data_6M84 # _model_server_result.job_id KrlSXzFhkCk98CRHAiuruw _model_server_result.datetime_utc '2024-11-15 00:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 6M84 # _exptl.entry_id 6M84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M84 _cell.length_a 82.787 _cell.length_b 82.787 _cell.length_c 182.976 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 A CYS 123 1_555 A SG CYS 120 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A O THR 108 A THR 143 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc2 A O THR 108 A THR 143 1_555 E K K . A K 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc3 A O THR 108 A THR 143 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc4 A OG1 THR 108 A THR 143 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc5 A O THR 108 A THR 143 1_555 F K K . A K 405 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc6 A OG1 THR 108 A THR 143 1_555 F K K . A K 405 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc7 A O ILE 109 A ILE 144 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc8 A O ILE 109 A ILE 144 1_555 D K K . A K 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc9 A O ILE 109 A ILE 144 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc10 A O ILE 109 A ILE 144 1_555 E K K . A K 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc11 A O GLY 110 A GLY 145 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.208 ? metalc ? metalc12 A O GLY 110 A GLY 145 1_555 C K K . A K 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.208 ? metalc ? metalc13 A O GLY 110 A GLY 145 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc14 A O GLY 110 A GLY 145 1_555 D K K . A K 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc15 A O TYR 111 A TYR 146 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.391 ? metalc ? metalc16 A O TYR 111 A TYR 146 1_555 B K K . A K 401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.391 ? metalc ? metalc17 A O TYR 111 A TYR 146 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc18 A O TYR 111 A TYR 146 1_555 C K K . A K 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 6M84 _atom_sites.fract_transf_matrix[1][1] 0.012079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 401 370 K K . C 2 K A 1 402 371 K K . D 2 K A 1 403 372 K K . E 2 K A 1 404 373 K K . F 2 K A 1 405 374 K K . G 2 K A 1 406 375 K K . H 3 PIO A 1 407 400 PIO PIO . I 4 LMT A 1 408 601 LMT LMT . J 5 HOH A 1 501 717 HOH HOH . J 5 HOH A 2 502 718 HOH HOH . J 5 HOH A 3 503 713 HOH HOH . J 5 HOH A 4 504 701 HOH HOH . J 5 HOH A 5 505 714 HOH HOH . J 5 HOH A 6 506 702 HOH HOH . J 5 HOH A 7 507 708 HOH HOH . J 5 HOH A 8 508 705 HOH HOH . J 5 HOH A 9 509 703 HOH HOH . J 5 HOH A 10 510 710 HOH HOH . J 5 HOH A 11 511 704 HOH HOH . J 5 HOH A 12 512 709 HOH HOH . J 5 HOH A 13 513 719 HOH HOH . J 5 HOH A 14 514 712 HOH HOH . J 5 HOH A 15 515 716 HOH HOH . J 5 HOH A 16 516 706 HOH HOH . J 5 HOH A 17 517 711 HOH HOH . J 5 HOH A 18 518 707 HOH HOH . J 5 HOH A 19 519 715 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . I 4 -3.573 28.662 0.863 1 170.36 ? C1B LMT 408 A 1 HETATM 2 C C2B LMT . . . I 4 -3.108 30.048 0.419 1 169.81 ? C2B LMT 408 A 1 HETATM 3 C C3B LMT . . . I 4 -4.184 31.106 0.643 1 168.27 ? C3B LMT 408 A 1 HETATM 4 C C4B LMT . . . I 4 -5.526 30.664 0.074 1 168.7 ? C4B LMT 408 A 1 HETATM 5 C C5B LMT . . . I 4 -5.878 29.246 0.519 1 170.06 ? C5B LMT 408 A 1 HETATM 6 C C6B LMT . . . I 4 -7.119 28.715 -0.184 1 170.53 ? C6B LMT 408 A 1 HETATM 7 O O1B LMT . . . I 4 -3.744 28.618 2.285 1 171.63 ? O1B LMT 408 A 1 HETATM 8 O O2B LMT . . . I 4 -1.922 30.406 1.136 1 167.32 ? O2B LMT 408 A 1 HETATM 9 O O3B LMT . . . I 4 -3.789 32.33 0.014 1 167.3 ? O3B LMT 408 A 1 HETATM 10 O O4' LMT . . . I 4 -6.536 31.582 0.51 1 165.2 ? O4' LMT 408 A 1 HETATM 11 O O5B LMT . . . I 4 -4.809 28.343 0.223 1 170.99 ? O5B LMT 408 A 1 HETATM 12 O O6B LMT . . . I 4 -8.213 29.628 -0.043 1 171.37 ? O6B LMT 408 A 1 HETATM 13 C C1' LMT . . . I 4 -2.955 25.824 5.303 1 173.14 ? C1' LMT 408 A 1 HETATM 14 C C2' LMT . . . I 4 -1.768 26.624 4.768 1 172.45 ? C2' LMT 408 A 1 HETATM 15 C C3' LMT . . . I 4 -2.233 27.839 3.976 1 171.93 ? C3' LMT 408 A 1 HETATM 16 C C4' LMT . . . I 4 -3.256 27.433 2.924 1 173.06 ? C4' LMT 408 A 1 HETATM 17 C C5' LMT . . . I 4 -4.392 26.646 3.583 1 172.66 ? C5' LMT 408 A 1 HETATM 18 C C6' LMT . . . I 4 -5.452 26.171 2.593 1 171.19 ? C6' LMT 408 A 1 HETATM 19 O O1' LMT . . . I 4 -2.49 24.601 5.876 1 176.43 ? O1' LMT 408 A 1 HETATM 20 O O2' LMT . . . I 4 -0.937 27.061 5.85 1 174.48 ? O2' LMT 408 A 1 HETATM 21 O O3' LMT . . . I 4 -1.11 28.462 3.343 1 173.45 ? O3' LMT 408 A 1 HETATM 22 O O5' LMT . . . I 4 -3.858 25.499 4.246 1 170.76 ? O5' LMT 408 A 1 HETATM 23 O O6' LMT . . . I 4 -4.857 25.447 1.508 1 168.03 ? O6' LMT 408 A 1 HETATM 24 C C1 LMT . . . I 4 -2.389 24.597 7.303 1 174.99 ? C1 LMT 408 A 1 HETATM 25 C C2 LMT . . . I 4 -3.662 24.005 7.901 1 170.59 ? C2 LMT 408 A 1 HETATM 26 C C3 LMT . . . I 4 -3.498 23.668 9.38 1 166.49 ? C3 LMT 408 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #