data_6M6X # _model_server_result.job_id 6dIk2PnnwTa7dVuSKcHctQ _model_server_result.datetime_utc '2024-11-23 19:50:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 6M6X # _exptl.entry_id 6M6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M6X _cell.length_a 106.14 _cell.length_b 106.14 _cell.length_c 303.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CYS 155 C CYS 152 1_555 M C14 ODN . C ODN 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale2 C SG CYS 484 C CYS 539 1_555 K C14 ODN . C ODN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale3 C SG CYS 967 C CYS 1022 1_555 L C14 ODN . C ODN 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 D MG MG . A MG 301 1_555 F O2B GTP . A GTP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 D MG MG . A MG 301 1_555 F O2G GTP . A GTP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 138 n n PG O2G GTP sing 139 n n PG O3G GTP sing 140 n n PG O3B GTP sing 141 n n O2G HOG2 GTP sing 142 n n O3G HOG3 GTP sing 143 n n O3B PB GTP sing 144 n n PB O1B GTP doub 145 n n PB O2B GTP sing 146 n n PB O3A GTP sing 147 n n O2B HOB2 GTP sing 148 n n O3A PA GTP sing 149 n n PA O1A GTP doub 150 n n PA O2A GTP sing 151 n n PA O5' GTP sing 152 n n O2A HOA2 GTP sing 153 n n O5' C5' GTP sing 154 n n C5' C4' GTP sing 155 n n C5' H5' GTP sing 156 n n C5' "H5''" GTP sing 157 n n C4' O4' GTP sing 158 n n C4' C3' GTP sing 159 n n C4' H4' GTP sing 160 n n O4' C1' GTP sing 161 n n C3' O3' GTP sing 162 n n C3' C2' GTP sing 163 n n C3' H3' GTP sing 164 n n O3' HO3' GTP sing 165 n n C2' O2' GTP sing 166 n n C2' C1' GTP sing 167 n n C2' H2' GTP sing 168 n n O2' HO2' GTP sing 169 n n C1' N9 GTP sing 170 n n C1' H1' GTP sing 171 n n N9 C8 GTP sing 172 n y N9 C4 GTP sing 173 n y C8 N7 GTP doub 174 n y C8 H8 GTP sing 175 n n N7 C5 GTP sing 176 n y C5 C6 GTP sing 177 n n C5 C4 GTP doub 178 n y C6 O6 GTP doub 179 n n C6 N1 GTP sing 180 n n N1 C2 GTP sing 181 n n N1 HN1 GTP sing 182 n n C2 N2 GTP sing 183 n n C2 N3 GTP doub 184 n n N2 HN21 GTP sing 185 n n N2 HN22 GTP sing 186 n n N3 C4 GTP sing 187 n n # _atom_sites.entry_id 6M6X _atom_sites.fract_transf_matrix[1][1] 0.009422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 301 302 MG MG . E 5 EDO A 1 302 303 EDO EDO . F 6 GTP A 1 303 401 GTP GTP . G 7 CL C 1 1101 1104 CL CL . H 7 CL C 1 1102 1105 CL CL . I 7 CL C 1 1103 1106 CL CL . J 7 CL C 1 1104 1107 CL CL . K 8 ODN C 1 1105 1201 ODN OR1 . L 8 ODN C 1 1106 1301 ODN OR1 . M 8 ODN C 1 1107 1401 ODN OR1 . N 9 HOH A 1 401 5 HOH HOH . N 9 HOH A 2 402 8 HOH HOH . N 9 HOH A 3 403 2 HOH HOH . O 9 HOH C 1 1201 7 HOH HOH . O 9 HOH C 2 1202 12 HOH HOH . O 9 HOH C 3 1203 10 HOH HOH . O 9 HOH C 4 1204 9 HOH HOH . O 9 HOH C 5 1205 4 HOH HOH . O 9 HOH C 6 1206 11 HOH HOH . O 9 HOH C 7 1207 3 HOH HOH . O 9 HOH C 8 1208 1 HOH HOH . O 9 HOH C 9 1209 6 HOH HOH . O 9 HOH C 10 1210 14 HOH HOH . O 9 HOH C 11 1211 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 6 -15.876 59.284 -28.605 1 76.09 ? PG GTP 303 A 1 HETATM 2 O O1G GTP . . . F 6 -17.134 59.239 -27.77 1 79.59 ? O1G GTP 303 A 1 HETATM 3 O O2G GTP . . . F 6 -15.138 60.593 -28.507 1 74.91 ? O2G GTP 303 A 1 HETATM 4 O O3G GTP . . . F 6 -16.127 58.85 -30.03 1 77.19 ? O3G GTP 303 A 1 HETATM 5 O O3B GTP . . . F 6 -14.894 58.202 -27.95 1 72.93 ? O3B GTP 303 A 1 HETATM 6 P PB GTP . . . F 6 -13.381 57.756 -28.204 1 71.71 ? PB GTP 303 A 1 HETATM 7 O O1B GTP . . . F 6 -13.372 56.589 -29.136 1 71.88 ? O1B GTP 303 A 1 HETATM 8 O O2B GTP . . . F 6 -12.54 58.955 -28.514 1 70.15 ? O2B GTP 303 A 1 HETATM 9 O O3A GTP . . . F 6 -13.004 57.185 -26.756 1 71.83 ? O3A GTP 303 A 1 HETATM 10 P PA GTP . . . F 6 -11.814 57.553 -25.753 1 71.94 ? PA GTP 303 A 1 HETATM 11 O O1A GTP . . . F 6 -10.512 57.233 -26.401 1 70.14 ? O1A GTP 303 A 1 HETATM 12 O O2A GTP . . . F 6 -12.046 58.952 -25.286 1 75.55 ? O2A GTP 303 A 1 HETATM 13 O O5' GTP . . . F 6 -12.073 56.554 -24.53 1 72.79 ? O5' GTP 303 A 1 HETATM 14 C C5' GTP . . . F 6 -11.833 55.134 -24.645 1 71.87 ? C5' GTP 303 A 1 HETATM 15 C C4' GTP . . . F 6 -11.898 54.507 -23.274 1 73.34 ? C4' GTP 303 A 1 HETATM 16 O O4' GTP . . . F 6 -11.301 53.187 -23.336 1 73.65 ? O4' GTP 303 A 1 HETATM 17 C C3' GTP . . . F 6 -11.096 55.21 -22.175 1 74.39 ? C3' GTP 303 A 1 HETATM 18 O O3' GTP . . . F 6 -11.534 54.798 -20.889 1 74.92 ? O3' GTP 303 A 1 HETATM 19 C C2' GTP . . . F 6 -9.694 54.703 -22.517 1 73.28 ? C2' GTP 303 A 1 HETATM 20 O O2' GTP . . . F 6 -8.738 54.838 -21.492 1 74.6 ? O2' GTP 303 A 1 HETATM 21 C C1' GTP . . . F 6 -9.996 53.234 -22.8 1 73.87 ? C1' GTP 303 A 1 HETATM 22 N N9 GTP . . . F 6 -9.069 52.637 -23.753 1 72.57 ? N9 GTP 303 A 1 HETATM 23 C C8 GTP . . . F 6 -8.606 53.215 -24.908 1 71.01 ? C8 GTP 303 A 1 HETATM 24 N N7 GTP . . . F 6 -7.759 52.461 -25.563 1 70.93 ? N7 GTP 303 A 1 HETATM 25 C C5 GTP . . . F 6 -7.655 51.315 -24.786 1 72.29 ? C5 GTP 303 A 1 HETATM 26 C C6 GTP . . . F 6 -6.881 50.147 -24.992 1 74.35 ? C6 GTP 303 A 1 HETATM 27 O O6 GTP . . . F 6 -6.109 49.892 -25.926 1 75.09 ? O6 GTP 303 A 1 HETATM 28 N N1 GTP . . . F 6 -7.061 49.233 -23.955 1 75.56 ? N1 GTP 303 A 1 HETATM 29 C C2 GTP . . . F 6 -7.885 49.41 -22.873 1 74.7 ? C2 GTP 303 A 1 HETATM 30 N N2 GTP . . . F 6 -7.932 48.401 -21.995 1 78.84 ? N2 GTP 303 A 1 HETATM 31 N N3 GTP . . . F 6 -8.618 50.504 -22.676 1 72.34 ? N3 GTP 303 A 1 HETATM 32 C C4 GTP . . . F 6 -8.454 51.411 -23.667 1 71.83 ? C4 GTP 303 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 909 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 32 #