data_6M5W # _model_server_result.job_id 9KDDr6Y58mPBwWD8EIYp7Q _model_server_result.datetime_utc '2024-11-26 00:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6M5W # _exptl.entry_id 6M5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M5W _cell.length_a 152.749 _cell.length_b 152.749 _cell.length_c 235.933 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 76.3745 132.284514 0 3 'crystal symmetry operation' 7_556 y,x,-z+5/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 393.221667 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+5/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 76.3745 132.284514 393.221667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C23 _struct_conn.ptnr1_label_comp_id DXC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id DXC _struct_conn.ptnr1_auth_seq_id 502 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.33 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 83 n n C1 C6 DXC sing 84 n n C1 O2 DXC sing 85 n n C1 H1 DXC sing 86 n n C2 C3 DXC sing 87 n n C2 H22 DXC sing 88 n n C2 H21 DXC sing 89 n n C3 C4 DXC sing 90 n n C3 C7 DXC sing 91 n n C3 H3 DXC sing 92 n n C4 C5 DXC sing 93 n n C4 C10 DXC sing 94 n n C4 C18 DXC sing 95 n n C5 C6 DXC sing 96 n n C5 H52 DXC sing 97 n n C5 H51 DXC sing 98 n n C6 H62 DXC sing 99 n n C6 H61 DXC sing 100 n n C7 C8 DXC sing 101 n n C7 H72 DXC sing 102 n n C7 H71 DXC sing 103 n n C8 C9 DXC sing 104 n n C8 H82 DXC sing 105 n n C8 H81 DXC sing 106 n n C9 C10 DXC sing 107 n n C9 C11 DXC sing 108 n n C9 H9 DXC sing 109 n n C10 C14 DXC sing 110 n n C10 H10 DXC sing 111 n n C11 C12 DXC sing 112 n n C11 C15 DXC sing 113 n n C11 H11 DXC sing 114 n n C12 C13 DXC sing 115 n n C12 C17 DXC sing 116 n n C12 C20 DXC sing 117 n n C13 C14 DXC sing 118 n n C13 O1 DXC sing 119 n n C13 H13 DXC sing 120 n n C14 H142 DXC sing 121 n n C14 H141 DXC sing 122 n n C15 C16 DXC sing 123 n n C15 H152 DXC sing 124 n n C15 H151 DXC sing 125 n n C16 C17 DXC sing 126 n n C16 H162 DXC sing 127 n n C16 H161 DXC sing 128 n n C17 C19 DXC sing 129 n n C17 H17 DXC sing 130 n n C18 H183 DXC sing 131 n n C18 H182 DXC sing 132 n n C18 H181 DXC sing 133 n n C19 C21 DXC sing 134 n n C19 C24 DXC sing 135 n n C19 H19 DXC sing 136 n n O1 H1O1 DXC sing 137 n n O2 H2 DXC sing 138 n n C20 H203 DXC sing 139 n n C20 H202 DXC sing 140 n n C20 H201 DXC sing 141 n n C21 C22 DXC sing 142 n n C21 H212 DXC sing 143 n n C21 H211 DXC sing 144 n n C22 C23 DXC sing 145 n n C22 H222 DXC sing 146 n n C22 H221 DXC sing 147 n n C23 O3 DXC doub 148 n n C23 O4 DXC sing 149 n n O4 HO4 DXC sing 150 n n C24 H243 DXC sing 151 n n C24 H242 DXC sing 152 n n C24 H241 DXC sing 153 n n # _atom_sites.entry_id 6M5W _atom_sites.fract_transf_matrix[1][1] 0.006547 _atom_sites.fract_transf_matrix[1][2] 0.00378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 501 500 PLP PLP . C 3 DXC A 1 502 601 DXC DCA . D 4 GLY A 1 503 601 GLY DCA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . C 3 57.674 70.775 209.265 0.88 63.37 ? C1 DXC 502 A 1 HETATM 2 C C2 DXC . . . C 3 57.222 69.377 208.949 0.88 56.82 ? C2 DXC 502 A 1 HETATM 3 C C3 DXC . . . C 3 58.089 68.274 209.559 0.88 52.89 ? C3 DXC 502 A 1 HETATM 4 C C4 DXC . . . C 3 58.445 68.514 211.052 0.88 58.53 ? C4 DXC 502 A 1 HETATM 5 C C5 DXC . . . C 3 58.948 69.96 211.23 0.88 54.78 ? C5 DXC 502 A 1 HETATM 6 C C6 DXC . . . C 3 59.014 70.759 209.94 0.88 58.69 ? C6 DXC 502 A 1 HETATM 7 C C7 DXC . . . C 3 59.339 67.996 208.73 0.88 44.46 ? C7 DXC 502 A 1 HETATM 8 C C8 DXC . . . C 3 59.983 66.674 209.125 0.88 44.16 ? C8 DXC 502 A 1 HETATM 9 C C9 DXC . . . C 3 59.625 66.272 210.551 0.88 46.81 ? C9 DXC 502 A 1 HETATM 10 C C10 DXC . . . C 3 59.552 67.503 211.474 0.88 52.69 ? C10 DXC 502 A 1 HETATM 11 C C11 DXC . . . C 3 60.695 65.334 211.089 0.88 50.5 ? C11 DXC 502 A 1 HETATM 12 C C12 DXC . . . C 3 60.49 64.791 212.521 0.88 60.53 ? C12 DXC 502 A 1 HETATM 13 C C13 DXC . . . C 3 60.442 66.009 213.448 0.88 56.41 ? C13 DXC 502 A 1 HETATM 14 C C14 DXC . . . C 3 59.433 67.055 212.956 0.88 46.6 ? C14 DXC 502 A 1 HETATM 15 C C15 DXC . . . C 3 61.083 64.074 210.302 0.88 42.68 ? C15 DXC 502 A 1 HETATM 16 C C16 DXC . . . C 3 62.069 63.37 211.251 0.88 39.11 ? C16 DXC 502 A 1 HETATM 17 C C17 DXC . . . C 3 61.747 63.887 212.68 0.88 54.04 ? C17 DXC 502 A 1 HETATM 18 C C18 DXC . . . C 3 57.174 68.362 211.911 0.88 51.42 ? C18 DXC 502 A 1 HETATM 19 C C19 DXC . . . C 3 61.749 62.711 213.678 0.88 50.89 ? C19 DXC 502 A 1 HETATM 20 O O1 DXC . . . C 3 61.724 66.67 213.531 0.88 61.38 ? O1 DXC 502 A 1 HETATM 21 O O2 DXC . . . C 3 57.741 71.518 208.035 0.88 52.85 ? O2 DXC 502 A 1 HETATM 22 C C20 DXC . . . C 3 59.196 63.962 212.658 0.88 47.71 ? C20 DXC 502 A 1 HETATM 23 C C21 DXC . . . C 3 63.174 62.362 214.156 0.88 49.55 ? C21 DXC 502 A 1 HETATM 24 C C22 DXC . . . C 3 63.992 61.475 213.219 0.88 53.46 ? C22 DXC 502 A 1 HETATM 25 C C23 DXC . . . C 3 63.321 60.135 213.003 0.88 55.92 ? C23 DXC 502 A 1 HETATM 26 O O3 DXC . . . C 3 62.373 59.768 213.695 0.88 58.05 ? O3 DXC 502 A 1 HETATM 27 C C24 DXC . . . C 3 60.846 62.95 214.888 0.88 50.74 ? C24 DXC 502 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #