data_6M87 # _model_server_result.job_id K9aSW6zXLx0QsmFnmg8b8Q _model_server_result.datetime_utc '2024-11-05 00:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":302}' # _entry.id 6M87 # _exptl.entry_id 6M87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M87 _cell.length_a 186.485 _cell.length_b 186.485 _cell.length_c 89.909 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,N,Y,Z 1 1 C,H,T,U,AA,FA 2 1 D,I,O,V,BA,GA 3 1 E,J,P,Q,CA,HA 4 1 F,K,R,W,DA,IA 5 1 G,L,S,X,EA,JA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 Q N N ? 4 R N N ? 4 U N N ? 4 V N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 87 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 133 A CYS 134 1_555 A SG CYS 193 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 146 B CYS 139 1_555 B SG CYS 201 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 87 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 133 C CYS 134 1_555 C SG CYS 193 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 D SG CYS 23 E CYS 23 1_555 D SG CYS 87 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 133 E CYS 134 1_555 D SG CYS 193 E CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 23 G CYS 23 1_555 E SG CYS 87 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 133 G CYS 134 1_555 E SG CYS 193 G CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 23 I CYS 23 1_555 F SG CYS 87 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 133 I CYS 134 1_555 F SG CYS 193 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 G SG CYS 23 K CYS 23 1_555 G SG CYS 87 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 G SG CYS 133 K CYS 134 1_555 G SG CYS 193 K CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 H SG CYS 22 D CYS 22 1_555 H SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 H SG CYS 146 D CYS 139 1_555 H SG CYS 201 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 I SG CYS 22 F CYS 22 1_555 I SG CYS 96 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 I SG CYS 146 F CYS 139 1_555 I SG CYS 201 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 J SG CYS 22 H CYS 22 1_555 J SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 J SG CYS 146 H CYS 139 1_555 J SG CYS 201 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 K SG CYS 22 J CYS 22 1_555 K SG CYS 96 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 K SG CYS 146 J CYS 139 1_555 K SG CYS 201 J CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf23 L SG CYS 22 L CYS 22 1_555 L SG CYS 96 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf24 L SG CYS 146 L CYS 139 1_555 L SG CYS 201 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C PCA 1 C PCA 1 1_555 C N LEU 2 C LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 D C PCA 1 E PCA 1 1_555 D N LEU 2 E LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 E C PCA 1 G PCA 1 1_555 E N LEU 2 G LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 F C PCA 1 I PCA 1 1_555 F N LEU 2 I LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 G C PCA 1 K PCA 1 1_555 G N LEU 2 K LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 H C PCA 1 D PCA 1 1_555 H N PHE 2 D PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 K C PCA 1 J PCA 1 1_555 K N PHE 2 J PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 L C PCA 1 L PCA 1 1_555 L N PHE 2 L PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 351 n n S O2 SO4 doub 352 n n S O3 SO4 sing 353 n n S O4 SO4 sing 354 n n # _atom_sites.entry_id 6M87 _atom_sites.fract_transf_matrix[1][1] 0.005362 _atom_sites.fract_transf_matrix[1][2] 0.003096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 2M9 B 1 301 1 2M9 2M9 . N 4 SO4 B 1 302 2 SO4 SO4 . O 3 2M9 E 1 301 2 2M9 2M9 . P 3 2M9 G 1 301 6 2M9 2M9 . Q 4 SO4 G 1 302 5 SO4 SO4 . R 4 SO4 I 1 301 1 SO4 SO4 . S 3 2M9 K 1 301 3 2M9 2M9 . T 3 2M9 D 1 301 4 2M9 2M9 . U 4 SO4 D 1 302 3 SO4 SO4 . V 4 SO4 F 1 301 4 SO4 SO4 . W 3 2M9 J 1 301 5 2M9 2M9 . X 4 SO4 L 1 301 6 SO4 SO4 . Y 5 HOH A 1 301 162 HOH HOH . Y 5 HOH A 2 302 121 HOH HOH . Y 5 HOH A 3 303 356 HOH HOH . Y 5 HOH A 4 304 182 HOH HOH . Y 5 HOH A 5 305 37 HOH HOH . Y 5 HOH A 6 306 344 HOH HOH . Y 5 HOH A 7 307 93 HOH HOH . Y 5 HOH A 8 308 168 HOH HOH . Y 5 HOH A 9 309 105 HOH HOH . Y 5 HOH A 10 310 58 HOH HOH . Y 5 HOH A 11 311 357 HOH HOH . Y 5 HOH A 12 312 319 HOH HOH . Y 5 HOH A 13 313 292 HOH HOH . Y 5 HOH A 14 314 309 HOH HOH . Y 5 HOH A 15 315 315 HOH HOH . Z 5 HOH B 1 401 132 HOH HOH . Z 5 HOH B 2 402 246 HOH HOH . Z 5 HOH B 3 403 241 HOH HOH . Z 5 HOH B 4 404 188 HOH HOH . Z 5 HOH B 5 405 40 HOH HOH . Z 5 HOH B 6 406 256 HOH HOH . Z 5 HOH B 7 407 34 HOH HOH . Z 5 HOH B 8 408 260 HOH HOH . Z 5 HOH B 9 409 318 HOH HOH . Z 5 HOH B 10 410 355 HOH HOH . Z 5 HOH B 11 411 5 HOH HOH . Z 5 HOH B 12 412 22 HOH HOH . Z 5 HOH B 13 413 116 HOH HOH . Z 5 HOH B 14 414 143 HOH HOH . Z 5 HOH B 15 415 119 HOH HOH . AA 5 HOH C 1 301 322 HOH HOH . AA 5 HOH C 2 302 73 HOH HOH . AA 5 HOH C 3 303 51 HOH HOH . AA 5 HOH C 4 304 38 HOH HOH . AA 5 HOH C 5 305 54 HOH HOH . AA 5 HOH C 6 306 71 HOH HOH . AA 5 HOH C 7 307 213 HOH HOH . AA 5 HOH C 8 308 257 HOH HOH . BA 5 HOH E 1 401 275 HOH HOH . BA 5 HOH E 2 402 75 HOH HOH . BA 5 HOH E 3 403 23 HOH HOH . BA 5 HOH E 4 404 244 HOH HOH . BA 5 HOH E 5 405 302 HOH HOH . BA 5 HOH E 6 406 149 HOH HOH . BA 5 HOH E 7 407 301 HOH HOH . BA 5 HOH E 8 408 221 HOH HOH . BA 5 HOH E 9 409 197 HOH HOH . BA 5 HOH E 10 410 294 HOH HOH . BA 5 HOH E 11 411 45 HOH HOH . BA 5 HOH E 12 412 216 HOH HOH . BA 5 HOH E 13 413 171 HOH HOH . CA 5 HOH G 1 401 42 HOH HOH . CA 5 HOH G 2 402 338 HOH HOH . CA 5 HOH G 3 403 291 HOH HOH . CA 5 HOH G 4 404 154 HOH HOH . CA 5 HOH G 5 405 253 HOH HOH . CA 5 HOH G 6 406 342 HOH HOH . CA 5 HOH G 7 407 229 HOH HOH . CA 5 HOH G 8 408 101 HOH HOH . CA 5 HOH G 9 409 160 HOH HOH . CA 5 HOH G 10 410 282 HOH HOH . DA 5 HOH I 1 401 9 HOH HOH . DA 5 HOH I 2 402 220 HOH HOH . DA 5 HOH I 3 403 307 HOH HOH . DA 5 HOH I 4 404 210 HOH HOH . DA 5 HOH I 5 405 114 HOH HOH . DA 5 HOH I 6 406 350 HOH HOH . DA 5 HOH I 7 407 26 HOH HOH . DA 5 HOH I 8 408 289 HOH HOH . DA 5 HOH I 9 409 91 HOH HOH . DA 5 HOH I 10 410 98 HOH HOH . DA 5 HOH I 11 411 240 HOH HOH . DA 5 HOH I 12 412 359 HOH HOH . DA 5 HOH I 13 413 89 HOH HOH . DA 5 HOH I 14 414 157 HOH HOH . DA 5 HOH I 15 415 14 HOH HOH . DA 5 HOH I 16 416 266 HOH HOH . DA 5 HOH I 17 417 270 HOH HOH . EA 5 HOH K 1 401 166 HOH HOH . EA 5 HOH K 2 402 349 HOH HOH . EA 5 HOH K 3 403 1 HOH HOH . EA 5 HOH K 4 404 329 HOH HOH . EA 5 HOH K 5 405 199 HOH HOH . EA 5 HOH K 6 406 11 HOH HOH . EA 5 HOH K 7 407 8 HOH HOH . EA 5 HOH K 8 408 279 HOH HOH . EA 5 HOH K 9 409 124 HOH HOH . EA 5 HOH K 10 410 137 HOH HOH . EA 5 HOH K 11 411 39 HOH HOH . EA 5 HOH K 12 412 341 HOH HOH . FA 5 HOH D 1 401 53 HOH HOH . FA 5 HOH D 2 402 32 HOH HOH . FA 5 HOH D 3 403 141 HOH HOH . FA 5 HOH D 4 404 265 HOH HOH . FA 5 HOH D 5 405 147 HOH HOH . FA 5 HOH D 6 406 10 HOH HOH . FA 5 HOH D 7 407 288 HOH HOH . FA 5 HOH D 8 408 107 HOH HOH . FA 5 HOH D 9 409 50 HOH HOH . FA 5 HOH D 10 410 70 HOH HOH . FA 5 HOH D 11 411 152 HOH HOH . FA 5 HOH D 12 412 63 HOH HOH . GA 5 HOH F 1 401 150 HOH HOH . GA 5 HOH F 2 402 248 HOH HOH . GA 5 HOH F 3 403 72 HOH HOH . GA 5 HOH F 4 404 95 HOH HOH . GA 5 HOH F 5 405 281 HOH HOH . GA 5 HOH F 6 406 358 HOH HOH . GA 5 HOH F 7 407 86 HOH HOH . HA 5 HOH H 1 301 243 HOH HOH . HA 5 HOH H 2 302 193 HOH HOH . HA 5 HOH H 3 303 36 HOH HOH . HA 5 HOH H 4 304 196 HOH HOH . HA 5 HOH H 5 305 185 HOH HOH . HA 5 HOH H 6 306 332 HOH HOH . HA 5 HOH H 7 307 283 HOH HOH . HA 5 HOH H 8 308 67 HOH HOH . HA 5 HOH H 9 309 189 HOH HOH . HA 5 HOH H 10 310 35 HOH HOH . HA 5 HOH H 11 311 262 HOH HOH . HA 5 HOH H 12 312 7 HOH HOH . HA 5 HOH H 13 313 190 HOH HOH . IA 5 HOH J 1 401 25 HOH HOH . IA 5 HOH J 2 402 87 HOH HOH . IA 5 HOH J 3 403 77 HOH HOH . IA 5 HOH J 4 404 18 HOH HOH . IA 5 HOH J 5 405 13 HOH HOH . IA 5 HOH J 6 406 207 HOH HOH . IA 5 HOH J 7 407 59 HOH HOH . IA 5 HOH J 8 408 84 HOH HOH . JA 5 HOH L 1 401 264 HOH HOH . JA 5 HOH L 2 402 175 HOH HOH . JA 5 HOH L 3 403 79 HOH HOH . JA 5 HOH L 4 404 103 HOH HOH . JA 5 HOH L 5 405 61 HOH HOH . JA 5 HOH L 6 406 360 HOH HOH . JA 5 HOH L 7 407 298 HOH HOH . JA 5 HOH L 8 408 123 HOH HOH . JA 5 HOH L 9 409 17 HOH HOH . JA 5 HOH L 10 410 112 HOH HOH . JA 5 HOH L 11 411 148 HOH HOH . JA 5 HOH L 12 412 211 HOH HOH . JA 5 HOH L 13 413 280 HOH HOH . JA 5 HOH L 14 414 290 HOH HOH . JA 5 HOH L 15 415 28 HOH HOH . JA 5 HOH L 16 416 80 HOH HOH . JA 5 HOH L 17 417 361 HOH HOH . JA 5 HOH L 18 418 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . N 4 27.696 -37.714 -21.744 1 77.2 ? S SO4 302 B 1 HETATM 2 O O1 SO4 . . . N 4 26.586 -36.867 -22.169 1 63.1 ? O1 SO4 302 B 1 HETATM 3 O O2 SO4 . . . N 4 27.922 -38.762 -22.734 1 75.14 ? O2 SO4 302 B 1 HETATM 4 O O3 SO4 . . . N 4 27.379 -38.332 -20.46 1 72 ? O3 SO4 302 B 1 HETATM 5 O O4 SO4 . . . N 4 28.9 -36.899 -21.611 1 71.4 ? O4 SO4 302 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #