data_6M7V # _model_server_result.job_id k7bIhSuhKRVfZjtjYGhkZw _model_server_result.datetime_utc '2024-11-17 16:39:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":504}' # _entry.id 6M7V # _exptl.entry_id 6M7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M7V _cell.length_a 63.075 _cell.length_b 81.387 _cell.length_c 145.006 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' 02I 1 T 02I 4 1_555 C P DC 2 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? metalc ? metalc1 A OD1 ASP 16 A ASP 13 1_555 F MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 A OD2 ASP 16 A ASP 13 1_555 G MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc3 A O MET 17 A MET 14 1_555 F MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 A OD1 ASP 118 A ASP 115 1_555 F MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc5 A OD2 ASP 118 A ASP 115 1_555 G MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 A OE2 GLU 119 A GLU 116 1_555 G MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 A OD2 ASP 184 A ASP 181 1_555 D NI NI . A NI 501 2_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 A NE2 HIS 292 A HIS 289 1_555 D NI NI . A NI 501 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc9 A NE2 HIS 396 A HIS 393 1_555 D NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 A NE2 HIS 400 A HIS 397 1_555 D NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc11 E O1A DZ4 . A DZ4 502 1_555 F MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc12 E O1B DZ4 . A DZ4 502 1_555 F MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc13 E O1G DZ4 . A DZ4 502 1_555 F MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc14 E O1A DZ4 . A DZ4 502 1_555 G MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc15 G MN MN . A MN 504 1_555 H O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc16 G MN MN . A MN 504 1_555 B OP1 DT 8 P DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 P DG 2 1_555 C N3 DC 8 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 P DG 2 1_555 C O2 DC 8 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 P DG 2 1_555 C N4 DC 8 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 2 P DT 3 1_555 C N1 DA 7 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 2 P DT 3 1_555 C N6 DA 7 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 P DG 4 1_555 C N3 DC 6 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 P DG 4 1_555 C O2 DC 6 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 P DG 4 1_555 C N4 DC 6 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 4 P DT 5 1_555 C N1 DA 5 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 4 P DT 5 1_555 C N6 DA 5 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DG 5 P DG 6 1_555 C N3 DC 4 T DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N2 DG 5 P DG 6 1_555 C O2 DC 4 T DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O6 DG 5 P DG 6 1_555 C N4 DC 4 T DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DA 6 P DA 7 1_555 C N3 DT 3 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N6 DA 6 P DA 7 1_555 C O4 DT 3 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 7 P DG 8 1_555 C N3 DC 2 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 7 P DG 8 1_555 C O2 DC 2 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 7 P DG 8 1_555 C N4 DC 2 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M7V _atom_sites.fract_transf_matrix[1][1] 0.015854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI A 1 501 452 NI NI . E 5 DZ4 A 1 502 433 DZ4 DZ4 . F 6 MN A 1 503 1 MN MN . G 6 MN A 1 504 2 MN MN . H 7 HOH A 1 601 15 HOH HOH . H 7 HOH A 2 602 13 HOH HOH . H 7 HOH A 3 603 10 HOH HOH . H 7 HOH A 4 604 42 HOH HOH . H 7 HOH A 5 605 27 HOH HOH . H 7 HOH A 6 606 1 HOH HOH . H 7 HOH A 7 607 14 HOH HOH . H 7 HOH A 8 608 2 HOH HOH . H 7 HOH A 9 609 41 HOH HOH . H 7 HOH A 10 610 17 HOH HOH . H 7 HOH A 11 611 5 HOH HOH . H 7 HOH A 12 612 37 HOH HOH . I 7 HOH P 1 101 21 HOH HOH . I 7 HOH P 2 102 3 HOH HOH . I 7 HOH P 3 103 40 HOH HOH . J 7 HOH T 1 101 18 HOH HOH . J 7 HOH T 2 102 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 3.773 _atom_site.Cartn_y -2.215 _atom_site.Cartn_z 17.454 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 442 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #