data_6M79
#
_model_server_result.job_id            UVCsp-xytRrxT8slxh0scg 
_model_server_result.datetime_utc      '2024-11-14 20:12:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":701}' 
#
_entry.id    6M79 
#
_exptl.entry_id    6M79 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6M79 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD1 ASP 406 A ASP 406 1_555 E N6 AMP . A AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
covale ? covale2 B OD1 ASP 406 B ASP 406 1_555 G N6 AMP . B AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
covale ? covale3 C OD1 ASP 406 C ASP 406 1_555 I N6 AMP . C AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
covale ? covale4 D OD1 ASP 406 D ASP 406 1_555 K N6 AMP . D AMP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6M79 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AMP A 1 701 701 AMP AMP . 
F 3 FAD A 1 702 702 FAD FAD . 
G 2 AMP B 1 701 701 AMP AMP . 
H 3 FAD B 1 702 702 FAD FAD . 
I 2 AMP C 1 701 701 AMP AMP . 
J 3 FAD C 1 702 702 FAD FAD . 
K 2 AMP D 1 701 701 AMP AMP . 
L 3 FAD D 1 702 702 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . I 2 122.004 106.223 144.644 1 12.51 ? P AMP 701 C 1 
HETATM 2 O O1P AMP . . . I 2 121.918 106.248 143.142 1 12.51 ? O1P AMP 701 C 1 
HETATM 3 O O2P AMP . . . I 2 123.412 106.155 145.18 1 12.51 ? O2P AMP 701 C 1 
HETATM 4 O O3P AMP . . . I 2 121.032 105.272 145.295 1 12.51 ? O3P AMP 701 C 1 
HETATM 5 O O5' AMP . . . I 2 121.481 107.668 145.062 1 12.51 ? O5' AMP 701 C 1 
HETATM 6 C C5' AMP . . . I 2 120.366 108.254 144.407 1 12.51 ? C5' AMP 701 C 1 
HETATM 7 C C4' AMP . . . I 2 119.667 109.264 145.283 1 12.51 ? C4' AMP 701 C 1 
HETATM 8 O O4' AMP . . . I 2 118.249 109.274 144.969 1 12.51 ? O4' AMP 701 C 1 
HETATM 9 C C3' AMP . . . I 2 119.726 108.992 146.777 1 12.51 ? C3' AMP 701 C 1 
HETATM 10 O O3' AMP . . . I 2 120.904 109.499 147.375 1 12.51 ? O3' AMP 701 C 1 
HETATM 11 C C2' AMP . . . I 2 118.45 109.638 147.292 1 12.51 ? C2' AMP 701 C 1 
HETATM 12 O O2' AMP . . . I 2 118.604 111.044 147.386 1 12.51 ? O2' AMP 701 C 1 
HETATM 13 C C1' AMP . . . I 2 117.488 109.335 146.153 1 12.51 ? C1' AMP 701 C 1 
HETATM 14 N N9 AMP . . . I 2 116.829 108.027 146.32 1 12.51 ? N9 AMP 701 C 1 
HETATM 15 C C8 AMP . . . I 2 117.278 106.887 145.772 1 12.51 ? C8 AMP 701 C 1 
HETATM 16 N N7 AMP . . . I 2 116.485 105.839 146.076 1 12.51 ? N7 AMP 701 C 1 
HETATM 17 C C5 AMP . . . I 2 115.491 106.309 146.839 1 12.51 ? C5 AMP 701 C 1 
HETATM 18 C C6 AMP . . . I 2 114.31 105.713 147.489 1 12.51 ? C6 AMP 701 C 1 
HETATM 19 N N6 AMP . . . I 2 114.071 104.374 147.376 1 12.51 ? N6 AMP 701 C 1 
HETATM 20 N N1 AMP . . . I 2 113.512 106.533 148.2 1 12.51 ? N1 AMP 701 C 1 
HETATM 21 C C2 AMP . . . I 2 113.776 107.847 148.307 1 12.51 ? C2 AMP 701 C 1 
HETATM 22 N N3 AMP . . . I 2 114.83 108.455 147.738 1 12.51 ? N3 AMP 701 C 1 
HETATM 23 C C4 AMP . . . I 2 115.714 107.751 146.999 1 12.51 ? C4 AMP 701 C 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           656 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#