data_6M7O # _model_server_result.job_id 30BC_rflg8w24jut8ZEpiA _model_server_result.datetime_utc '2024-10-19 17:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6M7O # _exptl.entry_id 6M7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M7O _cell.length_a 98.9 _cell.length_b 98.9 _cell.length_c 81.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DT 2 T DT 3 1_555 B P 02I 3 T 02I 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.608 ? covale ? covale2 B O3' DT 2 T DT 3 1_555 B P 02I 3 T 02I 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.62 ? covale ? covale3 B O3' 02I 3 T 02I 4 1_555 B P DC 4 T DC 5 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale4 B O3' 02I 3 T 02I 4 1_555 B P DC 4 T DC 5 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.601 ? metalc ? metalc1 A OD1 ASP 16 A ASP 13 1_555 D MN MN . A MN 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A OD2 ASP 16 A ASP 13 1_555 E MN MN . A MN 502 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 A O MET 17 A MET 14 1_555 D MN MN . A MN 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 A OD1 ASP 118 A ASP 115 1_555 D MN MN . A MN 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A OD2 ASP 118 A ASP 115 1_555 E MN MN . A MN 502 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 A OE2 GLU 119 A GLU 116 1_555 E MN MN . A MN 502 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 D MN MN . A MN 501 1_555 F O1A 1FZ . A 1FZ 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc8 D MN MN . A MN 501 1_555 F O2B 1FZ . A 1FZ 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 D MN MN . A MN 501 1_555 F O3G 1FZ . A 1FZ 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc10 E MN MN . A MN 502 1_555 F O1A 1FZ . A 1FZ 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 E MN MN . A MN 502 1_555 C O3' DG 8 P DG 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.946 ? hydrog WATSON-CRICK hydrog1 B N3 DC 4 T DC 5 1_555 C N1 DG 8 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 4 T DC 5 1_555 C O6 DG 8 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 4 T DC 5 1_555 C N2 DG 8 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 5 T DT 6 1_555 C N1 DA 7 P DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 5 T DT 6 1_555 C N6 DA 7 P DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 6 T DC 7 1_555 C N1 DG 6 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 6 T DC 7 1_555 C O6 DG 6 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 6 T DC 7 1_555 C N2 DG 6 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 7 T DA 8 1_555 C N3 DT 5 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 7 T DA 8 1_555 C O4 DT 5 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 8 T DC 9 1_555 C N1 DG 4 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 8 T DC 9 1_555 C O6 DG 4 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 8 T DC 9 1_555 C N2 DG 4 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DA 9 T DA 10 1_555 C N3 DT 3 P DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N6 DA 9 T DA 10 1_555 C O4 DT 3 P DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 10 T DC 11 1_555 C N1 DG 2 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 10 T DC 11 1_555 C O6 DG 2 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 10 T DC 11 1_555 C N2 DG 2 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 11 T DT 12 1_555 C N1 DA 1 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 11 T DT 12 1_555 C N6 DA 1 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M7O _atom_sites.fract_transf_matrix[1][1] 0.010111 _atom_sites.fract_transf_matrix[1][2] 0.005838 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 501 501 MN MN . E 4 MN A 1 502 502 MN MN . F 5 1FZ A 1 503 503 1FZ 1FZ . G 6 HOH A 1 601 31 HOH HOH . G 6 HOH A 2 602 9 HOH HOH . G 6 HOH A 3 603 6 HOH HOH . G 6 HOH A 4 604 29 HOH HOH . G 6 HOH A 5 605 11 HOH HOH . G 6 HOH A 6 606 8 HOH HOH . G 6 HOH A 7 607 3 HOH HOH . G 6 HOH A 8 608 5 HOH HOH . G 6 HOH A 9 609 2 HOH HOH . G 6 HOH A 10 610 25 HOH HOH . G 6 HOH A 11 611 33 HOH HOH . G 6 HOH A 12 612 24 HOH HOH . G 6 HOH A 13 613 21 HOH HOH . G 6 HOH A 14 614 32 HOH HOH . G 6 HOH A 15 615 12 HOH HOH . G 6 HOH A 16 616 26 HOH HOH . G 6 HOH A 17 617 36 HOH HOH . G 6 HOH A 18 618 1 HOH HOH . G 6 HOH A 19 619 18 HOH HOH . H 6 HOH P 1 101 4 HOH HOH . H 6 HOH P 2 102 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 55.107 _atom_site.Cartn_y 2.863 _atom_site.Cartn_z 3.244 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #