data_6M82 # _model_server_result.job_id '_KZECPKn1L6lbU1G2FSgjw' _model_server_result.datetime_utc '2024-10-11 15:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6M82 # _exptl.entry_id 6M82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M82 _cell.length_a 64.556 _cell.length_b 91.574 _cell.length_c 93.386 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 13 A ASP 13 1_555 A N HOX 14 A HOX 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C HOX 14 A HOX 14 1_555 A N SER 15 A SER 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M82 _atom_sites.fract_transf_matrix[1][1] 0.01549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 TLO A 1 302 1 TLO TLO . D 4 EDO A 1 303 1 EDO EDO . E 5 HOH A 1 401 122 HOH HOH . E 5 HOH A 2 402 57 HOH HOH . E 5 HOH A 3 403 246 HOH HOH . E 5 HOH A 4 404 112 HOH HOH . E 5 HOH A 5 405 256 HOH HOH . E 5 HOH A 6 406 68 HOH HOH . E 5 HOH A 7 407 236 HOH HOH . E 5 HOH A 8 408 255 HOH HOH . E 5 HOH A 9 409 24 HOH HOH . E 5 HOH A 10 410 81 HOH HOH . E 5 HOH A 11 411 165 HOH HOH . E 5 HOH A 12 412 167 HOH HOH . E 5 HOH A 13 413 228 HOH HOH . E 5 HOH A 14 414 234 HOH HOH . E 5 HOH A 15 415 197 HOH HOH . E 5 HOH A 16 416 251 HOH HOH . E 5 HOH A 17 417 158 HOH HOH . E 5 HOH A 18 418 101 HOH HOH . E 5 HOH A 19 419 240 HOH HOH . E 5 HOH A 20 420 134 HOH HOH . E 5 HOH A 21 421 11 HOH HOH . E 5 HOH A 22 422 168 HOH HOH . E 5 HOH A 23 423 170 HOH HOH . E 5 HOH A 24 424 162 HOH HOH . E 5 HOH A 25 425 56 HOH HOH . E 5 HOH A 26 426 13 HOH HOH . E 5 HOH A 27 427 20 HOH HOH . E 5 HOH A 28 428 15 HOH HOH . E 5 HOH A 29 429 173 HOH HOH . E 5 HOH A 30 430 211 HOH HOH . E 5 HOH A 31 431 19 HOH HOH . E 5 HOH A 32 432 29 HOH HOH . E 5 HOH A 33 433 78 HOH HOH . E 5 HOH A 34 434 41 HOH HOH . E 5 HOH A 35 435 215 HOH HOH . E 5 HOH A 36 436 48 HOH HOH . E 5 HOH A 37 437 58 HOH HOH . E 5 HOH A 38 438 80 HOH HOH . E 5 HOH A 39 439 10 HOH HOH . E 5 HOH A 40 440 203 HOH HOH . E 5 HOH A 41 441 213 HOH HOH . E 5 HOH A 42 442 150 HOH HOH . E 5 HOH A 43 443 106 HOH HOH . E 5 HOH A 44 444 12 HOH HOH . E 5 HOH A 45 445 2 HOH HOH . E 5 HOH A 46 446 218 HOH HOH . E 5 HOH A 47 447 63 HOH HOH . E 5 HOH A 48 448 229 HOH HOH . E 5 HOH A 49 449 3 HOH HOH . E 5 HOH A 50 450 103 HOH HOH . E 5 HOH A 51 451 9 HOH HOH . E 5 HOH A 52 452 96 HOH HOH . E 5 HOH A 53 453 111 HOH HOH . E 5 HOH A 54 454 5 HOH HOH . E 5 HOH A 55 455 74 HOH HOH . E 5 HOH A 56 456 100 HOH HOH . E 5 HOH A 57 457 16 HOH HOH . E 5 HOH A 58 458 66 HOH HOH . E 5 HOH A 59 459 67 HOH HOH . E 5 HOH A 60 460 59 HOH HOH . E 5 HOH A 61 461 70 HOH HOH . E 5 HOH A 62 462 4 HOH HOH . E 5 HOH A 63 463 108 HOH HOH . E 5 HOH A 64 464 40 HOH HOH . E 5 HOH A 65 465 8 HOH HOH . E 5 HOH A 66 466 77 HOH HOH . E 5 HOH A 67 467 22 HOH HOH . E 5 HOH A 68 468 6 HOH HOH . E 5 HOH A 69 469 14 HOH HOH . E 5 HOH A 70 470 83 HOH HOH . E 5 HOH A 71 471 107 HOH HOH . E 5 HOH A 72 472 42 HOH HOH . E 5 HOH A 73 473 125 HOH HOH . E 5 HOH A 74 474 180 HOH HOH . E 5 HOH A 75 475 21 HOH HOH . E 5 HOH A 76 476 33 HOH HOH . E 5 HOH A 77 477 179 HOH HOH . E 5 HOH A 78 478 140 HOH HOH . E 5 HOH A 79 479 18 HOH HOH . E 5 HOH A 80 480 26 HOH HOH . E 5 HOH A 81 481 69 HOH HOH . E 5 HOH A 82 482 39 HOH HOH . E 5 HOH A 83 483 166 HOH HOH . E 5 HOH A 84 484 46 HOH HOH . E 5 HOH A 85 485 54 HOH HOH . E 5 HOH A 86 486 187 HOH HOH . E 5 HOH A 87 487 32 HOH HOH . E 5 HOH A 88 488 142 HOH HOH . E 5 HOH A 89 489 181 HOH HOH . E 5 HOH A 90 490 238 HOH HOH . E 5 HOH A 91 491 115 HOH HOH . E 5 HOH A 92 492 91 HOH HOH . E 5 HOH A 93 493 176 HOH HOH . E 5 HOH A 94 494 198 HOH HOH . E 5 HOH A 95 495 45 HOH HOH . E 5 HOH A 96 496 27 HOH HOH . E 5 HOH A 97 497 97 HOH HOH . E 5 HOH A 98 498 62 HOH HOH . E 5 HOH A 99 499 131 HOH HOH . E 5 HOH A 100 500 208 HOH HOH . E 5 HOH A 101 501 34 HOH HOH . E 5 HOH A 102 502 223 HOH HOH . E 5 HOH A 103 503 23 HOH HOH . E 5 HOH A 104 504 204 HOH HOH . E 5 HOH A 105 505 84 HOH HOH . E 5 HOH A 106 506 139 HOH HOH . E 5 HOH A 107 507 127 HOH HOH . E 5 HOH A 108 508 160 HOH HOH . E 5 HOH A 109 509 206 HOH HOH . E 5 HOH A 110 510 161 HOH HOH . E 5 HOH A 111 511 43 HOH HOH . E 5 HOH A 112 512 82 HOH HOH . E 5 HOH A 113 513 72 HOH HOH . E 5 HOH A 114 514 144 HOH HOH . E 5 HOH A 115 515 154 HOH HOH . E 5 HOH A 116 516 37 HOH HOH . E 5 HOH A 117 517 28 HOH HOH . E 5 HOH A 118 518 222 HOH HOH . E 5 HOH A 119 519 75 HOH HOH . E 5 HOH A 120 520 233 HOH HOH . E 5 HOH A 121 521 169 HOH HOH . E 5 HOH A 122 522 250 HOH HOH . E 5 HOH A 123 523 30 HOH HOH . E 5 HOH A 124 524 71 HOH HOH . E 5 HOH A 125 525 52 HOH HOH . E 5 HOH A 126 526 116 HOH HOH . E 5 HOH A 127 527 159 HOH HOH . E 5 HOH A 128 528 86 HOH HOH . E 5 HOH A 129 529 95 HOH HOH . E 5 HOH A 130 530 61 HOH HOH . E 5 HOH A 131 531 146 HOH HOH . E 5 HOH A 132 532 73 HOH HOH . E 5 HOH A 133 533 217 HOH HOH . E 5 HOH A 134 534 232 HOH HOH . E 5 HOH A 135 535 117 HOH HOH . E 5 HOH A 136 536 88 HOH HOH . E 5 HOH A 137 537 104 HOH HOH . E 5 HOH A 138 538 118 HOH HOH . E 5 HOH A 139 539 17 HOH HOH . E 5 HOH A 140 540 207 HOH HOH . E 5 HOH A 141 541 99 HOH HOH . E 5 HOH A 142 542 235 HOH HOH . E 5 HOH A 143 543 87 HOH HOH . E 5 HOH A 144 544 185 HOH HOH . E 5 HOH A 145 545 113 HOH HOH . E 5 HOH A 146 546 201 HOH HOH . E 5 HOH A 147 547 138 HOH HOH . E 5 HOH A 148 548 123 HOH HOH . E 5 HOH A 149 549 155 HOH HOH . E 5 HOH A 150 550 53 HOH HOH . E 5 HOH A 151 551 60 HOH HOH . E 5 HOH A 152 552 237 HOH HOH . E 5 HOH A 153 553 47 HOH HOH . E 5 HOH A 154 554 257 HOH HOH . E 5 HOH A 155 555 220 HOH HOH . E 5 HOH A 156 556 102 HOH HOH . E 5 HOH A 157 557 7 HOH HOH . E 5 HOH A 158 558 163 HOH HOH . E 5 HOH A 159 559 76 HOH HOH . E 5 HOH A 160 560 145 HOH HOH . E 5 HOH A 161 561 183 HOH HOH . E 5 HOH A 162 562 219 HOH HOH . E 5 HOH A 163 563 31 HOH HOH . E 5 HOH A 164 564 38 HOH HOH . E 5 HOH A 165 565 120 HOH HOH . E 5 HOH A 166 566 141 HOH HOH . E 5 HOH A 167 567 121 HOH HOH . E 5 HOH A 168 568 153 HOH HOH . E 5 HOH A 169 569 171 HOH HOH . E 5 HOH A 170 570 90 HOH HOH . E 5 HOH A 171 571 136 HOH HOH . E 5 HOH A 172 572 110 HOH HOH . E 5 HOH A 173 573 35 HOH HOH . E 5 HOH A 174 574 94 HOH HOH . E 5 HOH A 175 575 189 HOH HOH . E 5 HOH A 176 576 253 HOH HOH . E 5 HOH A 177 577 149 HOH HOH . E 5 HOH A 178 578 133 HOH HOH . E 5 HOH A 179 579 1 HOH HOH . E 5 HOH A 180 580 143 HOH HOH . E 5 HOH A 181 581 172 HOH HOH . E 5 HOH A 182 582 231 HOH HOH . E 5 HOH A 183 583 65 HOH HOH . E 5 HOH A 184 584 135 HOH HOH . E 5 HOH A 185 585 55 HOH HOH . E 5 HOH A 186 586 119 HOH HOH . E 5 HOH A 187 587 186 HOH HOH . E 5 HOH A 188 588 148 HOH HOH . E 5 HOH A 189 589 241 HOH HOH . E 5 HOH A 190 590 200 HOH HOH . E 5 HOH A 191 591 114 HOH HOH . E 5 HOH A 192 592 191 HOH HOH . E 5 HOH A 193 593 151 HOH HOH . E 5 HOH A 194 594 49 HOH HOH . E 5 HOH A 195 595 44 HOH HOH . E 5 HOH A 196 596 199 HOH HOH . E 5 HOH A 197 597 177 HOH HOH . E 5 HOH A 198 598 92 HOH HOH . E 5 HOH A 199 599 132 HOH HOH . E 5 HOH A 200 600 214 HOH HOH . E 5 HOH A 201 601 230 HOH HOH . E 5 HOH A 202 602 98 HOH HOH . E 5 HOH A 203 603 156 HOH HOH . E 5 HOH A 204 604 79 HOH HOH . E 5 HOH A 205 605 196 HOH HOH . E 5 HOH A 206 606 247 HOH HOH . E 5 HOH A 207 607 194 HOH HOH . E 5 HOH A 208 608 221 HOH HOH . E 5 HOH A 209 609 129 HOH HOH . E 5 HOH A 210 610 174 HOH HOH . E 5 HOH A 211 611 157 HOH HOH . E 5 HOH A 212 612 182 HOH HOH . E 5 HOH A 213 613 124 HOH HOH . E 5 HOH A 214 614 245 HOH HOH . E 5 HOH A 215 615 249 HOH HOH . E 5 HOH A 216 616 258 HOH HOH . E 5 HOH A 217 617 225 HOH HOH . E 5 HOH A 218 618 147 HOH HOH . E 5 HOH A 219 619 188 HOH HOH . E 5 HOH A 220 620 184 HOH HOH . E 5 HOH A 221 621 50 HOH HOH . E 5 HOH A 222 622 254 HOH HOH . E 5 HOH A 223 623 216 HOH HOH . E 5 HOH A 224 624 89 HOH HOH . E 5 HOH A 225 625 178 HOH HOH . E 5 HOH A 226 626 152 HOH HOH . E 5 HOH A 227 627 210 HOH HOH . E 5 HOH A 228 628 209 HOH HOH . E 5 HOH A 229 629 93 HOH HOH . E 5 HOH A 230 630 64 HOH HOH . E 5 HOH A 231 631 192 HOH HOH . E 5 HOH A 232 632 164 HOH HOH . E 5 HOH A 233 633 195 HOH HOH . E 5 HOH A 234 634 105 HOH HOH . E 5 HOH A 235 635 85 HOH HOH . E 5 HOH A 236 636 36 HOH HOH . E 5 HOH A 237 637 193 HOH HOH . E 5 HOH A 238 638 239 HOH HOH . E 5 HOH A 239 639 224 HOH HOH . E 5 HOH A 240 640 190 HOH HOH . E 5 HOH A 241 641 242 HOH HOH . E 5 HOH A 242 642 130 HOH HOH . E 5 HOH A 243 643 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -17.492 -18.339 -16.821 1 14.84 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -17.676 -16.886 -16.591 1 14.88 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -18.961 -16.536 -15.855 1 16.43 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -19.106 -17.134 -14.469 1 16.73 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -20.524 -16.362 -13.56 1 16.3 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -16.447 -16.297 -15.91 1 15.98 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -15.489 -17.064 -15.665 1 16.26 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -16.453 -15.066 -15.642 1 16.29 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -21.751 -17.658 -13.779 1 15.79 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 -22.404 -17.697 -15.159 1 15.7 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 -23.217 -18.884 -15.244 1 14.87 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 -23.362 -16.511 -15.434 1 15.42 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 -22.964 -15.86 -16.651 1 16.2 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 -24.717 -17.205 -15.505 1 15.09 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 -25.651 -16.505 -16.296 1 16.53 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 -24.311 -18.536 -16.086 1 14.55 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 -25.326 -19.57 -15.905 1 15.06 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 -25.979 -19.926 -14.738 1 16.44 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 -26.797 -20.972 -14.981 1 16.7 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 -26.679 -21.3 -16.304 1 15 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 -27.218 -22.309 -17.084 1 15.48 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 -28.141 -23.193 -16.667 1 16.73 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 -26.835 -22.333 -18.391 1 15.65 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 -25.921 -21.446 -18.935 1 15.3 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 -25.364 -20.47 -18.169 1 14.93 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 -25.739 -20.435 -16.877 1 14.55 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #