data_6M6X
#
_model_server_result.job_id            XBd7mkH9y78mNCK-y8PD0A 
_model_server_result.datetime_utc      '2024-11-23 19:21:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1106}' 
#
_entry.id    6M6X 
#
_exptl.entry_id    6M6X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              366.449 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6M6X 
_cell.length_a            106.14 
_cell.length_b            106.14 
_cell.length_c            303.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 K N N 
? 8 L N N 
? 8 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 155 C CYS 152 1_555 M C14 ODN . C ODN 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? 
covale ? covale2 C SG CYS 484 C CYS 539 1_555 K C14 ODN . C ODN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
covale ? covale3 C SG CYS 967 C CYS 1022 1_555 L C14 ODN . C ODN 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 D MG MG . A MG 301 1_555 F O2B GTP . A GTP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc4 D MG MG . A MG 301 1_555 F O2G GTP . A GTP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
#
_chem_comp.formula           'C20 H30 O6' 
_chem_comp.formula_weight    366.449 
_chem_comp.id                ODN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C13 ODN sing 296 n n 
C13 C12 ODN sing 297 n n 
C13 C17 ODN sing 298 n n 
O2 C11 ODN sing 299 n n 
C12 C11 ODN sing 300 n n 
C12 C15 ODN sing 301 n n 
C11 C10 ODN sing 302 n n 
C15 C16 ODN sing 303 n n 
C17 O3 ODN doub 304 n n 
C17 C10 ODN sing 305 n n 
O4 C18 ODN sing 306 n n 
C10 C18 ODN sing 307 n n 
C10 C9 ODN sing 308 n n 
C16 C9 ODN sing 309 n n 
C18 O1 ODN sing 310 n n 
C18 C19 ODN sing 311 n n 
O1 C8 ODN sing 312 n n 
C9 C7 ODN sing 313 n n 
O5 C19 ODN sing 314 n n 
C8 C7 ODN sing 315 n n 
C19 C6 ODN sing 316 n n 
C7 C6 ODN sing 317 n n 
C7 C ODN sing 318 n n 
C6 C3 ODN sing 319 n n 
O C ODN sing 320 n n 
C C1 ODN sing 321 n n 
C3 C4 ODN sing 322 n n 
C3 C5 ODN sing 323 n n 
C3 C2 ODN sing 324 n n 
C1 C2 ODN sing 325 n n 
O4 H1 ODN sing 326 n n 
C8 H2 ODN sing 327 n n 
C8 H3 ODN sing 328 n n 
C19 H4 ODN sing 329 n n 
O5 H5 ODN sing 330 n n 
C6 H6 ODN sing 331 n n 
C5 H7 ODN sing 332 n n 
C5 H8 ODN sing 333 n n 
C5 H9 ODN sing 334 n n 
C4 H10 ODN sing 335 n n 
C4 H11 ODN sing 336 n n 
C4 H12 ODN sing 337 n n 
C2 H13 ODN sing 338 n n 
C2 H14 ODN sing 339 n n 
C1 H15 ODN sing 340 n n 
C1 H16 ODN sing 341 n n 
C13 H17 ODN sing 342 n n 
C14 H18 ODN sing 343 n n 
C14 H19 ODN sing 344 n n 
C14 H20 ODN sing 345 n n 
C12 H21 ODN sing 346 n n 
C11 H22 ODN sing 347 n n 
O2 H23 ODN sing 348 n n 
C15 H24 ODN sing 349 n n 
C15 H25 ODN sing 350 n n 
C16 H26 ODN sing 351 n n 
C16 H27 ODN sing 352 n n 
C9 H28 ODN sing 353 n n 
C H29 ODN sing 354 n n 
O H30 ODN sing 355 n n 
#
_atom_sites.entry_id                     6M6X 
_atom_sites.fract_transf_matrix[1][1]    0.009422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009422 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG A 1 301 302 MG MG . 
E 5 EDO A 1 302 303 EDO EDO . 
F 6 GTP A 1 303 401 GTP GTP . 
G 7 CL C 1 1101 1104 CL CL . 
H 7 CL C 1 1102 1105 CL CL . 
I 7 CL C 1 1103 1106 CL CL . 
J 7 CL C 1 1104 1107 CL CL . 
K 8 ODN C 1 1105 1201 ODN OR1 . 
L 8 ODN C 1 1106 1301 ODN OR1 . 
M 8 ODN C 1 1107 1401 ODN OR1 . 
N 9 HOH A 1 401 5 HOH HOH . 
N 9 HOH A 2 402 8 HOH HOH . 
N 9 HOH A 3 403 2 HOH HOH . 
O 9 HOH C 1 1201 7 HOH HOH . 
O 9 HOH C 2 1202 12 HOH HOH . 
O 9 HOH C 3 1203 10 HOH HOH . 
O 9 HOH C 4 1204 9 HOH HOH . 
O 9 HOH C 5 1205 4 HOH HOH . 
O 9 HOH C 6 1206 11 HOH HOH . 
O 9 HOH C 7 1207 3 HOH HOH . 
O 9 HOH C 8 1208 1 HOH HOH . 
O 9 HOH C 9 1209 6 HOH HOH . 
O 9 HOH C 10 1210 14 HOH HOH . 
O 9 HOH C 11 1211 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 ODN . . . L 8 -51.185 37.269 -25.833 1 112.73 ? O3 ODN 1106 C 1 
HETATM 2 C C17 ODN . . . L 8 -50.863 36.12 -25.617 1 113.31 ? C17 ODN 1106 C 1 
HETATM 3 C C10 ODN . . . L 8 -51.663 34.934 -26.05 1 115.72 ? C10 ODN 1106 C 1 
HETATM 4 C C18 ODN . . . L 8 -53.173 34.998 -25.855 1 118.95 ? C18 ODN 1106 C 1 
HETATM 5 O O4 ODN . . . L 8 -53.464 35.425 -24.524 1 117.85 ? O4 ODN 1106 C 1 
HETATM 6 O O1 ODN . . . L 8 -53.688 33.696 -26.165 1 120.41 ? O1 ODN 1106 C 1 
HETATM 7 C C8 ODN . . . L 8 -53.198 33.16 -27.41 1 121.33 ? C8 ODN 1106 C 1 
HETATM 8 C C19 ODN . . . L 8 -53.847 35.963 -26.799 1 121.93 ? C19 ODN 1106 C 1 
HETATM 9 O O5 ODN . . . L 8 -53.415 37.306 -26.572 1 122.26 ? O5 ODN 1106 C 1 
HETATM 10 C C6 ODN . . . L 8 -53.547 35.497 -28.232 1 123.55 ? C6 ODN 1106 C 1 
HETATM 11 C C3 ODN . . . L 8 -54.855 35.236 -29.014 1 125.76 ? C3 ODN 1106 C 1 
HETATM 12 C C5 ODN . . . L 8 -55.483 36.608 -29.331 1 126.26 ? C5 ODN 1106 C 1 
HETATM 13 C C4 ODN . . . L 8 -55.885 34.362 -28.261 1 126.17 ? C4 ODN 1106 C 1 
HETATM 14 C C2 ODN . . . L 8 -54.548 34.52 -30.349 1 124.99 ? C2 ODN 1106 C 1 
HETATM 15 C C1 ODN . . . L 8 -53.08 34.566 -30.754 1 122.39 ? C1 ODN 1106 C 1 
HETATM 16 C C13 ODN . . . L 8 -49.607 35.7 -24.919 1 109.9 ? C13 ODN 1106 C 1 
HETATM 17 C C14 ODN . . . L 8 -48.385 36.451 -25.418 1 106.05 ? C14 ODN 1106 C 1 
HETATM 18 C C12 ODN . . . L 8 -49.615 34.191 -25.17 1 111 ? C12 ODN 1106 C 1 
HETATM 19 C C11 ODN . . . L 8 -51.083 33.89 -25.121 1 112.94 ? C11 ODN 1106 C 1 
HETATM 20 O O2 ODN . . . L 8 -51.583 34.134 -23.815 1 112.04 ? O2 ODN 1106 C 1 
HETATM 21 C C15 ODN . . . L 8 -49.103 33.721 -26.532 1 111.96 ? C15 ODN 1106 C 1 
HETATM 22 C C16 ODN . . . L 8 -50.131 33.706 -27.667 1 114.01 ? C16 ODN 1106 C 1 
HETATM 23 C C9 ODN . . . L 8 -51.291 34.702 -27.513 1 117.33 ? C9 ODN 1106 C 1 
HETATM 24 C C7 ODN . . . L 8 -52.574 34.293 -28.245 1 121.01 ? C7 ODN 1106 C 1 
HETATM 25 C C ODN . . . L 8 -52.211 33.894 -29.695 1 120.4 ? C ODN 1106 C 1 
HETATM 26 O O ODN . . . L 8 -52.301 32.48 -29.876 1 116.79 ? O ODN 1106 C 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#