data_6M7G # _model_server_result.job_id o2lyJdD8RspRN_zBbVBR0g _model_server_result.datetime_utc '2024-12-24 17:51:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":801}' # _entry.id 6M7G # _exptl.entry_id 6M7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.127 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHINOTHRICIN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.99 _cell.angle_gamma 90 _cell.entry_id 6M7G _cell.length_a 53.841 _cell.length_b 142.693 _cell.length_c 178.308 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,U 1 1 D,P,X 1 2 B,C,N,O,V,W 2 1 E,I,Q,Y,CA 3 1 F,J,R,Z,DA 4 1 G,L,T,AA,FA 5 1 H,S,BA 6 1 K,EA 6 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 53.841 0 0 3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 0.031121 71.3465 178.307997 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C5 H12 N O4 P' _chem_comp.formula_weight 181.127 _chem_comp.id PPQ _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHINOTHRICIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-AMINO-4-(HYDROXYMETHYL-PHOSPHINYL)BUTANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NP CAP PPQ sing 247 n n NP HNP1 PPQ sing 248 n n NP HNP2 PPQ sing 249 n n CAP CBP PPQ sing 250 n n CAP CP PPQ sing 251 n n CAP HAP PPQ sing 252 n n CBP CGP PPQ sing 253 n n CBP HBP1 PPQ sing 254 n n CBP HBP2 PPQ sing 255 n n CGP PDP PPQ sing 256 n n CGP HGP1 PPQ sing 257 n n CGP HGP2 PPQ sing 258 n n PDP CEP PPQ sing 259 n n PDP OEA PPQ doub 260 n n PDP OEB PPQ sing 261 n n CEP HEP1 PPQ sing 262 n n CEP HEP2 PPQ sing 263 n n CEP HEP3 PPQ sing 264 n n OEB HEB PPQ sing 265 n n CP OP PPQ doub 266 n n CP OTP PPQ sing 267 n n OTP HTP PPQ sing 268 n n # _atom_sites.entry_id 6M7G _atom_sites.fract_transf_matrix[1][1] 0.018573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 PPQ A 1 801 801 PPQ PPQ . N 2 PPQ C 1 801 801 PPQ PPQ . O 2 PPQ C 1 802 801 PPQ PPQ . P 2 PPQ D 1 801 801 PPQ PPQ . Q 2 PPQ E 1 801 801 PPQ PPQ . R 2 PPQ F 1 801 801 PPQ PPQ . S 2 PPQ H 1 801 801 PPQ PPQ . T 2 PPQ L 1 801 801 PPQ PPQ . U 3 HOH A 1 901 129 HOH HOH . U 3 HOH A 2 902 66 HOH HOH . U 3 HOH A 3 903 205 HOH HOH . U 3 HOH A 4 904 226 HOH HOH . U 3 HOH A 5 905 215 HOH HOH . U 3 HOH A 6 906 235 HOH HOH . U 3 HOH A 7 907 238 HOH HOH . U 3 HOH A 8 908 117 HOH HOH . U 3 HOH A 9 909 144 HOH HOH . U 3 HOH A 10 910 189 HOH HOH . U 3 HOH A 11 911 181 HOH HOH . U 3 HOH A 12 912 19 HOH HOH . U 3 HOH A 13 913 246 HOH HOH . U 3 HOH A 14 914 70 HOH HOH . U 3 HOH A 15 915 53 HOH HOH . U 3 HOH A 16 916 178 HOH HOH . U 3 HOH A 17 917 214 HOH HOH . U 3 HOH A 18 918 155 HOH HOH . U 3 HOH A 19 919 127 HOH HOH . U 3 HOH A 20 920 94 HOH HOH . U 3 HOH A 21 921 240 HOH HOH . V 3 HOH B 1 301 62 HOH HOH . V 3 HOH B 2 302 123 HOH HOH . V 3 HOH B 3 303 228 HOH HOH . V 3 HOH B 4 304 5 HOH HOH . V 3 HOH B 5 305 51 HOH HOH . V 3 HOH B 6 306 195 HOH HOH . V 3 HOH B 7 307 52 HOH HOH . V 3 HOH B 8 308 219 HOH HOH . V 3 HOH B 9 309 139 HOH HOH . V 3 HOH B 10 310 166 HOH HOH . V 3 HOH B 11 311 104 HOH HOH . V 3 HOH B 12 312 15 HOH HOH . V 3 HOH B 13 313 252 HOH HOH . V 3 HOH B 14 314 103 HOH HOH . V 3 HOH B 15 315 186 HOH HOH . V 3 HOH B 16 316 200 HOH HOH . W 3 HOH C 1 901 87 HOH HOH . W 3 HOH C 2 902 179 HOH HOH . W 3 HOH C 3 903 163 HOH HOH . W 3 HOH C 4 904 213 HOH HOH . W 3 HOH C 5 905 100 HOH HOH . W 3 HOH C 6 906 49 HOH HOH . W 3 HOH C 7 907 223 HOH HOH . W 3 HOH C 8 908 209 HOH HOH . W 3 HOH C 9 909 8 HOH HOH . W 3 HOH C 10 910 37 HOH HOH . W 3 HOH C 11 911 185 HOH HOH . W 3 HOH C 12 912 4 HOH HOH . W 3 HOH C 13 913 225 HOH HOH . W 3 HOH C 14 914 251 HOH HOH . W 3 HOH C 15 915 249 HOH HOH . W 3 HOH C 16 916 158 HOH HOH . W 3 HOH C 17 917 134 HOH HOH . X 3 HOH D 1 901 146 HOH HOH . X 3 HOH D 2 902 192 HOH HOH . X 3 HOH D 3 903 237 HOH HOH . X 3 HOH D 4 904 84 HOH HOH . X 3 HOH D 5 905 34 HOH HOH . X 3 HOH D 6 906 108 HOH HOH . X 3 HOH D 7 907 191 HOH HOH . X 3 HOH D 8 908 180 HOH HOH . Y 3 HOH E 1 901 68 HOH HOH . Y 3 HOH E 2 902 42 HOH HOH . Y 3 HOH E 3 903 47 HOH HOH . Y 3 HOH E 4 904 56 HOH HOH . Y 3 HOH E 5 905 74 HOH HOH . Y 3 HOH E 6 906 43 HOH HOH . Y 3 HOH E 7 907 153 HOH HOH . Y 3 HOH E 8 908 149 HOH HOH . Y 3 HOH E 9 909 172 HOH HOH . Y 3 HOH E 10 910 138 HOH HOH . Y 3 HOH E 11 911 75 HOH HOH . Y 3 HOH E 12 912 165 HOH HOH . Y 3 HOH E 13 913 122 HOH HOH . Y 3 HOH E 14 914 27 HOH HOH . Y 3 HOH E 15 915 216 HOH HOH . Y 3 HOH E 16 916 10 HOH HOH . Y 3 HOH E 17 917 184 HOH HOH . Y 3 HOH E 18 918 79 HOH HOH . Y 3 HOH E 19 919 198 HOH HOH . Y 3 HOH E 20 920 171 HOH HOH . Y 3 HOH E 21 921 164 HOH HOH . Y 3 HOH E 22 922 107 HOH HOH . Z 3 HOH F 1 901 245 HOH HOH . Z 3 HOH F 2 902 71 HOH HOH . Z 3 HOH F 3 903 125 HOH HOH . Z 3 HOH F 4 904 199 HOH HOH . Z 3 HOH F 5 905 169 HOH HOH . Z 3 HOH F 6 906 31 HOH HOH . Z 3 HOH F 7 907 14 HOH HOH . Z 3 HOH F 8 908 96 HOH HOH . Z 3 HOH F 9 909 89 HOH HOH . Z 3 HOH F 10 910 187 HOH HOH . Z 3 HOH F 11 911 81 HOH HOH . Z 3 HOH F 12 912 130 HOH HOH . Z 3 HOH F 13 913 17 HOH HOH . Z 3 HOH F 14 914 150 HOH HOH . Z 3 HOH F 15 915 3 HOH HOH . Z 3 HOH F 16 916 202 HOH HOH . Z 3 HOH F 17 917 241 HOH HOH . Z 3 HOH F 18 918 159 HOH HOH . Z 3 HOH F 19 919 242 HOH HOH . Z 3 HOH F 20 920 250 HOH HOH . Z 3 HOH F 21 921 143 HOH HOH . AA 3 HOH G 1 301 212 HOH HOH . AA 3 HOH G 2 302 162 HOH HOH . AA 3 HOH G 3 303 119 HOH HOH . AA 3 HOH G 4 304 161 HOH HOH . AA 3 HOH G 5 305 170 HOH HOH . AA 3 HOH G 6 306 33 HOH HOH . AA 3 HOH G 7 307 167 HOH HOH . AA 3 HOH G 8 308 38 HOH HOH . AA 3 HOH G 9 309 73 HOH HOH . AA 3 HOH G 10 310 147 HOH HOH . AA 3 HOH G 11 311 102 HOH HOH . AA 3 HOH G 12 312 63 HOH HOH . AA 3 HOH G 13 313 182 HOH HOH . AA 3 HOH G 14 314 35 HOH HOH . AA 3 HOH G 15 315 168 HOH HOH . AA 3 HOH G 16 316 57 HOH HOH . AA 3 HOH G 17 317 29 HOH HOH . AA 3 HOH G 18 318 210 HOH HOH . AA 3 HOH G 19 319 229 HOH HOH . AA 3 HOH G 20 320 124 HOH HOH . BA 3 HOH H 1 901 157 HOH HOH . BA 3 HOH H 2 902 105 HOH HOH . BA 3 HOH H 3 903 220 HOH HOH . BA 3 HOH H 4 904 83 HOH HOH . BA 3 HOH H 5 905 148 HOH HOH . BA 3 HOH H 6 906 115 HOH HOH . BA 3 HOH H 7 907 113 HOH HOH . BA 3 HOH H 8 908 25 HOH HOH . BA 3 HOH H 9 909 9 HOH HOH . BA 3 HOH H 10 910 95 HOH HOH . CA 3 HOH I 1 301 137 HOH HOH . CA 3 HOH I 2 302 190 HOH HOH . CA 3 HOH I 3 303 244 HOH HOH . CA 3 HOH I 4 304 131 HOH HOH . CA 3 HOH I 5 305 116 HOH HOH . CA 3 HOH I 6 306 196 HOH HOH . CA 3 HOH I 7 307 121 HOH HOH . CA 3 HOH I 8 308 82 HOH HOH . CA 3 HOH I 9 309 232 HOH HOH . CA 3 HOH I 10 310 23 HOH HOH . CA 3 HOH I 11 311 142 HOH HOH . CA 3 HOH I 12 312 152 HOH HOH . CA 3 HOH I 13 313 58 HOH HOH . CA 3 HOH I 14 314 45 HOH HOH . CA 3 HOH I 15 315 98 HOH HOH . CA 3 HOH I 16 316 7 HOH HOH . CA 3 HOH I 17 317 22 HOH HOH . DA 3 HOH J 1 301 230 HOH HOH . DA 3 HOH J 2 302 239 HOH HOH . DA 3 HOH J 3 303 32 HOH HOH . DA 3 HOH J 4 304 44 HOH HOH . DA 3 HOH J 5 305 132 HOH HOH . DA 3 HOH J 6 306 50 HOH HOH . DA 3 HOH J 7 307 194 HOH HOH . DA 3 HOH J 8 308 21 HOH HOH . DA 3 HOH J 9 309 120 HOH HOH . DA 3 HOH J 10 310 112 HOH HOH . DA 3 HOH J 11 311 78 HOH HOH . DA 3 HOH J 12 312 48 HOH HOH . DA 3 HOH J 13 313 69 HOH HOH . DA 3 HOH J 14 314 28 HOH HOH . DA 3 HOH J 15 315 11 HOH HOH . DA 3 HOH J 16 316 173 HOH HOH . DA 3 HOH J 17 317 211 HOH HOH . DA 3 HOH J 18 318 204 HOH HOH . DA 3 HOH J 19 319 6 HOH HOH . DA 3 HOH J 20 320 233 HOH HOH . DA 3 HOH J 21 321 224 HOH HOH . DA 3 HOH J 22 322 133 HOH HOH . DA 3 HOH J 23 323 151 HOH HOH . DA 3 HOH J 24 324 141 HOH HOH . EA 3 HOH K 1 301 156 HOH HOH . EA 3 HOH K 2 302 60 HOH HOH . EA 3 HOH K 3 303 13 HOH HOH . EA 3 HOH K 4 304 183 HOH HOH . EA 3 HOH K 5 305 109 HOH HOH . EA 3 HOH K 6 306 18 HOH HOH . EA 3 HOH K 7 307 77 HOH HOH . EA 3 HOH K 8 308 201 HOH HOH . EA 3 HOH K 9 309 118 HOH HOH . EA 3 HOH K 10 310 92 HOH HOH . EA 3 HOH K 11 311 221 HOH HOH . EA 3 HOH K 12 312 234 HOH HOH . EA 3 HOH K 13 313 101 HOH HOH . EA 3 HOH K 14 314 30 HOH HOH . EA 3 HOH K 15 315 41 HOH HOH . EA 3 HOH K 16 316 145 HOH HOH . EA 3 HOH K 17 317 36 HOH HOH . EA 3 HOH K 18 318 135 HOH HOH . EA 3 HOH K 19 319 222 HOH HOH . EA 3 HOH K 20 320 175 HOH HOH . EA 3 HOH K 21 321 174 HOH HOH . EA 3 HOH K 22 322 203 HOH HOH . EA 3 HOH K 23 323 64 HOH HOH . EA 3 HOH K 24 324 54 HOH HOH . EA 3 HOH K 25 325 93 HOH HOH . EA 3 HOH K 26 326 86 HOH HOH . FA 3 HOH L 1 901 65 HOH HOH . FA 3 HOH L 2 902 20 HOH HOH . FA 3 HOH L 3 903 128 HOH HOH . FA 3 HOH L 4 904 59 HOH HOH . FA 3 HOH L 5 905 136 HOH HOH . FA 3 HOH L 6 906 12 HOH HOH . FA 3 HOH L 7 907 16 HOH HOH . FA 3 HOH L 8 908 55 HOH HOH . FA 3 HOH L 9 909 218 HOH HOH . FA 3 HOH L 10 910 72 HOH HOH . FA 3 HOH L 11 911 91 HOH HOH . FA 3 HOH L 12 912 99 HOH HOH . FA 3 HOH L 13 913 140 HOH HOH . FA 3 HOH L 14 914 176 HOH HOH . FA 3 HOH L 15 915 188 HOH HOH . FA 3 HOH L 16 916 24 HOH HOH . FA 3 HOH L 17 917 154 HOH HOH . FA 3 HOH L 18 918 114 HOH HOH . FA 3 HOH L 19 919 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NP PPQ . . . S 2 -1.966 87.034 79.83 1 51.18 ? NP PPQ 801 H 1 HETATM 2 C CAP PPQ . . . S 2 -1.194 88.197 79.543 1 54.81 ? CAP PPQ 801 H 1 HETATM 3 C CBP PPQ . . . S 2 0.12 87.779 78.912 1 45.47 ? CBP PPQ 801 H 1 HETATM 4 C CGP PPQ . . . S 2 -0.082 86.563 78.026 1 54.74 ? CGP PPQ 801 H 1 HETATM 5 P PDP PPQ . . . S 2 0.879 85.129 78.607 1 61.92 ? PDP PPQ 801 H 1 HETATM 6 C CEP PPQ . . . S 2 0.043 84.356 80.019 1 32.43 ? CEP PPQ 801 H 1 HETATM 7 O OEA PPQ . . . S 2 0.96 84.063 77.442 1 58.95 ? OEA PPQ 801 H 1 HETATM 8 O OEB PPQ . . . S 2 2.255 85.551 78.975 1 45.75 ? OEB PPQ 801 H 1 HETATM 9 C CP PPQ . . . S 2 -1.986 89.127 78.642 1 60.12 ? CP PPQ 801 H 1 HETATM 10 O OP PPQ . . . S 2 -1.988 88.971 77.389 1 59.45 ? OP PPQ 801 H 1 HETATM 11 O OTP PPQ . . . S 2 -2.658 90.07 79.15 1 50.11 ? OTP PPQ 801 H 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 572 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #