data_6M83 # _model_server_result.job_id m3TYSc-8AUhrdvKMUgC5Ew _model_server_result.datetime_utc '2024-11-29 02:02:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6M83 # _exptl.entry_id 6M83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M83 _cell.length_a 64.521 _cell.length_b 91.267 _cell.length_c 93.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6M83 _atom_sites.fract_transf_matrix[1][1] 0.015499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 TLO A 1 302 1 TLO TLO . D 4 CL A 1 303 1 CL CL . E 5 HOH A 1 401 201 HOH HOH . E 5 HOH A 2 402 72 HOH HOH . E 5 HOH A 3 403 187 HOH HOH . E 5 HOH A 4 404 141 HOH HOH . E 5 HOH A 5 405 202 HOH HOH . E 5 HOH A 6 406 215 HOH HOH . E 5 HOH A 7 407 189 HOH HOH . E 5 HOH A 8 408 99 HOH HOH . E 5 HOH A 9 409 61 HOH HOH . E 5 HOH A 10 410 168 HOH HOH . E 5 HOH A 11 411 29 HOH HOH . E 5 HOH A 12 412 64 HOH HOH . E 5 HOH A 13 413 48 HOH HOH . E 5 HOH A 14 414 26 HOH HOH . E 5 HOH A 15 415 216 HOH HOH . E 5 HOH A 16 416 50 HOH HOH . E 5 HOH A 17 417 97 HOH HOH . E 5 HOH A 18 418 192 HOH HOH . E 5 HOH A 19 419 111 HOH HOH . E 5 HOH A 20 420 193 HOH HOH . E 5 HOH A 21 421 8 HOH HOH . E 5 HOH A 22 422 167 HOH HOH . E 5 HOH A 23 423 10 HOH HOH . E 5 HOH A 24 424 53 HOH HOH . E 5 HOH A 25 425 103 HOH HOH . E 5 HOH A 26 426 12 HOH HOH . E 5 HOH A 27 427 84 HOH HOH . E 5 HOH A 28 428 133 HOH HOH . E 5 HOH A 29 429 28 HOH HOH . E 5 HOH A 30 430 101 HOH HOH . E 5 HOH A 31 431 183 HOH HOH . E 5 HOH A 32 432 9 HOH HOH . E 5 HOH A 33 433 142 HOH HOH . E 5 HOH A 34 434 47 HOH HOH . E 5 HOH A 35 435 137 HOH HOH . E 5 HOH A 36 436 56 HOH HOH . E 5 HOH A 37 437 18 HOH HOH . E 5 HOH A 38 438 16 HOH HOH . E 5 HOH A 39 439 59 HOH HOH . E 5 HOH A 40 440 65 HOH HOH . E 5 HOH A 41 441 13 HOH HOH . E 5 HOH A 42 442 6 HOH HOH . E 5 HOH A 43 443 130 HOH HOH . E 5 HOH A 44 444 19 HOH HOH . E 5 HOH A 45 445 98 HOH HOH . E 5 HOH A 46 446 163 HOH HOH . E 5 HOH A 47 447 46 HOH HOH . E 5 HOH A 48 448 119 HOH HOH . E 5 HOH A 49 449 158 HOH HOH . E 5 HOH A 50 450 15 HOH HOH . E 5 HOH A 51 451 148 HOH HOH . E 5 HOH A 52 452 40 HOH HOH . E 5 HOH A 53 453 139 HOH HOH . E 5 HOH A 54 454 2 HOH HOH . E 5 HOH A 55 455 14 HOH HOH . E 5 HOH A 56 456 52 HOH HOH . E 5 HOH A 57 457 20 HOH HOH . E 5 HOH A 58 458 4 HOH HOH . E 5 HOH A 59 459 113 HOH HOH . E 5 HOH A 60 460 33 HOH HOH . E 5 HOH A 61 461 45 HOH HOH . E 5 HOH A 62 462 200 HOH HOH . E 5 HOH A 63 463 24 HOH HOH . E 5 HOH A 64 464 54 HOH HOH . E 5 HOH A 65 465 66 HOH HOH . E 5 HOH A 66 466 3 HOH HOH . E 5 HOH A 67 467 76 HOH HOH . E 5 HOH A 68 468 198 HOH HOH . E 5 HOH A 69 469 1 HOH HOH . E 5 HOH A 70 470 67 HOH HOH . E 5 HOH A 71 471 42 HOH HOH . E 5 HOH A 72 472 86 HOH HOH . E 5 HOH A 73 473 35 HOH HOH . E 5 HOH A 74 474 68 HOH HOH . E 5 HOH A 75 475 100 HOH HOH . E 5 HOH A 76 476 44 HOH HOH . E 5 HOH A 77 477 194 HOH HOH . E 5 HOH A 78 478 147 HOH HOH . E 5 HOH A 79 479 184 HOH HOH . E 5 HOH A 80 480 51 HOH HOH . E 5 HOH A 81 481 206 HOH HOH . E 5 HOH A 82 482 7 HOH HOH . E 5 HOH A 83 483 23 HOH HOH . E 5 HOH A 84 484 22 HOH HOH . E 5 HOH A 85 485 69 HOH HOH . E 5 HOH A 86 486 31 HOH HOH . E 5 HOH A 87 487 17 HOH HOH . E 5 HOH A 88 488 89 HOH HOH . E 5 HOH A 89 489 105 HOH HOH . E 5 HOH A 90 490 155 HOH HOH . E 5 HOH A 91 491 49 HOH HOH . E 5 HOH A 92 492 220 HOH HOH . E 5 HOH A 93 493 37 HOH HOH . E 5 HOH A 94 494 117 HOH HOH . E 5 HOH A 95 495 178 HOH HOH . E 5 HOH A 96 496 104 HOH HOH . E 5 HOH A 97 497 136 HOH HOH . E 5 HOH A 98 498 58 HOH HOH . E 5 HOH A 99 499 153 HOH HOH . E 5 HOH A 100 500 134 HOH HOH . E 5 HOH A 101 501 70 HOH HOH . E 5 HOH A 102 502 11 HOH HOH . E 5 HOH A 103 503 209 HOH HOH . E 5 HOH A 104 504 27 HOH HOH . E 5 HOH A 105 505 138 HOH HOH . E 5 HOH A 106 506 71 HOH HOH . E 5 HOH A 107 507 73 HOH HOH . E 5 HOH A 108 508 125 HOH HOH . E 5 HOH A 109 509 170 HOH HOH . E 5 HOH A 110 510 32 HOH HOH . E 5 HOH A 111 511 205 HOH HOH . E 5 HOH A 112 512 171 HOH HOH . E 5 HOH A 113 513 74 HOH HOH . E 5 HOH A 114 514 127 HOH HOH . E 5 HOH A 115 515 166 HOH HOH . E 5 HOH A 116 516 218 HOH HOH . E 5 HOH A 117 517 108 HOH HOH . E 5 HOH A 118 518 157 HOH HOH . E 5 HOH A 119 519 112 HOH HOH . E 5 HOH A 120 520 91 HOH HOH . E 5 HOH A 121 521 174 HOH HOH . E 5 HOH A 122 522 95 HOH HOH . E 5 HOH A 123 523 195 HOH HOH . E 5 HOH A 124 524 21 HOH HOH . E 5 HOH A 125 525 88 HOH HOH . E 5 HOH A 126 526 63 HOH HOH . E 5 HOH A 127 527 173 HOH HOH . E 5 HOH A 128 528 132 HOH HOH . E 5 HOH A 129 529 79 HOH HOH . E 5 HOH A 130 530 60 HOH HOH . E 5 HOH A 131 531 145 HOH HOH . E 5 HOH A 132 532 160 HOH HOH . E 5 HOH A 133 533 172 HOH HOH . E 5 HOH A 134 534 181 HOH HOH . E 5 HOH A 135 535 213 HOH HOH . E 5 HOH A 136 536 165 HOH HOH . E 5 HOH A 137 537 83 HOH HOH . E 5 HOH A 138 538 55 HOH HOH . E 5 HOH A 139 539 38 HOH HOH . E 5 HOH A 140 540 149 HOH HOH . E 5 HOH A 141 541 164 HOH HOH . E 5 HOH A 142 542 78 HOH HOH . E 5 HOH A 143 543 135 HOH HOH . E 5 HOH A 144 544 121 HOH HOH . E 5 HOH A 145 545 204 HOH HOH . E 5 HOH A 146 546 77 HOH HOH . E 5 HOH A 147 547 131 HOH HOH . E 5 HOH A 148 548 102 HOH HOH . E 5 HOH A 149 549 36 HOH HOH . E 5 HOH A 150 550 57 HOH HOH . E 5 HOH A 151 551 199 HOH HOH . E 5 HOH A 152 552 196 HOH HOH . E 5 HOH A 153 553 190 HOH HOH . E 5 HOH A 154 554 5 HOH HOH . E 5 HOH A 155 555 25 HOH HOH . E 5 HOH A 156 556 92 HOH HOH . E 5 HOH A 157 557 109 HOH HOH . E 5 HOH A 158 558 129 HOH HOH . E 5 HOH A 159 559 87 HOH HOH . E 5 HOH A 160 560 93 HOH HOH . E 5 HOH A 161 561 162 HOH HOH . E 5 HOH A 162 562 210 HOH HOH . E 5 HOH A 163 563 81 HOH HOH . E 5 HOH A 164 564 203 HOH HOH . E 5 HOH A 165 565 39 HOH HOH . E 5 HOH A 166 566 106 HOH HOH . E 5 HOH A 167 567 185 HOH HOH . E 5 HOH A 168 568 151 HOH HOH . E 5 HOH A 169 569 62 HOH HOH . E 5 HOH A 170 570 156 HOH HOH . E 5 HOH A 171 571 96 HOH HOH . E 5 HOH A 172 572 126 HOH HOH . E 5 HOH A 173 573 152 HOH HOH . E 5 HOH A 174 574 208 HOH HOH . E 5 HOH A 175 575 114 HOH HOH . E 5 HOH A 176 576 115 HOH HOH . E 5 HOH A 177 577 122 HOH HOH . E 5 HOH A 178 578 159 HOH HOH . E 5 HOH A 179 579 154 HOH HOH . E 5 HOH A 180 580 144 HOH HOH . E 5 HOH A 181 581 118 HOH HOH . E 5 HOH A 182 582 41 HOH HOH . E 5 HOH A 183 583 140 HOH HOH . E 5 HOH A 184 584 179 HOH HOH . E 5 HOH A 185 585 94 HOH HOH . E 5 HOH A 186 586 146 HOH HOH . E 5 HOH A 187 587 217 HOH HOH . E 5 HOH A 188 588 90 HOH HOH . E 5 HOH A 189 589 107 HOH HOH . E 5 HOH A 190 590 123 HOH HOH . E 5 HOH A 191 591 186 HOH HOH . E 5 HOH A 192 592 197 HOH HOH . E 5 HOH A 193 593 110 HOH HOH . E 5 HOH A 194 594 34 HOH HOH . E 5 HOH A 195 595 219 HOH HOH . E 5 HOH A 196 596 124 HOH HOH . E 5 HOH A 197 597 116 HOH HOH . E 5 HOH A 198 598 207 HOH HOH . E 5 HOH A 199 599 150 HOH HOH . E 5 HOH A 200 600 82 HOH HOH . E 5 HOH A 201 601 214 HOH HOH . E 5 HOH A 202 602 175 HOH HOH . E 5 HOH A 203 603 222 HOH HOH . E 5 HOH A 204 604 120 HOH HOH . E 5 HOH A 205 605 188 HOH HOH . E 5 HOH A 206 606 43 HOH HOH . E 5 HOH A 207 607 80 HOH HOH . E 5 HOH A 208 608 143 HOH HOH . E 5 HOH A 209 609 221 HOH HOH . E 5 HOH A 210 610 224 HOH HOH . E 5 HOH A 211 611 75 HOH HOH . E 5 HOH A 212 612 30 HOH HOH . E 5 HOH A 213 613 191 HOH HOH . E 5 HOH A 214 614 212 HOH HOH . E 5 HOH A 215 615 169 HOH HOH . E 5 HOH A 216 616 182 HOH HOH . E 5 HOH A 217 617 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -17.496 -18.181 -16.954 1 14.06 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -17.683 -16.734 -16.72 1 14.74 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -18.966 -16.402 -15.983 1 16.29 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -19.129 -16.984 -14.603 1 16.84 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -20.542 -16.218 -13.687 1 15.78 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -16.47 -16.126 -16.039 1 15.24 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -15.513 -16.854 -15.798 1 16.01 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -16.455 -14.91 -15.757 1 15.84 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -21.757 -17.519 -13.896 1 14.55 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 -22.424 -17.559 -15.28 1 13.37 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 -23.235 -18.747 -15.379 1 12.69 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 -23.389 -16.393 -15.536 1 13.4 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 -23.005 -15.709 -16.727 1 14.35 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 -24.733 -17.069 -15.653 1 13.59 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 -25.676 -16.388 -16.439 1 15.5 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 -24.331 -18.414 -16.204 1 12.37 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 -25.314 -19.473 -16.014 1 13.62 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 -25.971 -19.837 -14.85 1 14.15 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 -26.772 -20.895 -15.1 1 13.91 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 -26.644 -21.211 -16.428 1 12.29 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 -27.199 -22.214 -17.213 1 12.6 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 -28.09 -23.096 -16.755 1 14.31 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 -26.796 -22.262 -18.516 1 11.97 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 -25.902 -21.352 -19.041 1 12.35 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 -25.336 -20.364 -18.284 1 12.52 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 -25.71 -20.337 -16.992 1 12.6 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #