data_6M7I # _model_server_result.job_id NwiIvSEHlFz98c5AlSoUIg _model_server_result.datetime_utc '2024-10-10 09:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6M7I # _exptl.entry_id 6M7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M7I _cell.length_a 56.743 _cell.length_b 59.244 _cell.length_c 76.277 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 234 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 238 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6M7I _atom_sites.fract_transf_matrix[1][1] 0.017623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J84 A 1 301 4 J84 QC1 . C 2 J84 A 1 302 2 J84 QC1 . D 2 J84 A 1 303 1 J84 QC1 . E 2 J84 A 1 304 3 J84 QC1 . F 3 GOL A 1 305 5 GOL GOL . G 4 HOH A 1 401 187 HOH HOH . G 4 HOH A 2 402 24 HOH HOH . G 4 HOH A 3 403 105 HOH HOH . G 4 HOH A 4 404 182 HOH HOH . G 4 HOH A 5 405 170 HOH HOH . G 4 HOH A 6 406 159 HOH HOH . G 4 HOH A 7 407 73 HOH HOH . G 4 HOH A 8 408 194 HOH HOH . G 4 HOH A 9 409 131 HOH HOH . G 4 HOH A 10 410 107 HOH HOH . G 4 HOH A 11 411 119 HOH HOH . G 4 HOH A 12 412 167 HOH HOH . G 4 HOH A 13 413 153 HOH HOH . G 4 HOH A 14 414 4 HOH HOH . G 4 HOH A 15 415 188 HOH HOH . G 4 HOH A 16 416 122 HOH HOH . G 4 HOH A 17 417 164 HOH HOH . G 4 HOH A 18 418 34 HOH HOH . G 4 HOH A 19 419 25 HOH HOH . G 4 HOH A 20 420 108 HOH HOH . G 4 HOH A 21 421 136 HOH HOH . G 4 HOH A 22 422 2 HOH HOH . G 4 HOH A 23 423 23 HOH HOH . G 4 HOH A 24 424 79 HOH HOH . G 4 HOH A 25 425 37 HOH HOH . G 4 HOH A 26 426 27 HOH HOH . G 4 HOH A 27 427 13 HOH HOH . G 4 HOH A 28 428 49 HOH HOH . G 4 HOH A 29 429 26 HOH HOH . G 4 HOH A 30 430 22 HOH HOH . G 4 HOH A 31 431 137 HOH HOH . G 4 HOH A 32 432 196 HOH HOH . G 4 HOH A 33 433 5 HOH HOH . G 4 HOH A 34 434 82 HOH HOH . G 4 HOH A 35 435 8 HOH HOH . G 4 HOH A 36 436 16 HOH HOH . G 4 HOH A 37 437 6 HOH HOH . G 4 HOH A 38 438 35 HOH HOH . G 4 HOH A 39 439 85 HOH HOH . G 4 HOH A 40 440 69 HOH HOH . G 4 HOH A 41 441 33 HOH HOH . G 4 HOH A 42 442 29 HOH HOH . G 4 HOH A 43 443 56 HOH HOH . G 4 HOH A 44 444 30 HOH HOH . G 4 HOH A 45 445 19 HOH HOH . G 4 HOH A 46 446 106 HOH HOH . G 4 HOH A 47 447 9 HOH HOH . G 4 HOH A 48 448 112 HOH HOH . G 4 HOH A 49 449 1 HOH HOH . G 4 HOH A 50 450 110 HOH HOH . G 4 HOH A 51 451 52 HOH HOH . G 4 HOH A 52 452 3 HOH HOH . G 4 HOH A 53 453 7 HOH HOH . G 4 HOH A 54 454 165 HOH HOH . G 4 HOH A 55 455 81 HOH HOH . G 4 HOH A 56 456 99 HOH HOH . G 4 HOH A 57 457 10 HOH HOH . G 4 HOH A 58 458 39 HOH HOH . G 4 HOH A 59 459 76 HOH HOH . G 4 HOH A 60 460 181 HOH HOH . G 4 HOH A 61 461 84 HOH HOH . G 4 HOH A 62 462 88 HOH HOH . G 4 HOH A 63 463 70 HOH HOH . G 4 HOH A 64 464 53 HOH HOH . G 4 HOH A 65 465 54 HOH HOH . G 4 HOH A 66 466 86 HOH HOH . G 4 HOH A 67 467 135 HOH HOH . G 4 HOH A 68 468 168 HOH HOH . G 4 HOH A 69 469 91 HOH HOH . G 4 HOH A 70 470 43 HOH HOH . G 4 HOH A 71 471 59 HOH HOH . G 4 HOH A 72 472 46 HOH HOH . G 4 HOH A 73 473 96 HOH HOH . G 4 HOH A 74 474 118 HOH HOH . G 4 HOH A 75 475 116 HOH HOH . G 4 HOH A 76 476 14 HOH HOH . G 4 HOH A 77 477 18 HOH HOH . G 4 HOH A 78 478 95 HOH HOH . G 4 HOH A 79 479 177 HOH HOH . G 4 HOH A 80 480 117 HOH HOH . G 4 HOH A 81 481 44 HOH HOH . G 4 HOH A 82 482 67 HOH HOH . G 4 HOH A 83 483 158 HOH HOH . G 4 HOH A 84 484 97 HOH HOH . G 4 HOH A 85 485 58 HOH HOH . G 4 HOH A 86 486 17 HOH HOH . G 4 HOH A 87 487 144 HOH HOH . G 4 HOH A 88 488 60 HOH HOH . G 4 HOH A 89 489 20 HOH HOH . G 4 HOH A 90 490 151 HOH HOH . G 4 HOH A 91 491 120 HOH HOH . G 4 HOH A 92 492 126 HOH HOH . G 4 HOH A 93 493 36 HOH HOH . G 4 HOH A 94 494 80 HOH HOH . G 4 HOH A 95 495 62 HOH HOH . G 4 HOH A 96 496 190 HOH HOH . G 4 HOH A 97 497 183 HOH HOH . G 4 HOH A 98 498 125 HOH HOH . G 4 HOH A 99 499 41 HOH HOH . G 4 HOH A 100 500 11 HOH HOH . G 4 HOH A 101 501 57 HOH HOH . G 4 HOH A 102 502 83 HOH HOH . G 4 HOH A 103 503 155 HOH HOH . G 4 HOH A 104 504 48 HOH HOH . G 4 HOH A 105 505 77 HOH HOH . G 4 HOH A 106 506 162 HOH HOH . G 4 HOH A 107 507 140 HOH HOH . G 4 HOH A 108 508 90 HOH HOH . G 4 HOH A 109 509 169 HOH HOH . G 4 HOH A 110 510 64 HOH HOH . G 4 HOH A 111 511 63 HOH HOH . G 4 HOH A 112 512 163 HOH HOH . G 4 HOH A 113 513 61 HOH HOH . G 4 HOH A 114 514 138 HOH HOH . G 4 HOH A 115 515 51 HOH HOH . G 4 HOH A 116 516 124 HOH HOH . G 4 HOH A 117 517 68 HOH HOH . G 4 HOH A 118 518 50 HOH HOH . G 4 HOH A 119 519 128 HOH HOH . G 4 HOH A 120 520 195 HOH HOH . G 4 HOH A 121 521 174 HOH HOH . G 4 HOH A 122 522 28 HOH HOH . G 4 HOH A 123 523 38 HOH HOH . G 4 HOH A 124 524 166 HOH HOH . G 4 HOH A 125 525 173 HOH HOH . G 4 HOH A 126 526 65 HOH HOH . G 4 HOH A 127 527 114 HOH HOH . G 4 HOH A 128 528 179 HOH HOH . G 4 HOH A 129 529 143 HOH HOH . G 4 HOH A 130 530 78 HOH HOH . G 4 HOH A 131 531 133 HOH HOH . G 4 HOH A 132 532 175 HOH HOH . G 4 HOH A 133 533 92 HOH HOH . G 4 HOH A 134 534 72 HOH HOH . G 4 HOH A 135 535 191 HOH HOH . G 4 HOH A 136 536 129 HOH HOH . G 4 HOH A 137 537 132 HOH HOH . G 4 HOH A 138 538 178 HOH HOH . G 4 HOH A 139 539 176 HOH HOH . G 4 HOH A 140 540 172 HOH HOH . G 4 HOH A 141 541 102 HOH HOH . G 4 HOH A 142 542 157 HOH HOH . G 4 HOH A 143 543 66 HOH HOH . G 4 HOH A 144 544 180 HOH HOH . G 4 HOH A 145 545 71 HOH HOH . G 4 HOH A 146 546 193 HOH HOH . G 4 HOH A 147 547 192 HOH HOH . G 4 HOH A 148 548 139 HOH HOH . G 4 HOH A 149 549 12 HOH HOH . G 4 HOH A 150 550 189 HOH HOH . G 4 HOH A 151 551 134 HOH HOH . G 4 HOH A 152 552 123 HOH HOH . G 4 HOH A 153 553 184 HOH HOH . G 4 HOH A 154 554 186 HOH HOH . G 4 HOH A 155 555 104 HOH HOH . G 4 HOH A 156 556 47 HOH HOH . G 4 HOH A 157 557 197 HOH HOH . G 4 HOH A 158 558 127 HOH HOH . G 4 HOH A 159 559 42 HOH HOH . G 4 HOH A 160 560 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 11.626 25.412 31.747 1 49.21 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 3 12.789 24.891 32.313 1 57.36 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 3 12.007 25.859 30.329 1 43.98 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 3 13.049 26.766 30.338 1 52.47 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 3 10.725 26.463 29.742 1 47.14 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 3 11.123 27.442 28.832 1 44.36 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #