data_6M88 # _model_server_result.job_id TgBNsKjPZbMbQBKuoaOPcw _model_server_result.datetime_utc '2024-11-23 23:12:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M88 # _exptl.entry_id 6M88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M88 _cell.length_a 77.717 _cell.length_b 77.717 _cell.length_c 84.465 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O8' _chem_comp.formula_weight 318.235 _chem_comp.id MYC _chem_comp.mon_nstd_flag . _chem_comp.name 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2-(3,4,5-TRIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-4H-1-BENZOPYRAN-4-ONE;3,3',4',5,5',7-HEXAHYDROXYFLAVONE;MYRICETIN;CANNABISCETIN" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYC doub 237 n y C1 C6 MYC sing 238 n y C1 H1 MYC sing 239 n n C2 C3 MYC sing 240 n y C2 O30 MYC sing 241 n n C3 C4 MYC doub 242 n y C3 C9 MYC sing 243 n y C4 C5 MYC sing 244 n y C4 O12 MYC sing 245 n y C5 C6 MYC doub 246 n y C5 H5 MYC sing 247 n n C6 O29 MYC sing 248 n n C9 C10 MYC sing 249 n y C9 O13 MYC doub 250 n n C10 C11 MYC doub 251 n y C10 O27 MYC sing 252 n n C11 C14 MYC sing 253 n y C11 O12 MYC sing 254 n y C14 C15 MYC doub 255 n y C14 C19 MYC sing 256 n y C15 C16 MYC sing 257 n y C15 H15 MYC sing 258 n n C16 C17 MYC doub 259 n y C16 O25 MYC sing 260 n n C17 C18 MYC sing 261 n y C17 O24 MYC sing 262 n n C18 C19 MYC doub 263 n y C18 O23 MYC sing 264 n n C19 H19 MYC sing 265 n n O23 HO3 MYC sing 266 n n O24 HO4 MYC sing 267 n n O25 HO5 MYC sing 268 n n O27 HO7 MYC sing 269 n n O29 HO9 MYC sing 270 n n O30 HO0 MYC sing 271 n n # _atom_sites.entry_id 6M88 _atom_sites.fract_transf_matrix[1][1] 0.012867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYC A 1 501 501 MYC MYC . C 3 HOH A 1 601 170 HOH HOH . C 3 HOH A 2 602 134 HOH HOH . C 3 HOH A 3 603 62 HOH HOH . C 3 HOH A 4 604 75 HOH HOH . C 3 HOH A 5 605 12 HOH HOH . C 3 HOH A 6 606 59 HOH HOH . C 3 HOH A 7 607 94 HOH HOH . C 3 HOH A 8 608 128 HOH HOH . C 3 HOH A 9 609 29 HOH HOH . C 3 HOH A 10 610 145 HOH HOH . C 3 HOH A 11 611 66 HOH HOH . C 3 HOH A 12 612 83 HOH HOH . C 3 HOH A 13 613 122 HOH HOH . C 3 HOH A 14 614 8 HOH HOH . C 3 HOH A 15 615 124 HOH HOH . C 3 HOH A 16 616 119 HOH HOH . C 3 HOH A 17 617 33 HOH HOH . C 3 HOH A 18 618 106 HOH HOH . C 3 HOH A 19 619 127 HOH HOH . C 3 HOH A 20 620 133 HOH HOH . C 3 HOH A 21 621 156 HOH HOH . C 3 HOH A 22 622 61 HOH HOH . C 3 HOH A 23 623 51 HOH HOH . C 3 HOH A 24 624 21 HOH HOH . C 3 HOH A 25 625 19 HOH HOH . C 3 HOH A 26 626 96 HOH HOH . C 3 HOH A 27 627 149 HOH HOH . C 3 HOH A 28 628 44 HOH HOH . C 3 HOH A 29 629 82 HOH HOH . C 3 HOH A 30 630 50 HOH HOH . C 3 HOH A 31 631 67 HOH HOH . C 3 HOH A 32 632 68 HOH HOH . C 3 HOH A 33 633 147 HOH HOH . C 3 HOH A 34 634 49 HOH HOH . C 3 HOH A 35 635 64 HOH HOH . C 3 HOH A 36 636 86 HOH HOH . C 3 HOH A 37 637 28 HOH HOH . C 3 HOH A 38 638 43 HOH HOH . C 3 HOH A 39 639 34 HOH HOH . C 3 HOH A 40 640 108 HOH HOH . C 3 HOH A 41 641 77 HOH HOH . C 3 HOH A 42 642 72 HOH HOH . C 3 HOH A 43 643 35 HOH HOH . C 3 HOH A 44 644 120 HOH HOH . C 3 HOH A 45 645 89 HOH HOH . C 3 HOH A 46 646 54 HOH HOH . C 3 HOH A 47 647 73 HOH HOH . C 3 HOH A 48 648 18 HOH HOH . C 3 HOH A 49 649 123 HOH HOH . C 3 HOH A 50 650 176 HOH HOH . C 3 HOH A 51 651 166 HOH HOH . C 3 HOH A 52 652 25 HOH HOH . C 3 HOH A 53 653 137 HOH HOH . C 3 HOH A 54 654 6 HOH HOH . C 3 HOH A 55 655 13 HOH HOH . C 3 HOH A 56 656 2 HOH HOH . C 3 HOH A 57 657 118 HOH HOH . C 3 HOH A 58 658 10 HOH HOH . C 3 HOH A 59 659 24 HOH HOH . C 3 HOH A 60 660 15 HOH HOH . C 3 HOH A 61 661 39 HOH HOH . C 3 HOH A 62 662 80 HOH HOH . C 3 HOH A 63 663 47 HOH HOH . C 3 HOH A 64 664 70 HOH HOH . C 3 HOH A 65 665 3 HOH HOH . C 3 HOH A 66 666 45 HOH HOH . C 3 HOH A 67 667 148 HOH HOH . C 3 HOH A 68 668 48 HOH HOH . C 3 HOH A 69 669 57 HOH HOH . C 3 HOH A 70 670 40 HOH HOH . C 3 HOH A 71 671 30 HOH HOH . C 3 HOH A 72 672 1 HOH HOH . C 3 HOH A 73 673 177 HOH HOH . C 3 HOH A 74 674 100 HOH HOH . C 3 HOH A 75 675 157 HOH HOH . C 3 HOH A 76 676 150 HOH HOH . C 3 HOH A 77 677 171 HOH HOH . C 3 HOH A 78 678 98 HOH HOH . C 3 HOH A 79 679 92 HOH HOH . C 3 HOH A 80 680 4 HOH HOH . C 3 HOH A 81 681 22 HOH HOH . C 3 HOH A 82 682 142 HOH HOH . C 3 HOH A 83 683 9 HOH HOH . C 3 HOH A 84 684 46 HOH HOH . C 3 HOH A 85 685 74 HOH HOH . C 3 HOH A 86 686 31 HOH HOH . C 3 HOH A 87 687 129 HOH HOH . C 3 HOH A 88 688 32 HOH HOH . C 3 HOH A 89 689 85 HOH HOH . C 3 HOH A 90 690 125 HOH HOH . C 3 HOH A 91 691 41 HOH HOH . C 3 HOH A 92 692 136 HOH HOH . C 3 HOH A 93 693 139 HOH HOH . C 3 HOH A 94 694 78 HOH HOH . C 3 HOH A 95 695 56 HOH HOH . C 3 HOH A 96 696 158 HOH HOH . C 3 HOH A 97 697 144 HOH HOH . C 3 HOH A 98 698 23 HOH HOH . C 3 HOH A 99 699 37 HOH HOH . C 3 HOH A 100 700 146 HOH HOH . C 3 HOH A 101 701 103 HOH HOH . C 3 HOH A 102 702 115 HOH HOH . C 3 HOH A 103 703 99 HOH HOH . C 3 HOH A 104 704 109 HOH HOH . C 3 HOH A 105 705 97 HOH HOH . C 3 HOH A 106 706 52 HOH HOH . C 3 HOH A 107 707 111 HOH HOH . C 3 HOH A 108 708 11 HOH HOH . C 3 HOH A 109 709 131 HOH HOH . C 3 HOH A 110 710 104 HOH HOH . C 3 HOH A 111 711 91 HOH HOH . C 3 HOH A 112 712 14 HOH HOH . C 3 HOH A 113 713 159 HOH HOH . C 3 HOH A 114 714 151 HOH HOH . C 3 HOH A 115 715 164 HOH HOH . C 3 HOH A 116 716 27 HOH HOH . C 3 HOH A 117 717 69 HOH HOH . C 3 HOH A 118 718 5 HOH HOH . C 3 HOH A 119 719 65 HOH HOH . C 3 HOH A 120 720 20 HOH HOH . C 3 HOH A 121 721 42 HOH HOH . C 3 HOH A 122 722 17 HOH HOH . C 3 HOH A 123 723 53 HOH HOH . C 3 HOH A 124 724 7 HOH HOH . C 3 HOH A 125 725 16 HOH HOH . C 3 HOH A 126 726 60 HOH HOH . C 3 HOH A 127 727 130 HOH HOH . C 3 HOH A 128 728 76 HOH HOH . C 3 HOH A 129 729 79 HOH HOH . C 3 HOH A 130 730 138 HOH HOH . C 3 HOH A 131 731 132 HOH HOH . C 3 HOH A 132 732 90 HOH HOH . C 3 HOH A 133 733 152 HOH HOH . C 3 HOH A 134 734 155 HOH HOH . C 3 HOH A 135 735 172 HOH HOH . C 3 HOH A 136 736 71 HOH HOH . C 3 HOH A 137 737 38 HOH HOH . C 3 HOH A 138 738 101 HOH HOH . C 3 HOH A 139 739 107 HOH HOH . C 3 HOH A 140 740 55 HOH HOH . C 3 HOH A 141 741 173 HOH HOH . C 3 HOH A 142 742 88 HOH HOH . C 3 HOH A 143 743 135 HOH HOH . C 3 HOH A 144 744 117 HOH HOH . C 3 HOH A 145 745 95 HOH HOH . C 3 HOH A 146 746 81 HOH HOH . C 3 HOH A 147 747 105 HOH HOH . C 3 HOH A 148 748 121 HOH HOH . C 3 HOH A 149 749 169 HOH HOH . C 3 HOH A 150 750 63 HOH HOH . C 3 HOH A 151 751 163 HOH HOH . C 3 HOH A 152 752 87 HOH HOH . C 3 HOH A 153 753 143 HOH HOH . C 3 HOH A 154 754 114 HOH HOH . C 3 HOH A 155 755 167 HOH HOH . C 3 HOH A 156 756 168 HOH HOH . C 3 HOH A 157 757 160 HOH HOH . C 3 HOH A 158 758 93 HOH HOH . C 3 HOH A 159 759 84 HOH HOH . C 3 HOH A 160 760 161 HOH HOH . C 3 HOH A 161 761 116 HOH HOH . C 3 HOH A 162 762 165 HOH HOH . C 3 HOH A 163 763 153 HOH HOH . C 3 HOH A 164 764 126 HOH HOH . C 3 HOH A 165 765 141 HOH HOH . C 3 HOH A 166 766 174 HOH HOH . C 3 HOH A 167 767 162 HOH HOH . C 3 HOH A 168 768 175 HOH HOH . C 3 HOH A 169 769 58 HOH HOH . C 3 HOH A 170 770 36 HOH HOH . C 3 HOH A 171 771 140 HOH HOH . C 3 HOH A 172 772 102 HOH HOH . C 3 HOH A 173 773 154 HOH HOH . C 3 HOH A 174 774 26 HOH HOH . C 3 HOH A 175 775 112 HOH HOH . C 3 HOH A 176 776 110 HOH HOH . C 3 HOH A 177 777 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYC . . . B 2 7.228 24.72 21.89 1 16.65 ? C1 MYC 501 A 1 HETATM 2 C C2 MYC . . . B 2 6.285 25.745 21.795 1 16.41 ? C2 MYC 501 A 1 HETATM 3 C C3 MYC . . . B 2 5.814 26.382 23.029 1 16.7 ? C3 MYC 501 A 1 HETATM 4 C C4 MYC . . . B 2 6.333 25.892 24.314 1 17.52 ? C4 MYC 501 A 1 HETATM 5 C C5 MYC . . . B 2 7.251 24.859 24.331 1 17.28 ? C5 MYC 501 A 1 HETATM 6 C C6 MYC . . . B 2 7.701 24.289 23.138 1 17.11 ? C6 MYC 501 A 1 HETATM 7 C C9 MYC . . . B 2 4.822 27.465 23.028 1 17.53 ? C9 MYC 501 A 1 HETATM 8 C C10 MYC . . . B 2 4.409 28.044 24.317 1 20.26 ? C10 MYC 501 A 1 HETATM 9 C C11 MYC . . . B 2 5.015 27.5 25.571 1 22.83 ? C11 MYC 501 A 1 HETATM 10 C C14 MYC . . . B 2 4.663 27.946 26.945 1 27.2 ? C14 MYC 501 A 1 HETATM 11 C C15 MYC . . . B 2 4.964 27.028 27.967 1 31.56 ? C15 MYC 501 A 1 HETATM 12 C C16 MYC . . . B 2 4.664 27.287 29.288 1 34.92 ? C16 MYC 501 A 1 HETATM 13 C C17 MYC . . . B 2 3.997 28.567 29.628 1 33.84 ? C17 MYC 501 A 1 HETATM 14 C C18 MYC . . . B 2 3.686 29.499 28.527 1 30.25 ? C18 MYC 501 A 1 HETATM 15 C C19 MYC . . . B 2 4.015 29.157 27.226 1 28.1 ? C19 MYC 501 A 1 HETATM 16 O O12 MYC . . . B 2 5.914 26.466 25.479 1 22.43 ? O12 MYC 501 A 1 HETATM 17 O O13 MYC . . . B 2 4.361 27.891 21.964 1 18.39 ? O13 MYC 501 A 1 HETATM 18 O O23 MYC . . . B 2 3.071 30.68 28.794 1 34.12 ? O23 MYC 501 A 1 HETATM 19 O O24 MYC . . . B 2 3.674 28.901 30.898 1 41.21 ? O24 MYC 501 A 1 HETATM 20 O O25 MYC . . . B 2 4.998 26.357 30.215 1 41 ? O25 MYC 501 A 1 HETATM 21 O O27 MYC . . . B 2 3.522 29.057 24.28 1 22.64 ? O27 MYC 501 A 1 HETATM 22 O O29 MYC . . . B 2 8.63 23.293 23.207 1 17.67 ? O29 MYC 501 A 1 HETATM 23 O O30 MYC . . . B 2 5.794 26.185 20.615 1 17.59 ? O30 MYC 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #