOH . J 5 HOH B 41 341 18 HOH HOH . J 5 HOH B 42 342 100 HOH HOH . J 5 HOH B 43 343 1 HOH HOH . J 5 HOH B 44 344 2 HOH HOH . J 5 HOH B 45 345 45 HOH HOH . J 5 HOH B 46 346 19 HOH HOH . J 5 HOH B 47 347 126 HOH HOH . J 5 HOH B 48 348 21 HOH HOH . J 5 HOH B 49 349 12 HOH HOH . J 5 HOH B 50 350 137 HOH HOH . J 5 HOH B 51 351 86 HOH HOH . J 5 HOH B 52 352 139 HOH HOH . J 5 HOH B 53 353 16 HOH HOH . J 5 HOH B 54 354 122 HOH HOH . J 5 HOH B 55 355 13 HOH HOH . J 5 HOH B 56 356 106 HOH HOH . J 5 HOH B 57 357 27 HOH HOH . J 5 HOH B 58 358 44 HOH HOH . J 5 HOH B 59 359 111 HOH HOH . J 5 HOH B 60 360 124 HOH HOH . J 5 HOH B 61 361 131 HOH HOH . J 5 HOH B 62 362 108 HOH HOH . J 5 HOH B 63 363 113 HOH HOH . J 5 HOH B 64 364 130 HOH HOH . J 5 HOH B 65 365 110 HOH HOH . J 5 HOH B 66 366 116 HOH HOH . J 5 HOH B 67 367 94 HOH HOH . J 5 HOH B 68 368 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -20.337 _atom_site.Cartn_y 2.282 _atom_site.Cartn_z 7.63 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #