data_6M79 # _model_server_result.job_id 3YmXqV0cSM4UgfOYZrE9_A _model_server_result.datetime_utc '2024-11-14 20:02:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 6M79 # _exptl.entry_id 6M79 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M79 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OD1 ASP 406 A ASP 406 1_555 E N6 AMP . A AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale2 B OD1 ASP 406 B ASP 406 1_555 G N6 AMP . B AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale3 C OD1 ASP 406 C ASP 406 1_555 I N6 AMP . C AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale4 D OD1 ASP 406 D ASP 406 1_555 K N6 AMP . D AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M79 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 701 701 AMP AMP . F 3 FAD A 1 702 702 FAD FAD . G 2 AMP B 1 701 701 AMP AMP . H 3 FAD B 1 702 702 FAD FAD . I 2 AMP C 1 701 701 AMP AMP . J 3 FAD C 1 702 702 FAD FAD . K 2 AMP D 1 701 701 AMP AMP . L 3 FAD D 1 702 702 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 2 144.389 160.178 144.646 1 11.61 ? P AMP 701 A 1 HETATM 2 O O1P AMP . . . E 2 144.475 160.152 143.144 1 11.61 ? O1P AMP 701 A 1 HETATM 3 O O2P AMP . . . E 2 142.981 160.245 145.182 1 11.61 ? O2P AMP 701 A 1 HETATM 4 O O3P AMP . . . E 2 145.361 161.128 145.297 1 11.61 ? O3P AMP 701 A 1 HETATM 5 O O5' AMP . . . E 2 144.912 158.732 145.064 1 11.61 ? O5' AMP 701 A 1 HETATM 6 C C5' AMP . . . E 2 146.028 158.146 144.408 1 11.61 ? C5' AMP 701 A 1 HETATM 7 C C4' AMP . . . E 2 146.726 157.137 145.285 1 11.61 ? C4' AMP 701 A 1 HETATM 8 O O4' AMP . . . E 2 148.145 157.126 144.971 1 11.61 ? O4' AMP 701 A 1 HETATM 9 C C3' AMP . . . E 2 146.667 157.408 146.779 1 11.61 ? C3' AMP 701 A 1 HETATM 10 O O3' AMP . . . E 2 145.49 156.901 147.377 1 11.61 ? O3' AMP 701 A 1 HETATM 11 C C2' AMP . . . E 2 147.944 156.763 147.294 1 11.61 ? C2' AMP 701 A 1 HETATM 12 O O2' AMP . . . E 2 147.79 155.356 147.387 1 11.61 ? O2' AMP 701 A 1 HETATM 13 C C1' AMP . . . E 2 148.905 157.065 146.154 1 11.61 ? C1' AMP 701 A 1 HETATM 14 N N9 AMP . . . E 2 149.565 158.373 146.322 1 11.61 ? N9 AMP 701 A 1 HETATM 15 C C8 AMP . . . E 2 149.115 159.514 145.773 1 11.61 ? C8 AMP 701 A 1 HETATM 16 N N7 AMP . . . E 2 149.908 160.561 146.078 1 11.61 ? N7 AMP 701 A 1 HETATM 17 C C5 AMP . . . E 2 150.903 160.091 146.841 1 11.61 ? C5 AMP 701 A 1 HETATM 18 C C6 AMP . . . E 2 152.083 160.687 147.491 1 11.61 ? C6 AMP 701 A 1 HETATM 19 N N6 AMP . . . E 2 152.322 162.027 147.378 1 11.61 ? N6 AMP 701 A 1 HETATM 20 N N1 AMP . . . E 2 152.881 159.868 148.202 1 11.61 ? N1 AMP 701 A 1 HETATM 21 C C2 AMP . . . E 2 152.617 158.554 148.308 1 11.61 ? C2 AMP 701 A 1 HETATM 22 N N3 AMP . . . E 2 151.563 157.945 147.74 1 11.61 ? N3 AMP 701 A 1 HETATM 23 C C4 AMP . . . E 2 150.68 158.65 147.001 1 11.61 ? C4 AMP 701 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #