data_6M8A # _model_server_result.job_id SVRkw3kY2-pPKbz5u9_kWQ _model_server_result.datetime_utc '2024-11-24 09:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M8A # _exptl.entry_id 6M8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M8A _cell.length_a 78.292 _cell.length_b 78.292 _cell.length_c 85.045 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id LU2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Luteolin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LU2 doub 194 n y C1 C6 LU2 sing 195 n y C1 H1 LU2 sing 196 n n O1 C2 LU2 sing 197 n n O1 HO1 LU2 sing 198 n n C2 C3 LU2 sing 199 n y C4 O2 LU2 sing 200 n n O2 HO2 LU2 sing 201 n n C3 C4 LU2 doub 202 n y C3 H3 LU2 sing 203 n n C7 O3 LU2 doub 204 n n C5 C4 LU2 sing 205 n y O4 C6 LU2 sing 206 n n O4 C9 LU2 sing 207 n n C6 C5 LU2 doub 208 n y C5 C7 LU2 sing 209 n n C12 O5 LU2 sing 210 n n O5 HO5 LU2 sing 211 n n O6 C13 LU2 sing 212 n n O6 HO6 LU2 sing 213 n n C8 C7 LU2 sing 214 n n C9 C8 LU2 doub 215 n n C8 H8 LU2 sing 216 n n C10 C9 LU2 sing 217 n n C15 C10 LU2 doub 218 n y C10 C11 LU2 sing 219 n y C12 C11 LU2 doub 220 n y C11 H11 LU2 sing 221 n n C13 C12 LU2 sing 222 n y C14 C13 LU2 doub 223 n y C14 C15 LU2 sing 224 n y C14 H14 LU2 sing 225 n n C15 H15 LU2 sing 226 n n # _atom_sites.entry_id 6M8A _atom_sites.fract_transf_matrix[1][1] 0.012773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LU2 A 1 501 501 LU2 LU2 . C 3 HOH A 1 601 100 HOH HOH . C 3 HOH A 2 602 106 HOH HOH . C 3 HOH A 3 603 63 HOH HOH . C 3 HOH A 4 604 30 HOH HOH . C 3 HOH A 5 605 17 HOH HOH . C 3 HOH A 6 606 41 HOH HOH . C 3 HOH A 7 607 71 HOH HOH . C 3 HOH A 8 608 42 HOH HOH . C 3 HOH A 9 609 34 HOH HOH . C 3 HOH A 10 610 115 HOH HOH . C 3 HOH A 11 611 27 HOH HOH . C 3 HOH A 12 612 48 HOH HOH . C 3 HOH A 13 613 25 HOH HOH . C 3 HOH A 14 614 29 HOH HOH . C 3 HOH A 15 615 120 HOH HOH . C 3 HOH A 16 616 19 HOH HOH . C 3 HOH A 17 617 43 HOH HOH . C 3 HOH A 18 618 114 HOH HOH . C 3 HOH A 19 619 39 HOH HOH . C 3 HOH A 20 620 18 HOH HOH . C 3 HOH A 21 621 104 HOH HOH . C 3 HOH A 22 622 112 HOH HOH . C 3 HOH A 23 623 56 HOH HOH . C 3 HOH A 24 624 35 HOH HOH . C 3 HOH A 25 625 6 HOH HOH . C 3 HOH A 26 626 78 HOH HOH . C 3 HOH A 27 627 54 HOH HOH . C 3 HOH A 28 628 51 HOH HOH . C 3 HOH A 29 629 38 HOH HOH . C 3 HOH A 30 630 10 HOH HOH . C 3 HOH A 31 631 52 HOH HOH . C 3 HOH A 32 632 66 HOH HOH . C 3 HOH A 33 633 55 HOH HOH . C 3 HOH A 34 634 37 HOH HOH . C 3 HOH A 35 635 24 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 61 HOH HOH . C 3 HOH A 38 638 21 HOH HOH . C 3 HOH A 39 639 14 HOH HOH . C 3 HOH A 40 640 8 HOH HOH . C 3 HOH A 41 641 47 HOH HOH . C 3 HOH A 42 642 87 HOH HOH . C 3 HOH A 43 643 111 HOH HOH . C 3 HOH A 44 644 3 HOH HOH . C 3 HOH A 45 645 91 HOH HOH . C 3 HOH A 46 646 72 HOH HOH . C 3 HOH A 47 647 81 HOH HOH . C 3 HOH A 48 648 11 HOH HOH . C 3 HOH A 49 649 45 HOH HOH . C 3 HOH A 50 650 76 HOH HOH . C 3 HOH A 51 651 1 HOH HOH . C 3 HOH A 52 652 13 HOH HOH . C 3 HOH A 53 653 9 HOH HOH . C 3 HOH A 54 654 92 HOH HOH . C 3 HOH A 55 655 70 HOH HOH . C 3 HOH A 56 656 2 HOH HOH . C 3 HOH A 57 657 117 HOH HOH . C 3 HOH A 58 658 65 HOH HOH . C 3 HOH A 59 659 57 HOH HOH . C 3 HOH A 60 660 23 HOH HOH . C 3 HOH A 61 661 28 HOH HOH . C 3 HOH A 62 662 12 HOH HOH . C 3 HOH A 63 663 99 HOH HOH . C 3 HOH A 64 664 85 HOH HOH . C 3 HOH A 65 665 46 HOH HOH . C 3 HOH A 66 666 44 HOH HOH . C 3 HOH A 67 667 118 HOH HOH . C 3 HOH A 68 668 67 HOH HOH . C 3 HOH A 69 669 4 HOH HOH . C 3 HOH A 70 670 103 HOH HOH . C 3 HOH A 71 671 77 HOH HOH . C 3 HOH A 72 672 116 HOH HOH . C 3 HOH A 73 673 22 HOH HOH . C 3 HOH A 74 674 33 HOH HOH . C 3 HOH A 75 675 58 HOH HOH . C 3 HOH A 76 676 83 HOH HOH . C 3 HOH A 77 677 5 HOH HOH . C 3 HOH A 78 678 31 HOH HOH . C 3 HOH A 79 679 26 HOH HOH . C 3 HOH A 80 680 74 HOH HOH . C 3 HOH A 81 681 20 HOH HOH . C 3 HOH A 82 682 97 HOH HOH . C 3 HOH A 83 683 95 HOH HOH . C 3 HOH A 84 684 16 HOH HOH . C 3 HOH A 85 685 93 HOH HOH . C 3 HOH A 86 686 80 HOH HOH . C 3 HOH A 87 687 50 HOH HOH . C 3 HOH A 88 688 69 HOH HOH . C 3 HOH A 89 689 32 HOH HOH . C 3 HOH A 90 690 84 HOH HOH . C 3 HOH A 91 691 7 HOH HOH . C 3 HOH A 92 692 96 HOH HOH . C 3 HOH A 93 693 53 HOH HOH . C 3 HOH A 94 694 101 HOH HOH . C 3 HOH A 95 695 15 HOH HOH . C 3 HOH A 96 696 40 HOH HOH . C 3 HOH A 97 697 109 HOH HOH . C 3 HOH A 98 698 113 HOH HOH . C 3 HOH A 99 699 82 HOH HOH . C 3 HOH A 100 700 119 HOH HOH . C 3 HOH A 101 701 62 HOH HOH . C 3 HOH A 102 702 108 HOH HOH . C 3 HOH A 103 703 75 HOH HOH . C 3 HOH A 104 704 107 HOH HOH . C 3 HOH A 105 705 90 HOH HOH . C 3 HOH A 106 706 105 HOH HOH . C 3 HOH A 107 707 64 HOH HOH . C 3 HOH A 108 708 79 HOH HOH . C 3 HOH A 109 709 110 HOH HOH . C 3 HOH A 110 710 86 HOH HOH . C 3 HOH A 111 711 88 HOH HOH . C 3 HOH A 112 712 73 HOH HOH . C 3 HOH A 113 713 59 HOH HOH . C 3 HOH A 114 714 94 HOH HOH . C 3 HOH A 115 715 89 HOH HOH . C 3 HOH A 116 716 68 HOH HOH . C 3 HOH A 117 717 102 HOH HOH . C 3 HOH A 118 718 98 HOH HOH . C 3 HOH A 119 719 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LU2 . . . B 2 7.398 25.087 24.703 1 28.34 ? C1 LU2 501 A 1 HETATM 2 O O1 LU2 . . . B 2 8.892 23.52 23.684 1 30.14 ? O1 LU2 501 A 1 HETATM 3 C C2 LU2 . . . B 2 7.889 24.439 23.563 1 28.91 ? C2 LU2 501 A 1 HETATM 4 O O2 LU2 . . . B 2 5.844 25.875 20.893 1 22.31 ? O2 LU2 501 A 1 HETATM 5 C C3 LU2 . . . B 2 7.376 24.701 22.288 1 25.36 ? C3 LU2 501 A 1 HETATM 6 O O3 LU2 . . . B 2 4.197 27.569 22.083 1 24.19 ? O3 LU2 501 A 1 HETATM 7 C C4 LU2 . . . B 2 6.347 25.617 22.111 1 23.95 ? C4 LU2 501 A 1 HETATM 8 O O4 LU2 . . . B 2 5.862 26.691 25.674 1 30.77 ? O4 LU2 501 A 1 HETATM 9 C C5 LU2 . . . B 2 5.799 26.328 23.279 1 24.67 ? C5 LU2 501 A 1 HETATM 10 O O5 LU2 . . . B 2 4.492 27.266 30.406 1 49.6 ? O5 LU2 501 A 1 HETATM 11 C C6 LU2 . . . B 2 6.369 26.021 24.598 1 26.99 ? C6 LU2 501 A 1 HETATM 12 O O6 LU2 . . . B 2 3.363 29.902 30.577 1 49.51 ? O6 LU2 501 A 1 HETATM 13 C C7 LU2 . . . B 2 4.698 27.324 23.192 1 26.33 ? C7 LU2 501 A 1 HETATM 14 C C8 LU2 . . . B 2 4.245 27.948 24.357 1 24.99 ? C8 LU2 501 A 1 HETATM 15 C C9 LU2 . . . B 2 4.828 27.618 25.592 1 30.4 ? C9 LU2 501 A 1 HETATM 16 C C10 LU2 . . . B 2 4.413 28.24 26.88 1 34.99 ? C10 LU2 501 A 1 HETATM 17 C C11 LU2 . . . B 2 4.626 27.497 28.048 1 38.99 ? C11 LU2 501 A 1 HETATM 18 C C12 LU2 . . . B 2 4.288 28.015 29.288 1 40.83 ? C12 LU2 501 A 1 HETATM 19 C C13 LU2 . . . B 2 3.71 29.378 29.367 1 40.45 ? C13 LU2 501 A 1 HETATM 20 C C14 LU2 . . . B 2 3.515 30.094 28.186 1 38.74 ? C14 LU2 501 A 1 HETATM 21 C C15 LU2 . . . B 2 3.869 29.534 26.953 1 35.42 ? C15 LU2 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #