data_6M8B # _model_server_result.job_id ZwvgUIvLWmPYbQjH5kvngQ _model_server_result.datetime_utc '2024-11-13 12:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M8B # _exptl.entry_id 6M8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M8B _cell.length_a 78.085 _cell.length_b 78.085 _cell.length_c 84.679 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id KMP _chem_comp.mon_nstd_flag . _chem_comp.name 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAEMPHEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KMP doub 173 n y C1 C6 KMP sing 174 n y C1 H1 KMP sing 175 n n C2 C3 KMP sing 176 n y C2 O30 KMP sing 177 n n C3 C4 KMP doub 178 n y C3 C9 KMP sing 179 n y C4 C5 KMP sing 180 n y C4 O12 KMP sing 181 n y C5 C6 KMP doub 182 n y C5 H5 KMP sing 183 n n C6 O29 KMP sing 184 n n C9 C10 KMP sing 185 n y C9 O13 KMP doub 186 n n C10 C11 KMP doub 187 n y C10 O27 KMP sing 188 n n C11 C14 KMP sing 189 n y C11 O12 KMP sing 190 n y C14 C15 KMP doub 191 n y C14 C19 KMP sing 192 n y C15 C16 KMP sing 193 n y C15 H15 KMP sing 194 n n C16 C17 KMP doub 195 n y C16 H16 KMP sing 196 n n C17 C18 KMP sing 197 n y C17 O24 KMP sing 198 n n C18 C19 KMP doub 199 n y C18 H18 KMP sing 200 n n C19 H19 KMP sing 201 n n O24 H24 KMP sing 202 n n O27 H27 KMP sing 203 n n O29 H29 KMP sing 204 n n O30 H30 KMP sing 205 n n # _atom_sites.entry_id 6M8B _atom_sites.fract_transf_matrix[1][1] 0.012807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KMP A 1 501 501 KMP KMP . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 648 HOH HOH . C 3 HOH A 7 607 606 HOH HOH . C 3 HOH A 8 608 607 HOH HOH . C 3 HOH A 9 609 608 HOH HOH . C 3 HOH A 10 610 609 HOH HOH . C 3 HOH A 11 611 610 HOH HOH . C 3 HOH A 12 612 611 HOH HOH . C 3 HOH A 13 613 612 HOH HOH . C 3 HOH A 14 614 713 HOH HOH . C 3 HOH A 15 615 613 HOH HOH . C 3 HOH A 16 616 614 HOH HOH . C 3 HOH A 17 617 615 HOH HOH . C 3 HOH A 18 618 616 HOH HOH . C 3 HOH A 19 619 617 HOH HOH . C 3 HOH A 20 620 618 HOH HOH . C 3 HOH A 21 621 619 HOH HOH . C 3 HOH A 22 622 620 HOH HOH . C 3 HOH A 23 623 685 HOH HOH . C 3 HOH A 24 624 621 HOH HOH . C 3 HOH A 25 625 622 HOH HOH . C 3 HOH A 26 626 623 HOH HOH . C 3 HOH A 27 627 624 HOH HOH . C 3 HOH A 28 628 625 HOH HOH . C 3 HOH A 29 629 626 HOH HOH . C 3 HOH A 30 630 627 HOH HOH . C 3 HOH A 31 631 628 HOH HOH . C 3 HOH A 32 632 629 HOH HOH . C 3 HOH A 33 633 630 HOH HOH . C 3 HOH A 34 634 631 HOH HOH . C 3 HOH A 35 635 632 HOH HOH . C 3 HOH A 36 636 633 HOH HOH . C 3 HOH A 37 637 634 HOH HOH . C 3 HOH A 38 638 635 HOH HOH . C 3 HOH A 39 639 636 HOH HOH . C 3 HOH A 40 640 637 HOH HOH . C 3 HOH A 41 641 638 HOH HOH . C 3 HOH A 42 642 639 HOH HOH . C 3 HOH A 43 643 640 HOH HOH . C 3 HOH A 44 644 641 HOH HOH . C 3 HOH A 45 645 642 HOH HOH . C 3 HOH A 46 646 643 HOH HOH . C 3 HOH A 47 647 694 HOH HOH . C 3 HOH A 48 648 644 HOH HOH . C 3 HOH A 49 649 647 HOH HOH . C 3 HOH A 50 650 645 HOH HOH . C 3 HOH A 51 651 646 HOH HOH . C 3 HOH A 52 652 695 HOH HOH . C 3 HOH A 53 653 716 HOH HOH . C 3 HOH A 54 654 649 HOH HOH . C 3 HOH A 55 655 650 HOH HOH . C 3 HOH A 56 656 651 HOH HOH . C 3 HOH A 57 657 652 HOH HOH . C 3 HOH A 58 658 653 HOH HOH . C 3 HOH A 59 659 654 HOH HOH . C 3 HOH A 60 660 655 HOH HOH . C 3 HOH A 61 661 656 HOH HOH . C 3 HOH A 62 662 657 HOH HOH . C 3 HOH A 63 663 658 HOH HOH . C 3 HOH A 64 664 659 HOH HOH . C 3 HOH A 65 665 660 HOH HOH . C 3 HOH A 66 666 661 HOH HOH . C 3 HOH A 67 667 662 HOH HOH . C 3 HOH A 68 668 663 HOH HOH . C 3 HOH A 69 669 664 HOH HOH . C 3 HOH A 70 670 665 HOH HOH . C 3 HOH A 71 671 666 HOH HOH . C 3 HOH A 72 672 667 HOH HOH . C 3 HOH A 73 673 668 HOH HOH . C 3 HOH A 74 674 669 HOH HOH . C 3 HOH A 75 675 670 HOH HOH . C 3 HOH A 76 676 671 HOH HOH . C 3 HOH A 77 677 672 HOH HOH . C 3 HOH A 78 678 673 HOH HOH . C 3 HOH A 79 679 674 HOH HOH . C 3 HOH A 80 680 675 HOH HOH . C 3 HOH A 81 681 676 HOH HOH . C 3 HOH A 82 682 677 HOH HOH . C 3 HOH A 83 683 678 HOH HOH . C 3 HOH A 84 684 679 HOH HOH . C 3 HOH A 85 685 680 HOH HOH . C 3 HOH A 86 686 681 HOH HOH . C 3 HOH A 87 687 682 HOH HOH . C 3 HOH A 88 688 684 HOH HOH . C 3 HOH A 89 689 686 HOH HOH . C 3 HOH A 90 690 688 HOH HOH . C 3 HOH A 91 691 687 HOH HOH . C 3 HOH A 92 692 683 HOH HOH . C 3 HOH A 93 693 689 HOH HOH . C 3 HOH A 94 694 690 HOH HOH . C 3 HOH A 95 695 709 HOH HOH . C 3 HOH A 96 696 691 HOH HOH . C 3 HOH A 97 697 692 HOH HOH . C 3 HOH A 98 698 693 HOH HOH . C 3 HOH A 99 699 696 HOH HOH . C 3 HOH A 100 700 697 HOH HOH . C 3 HOH A 101 701 699 HOH HOH . C 3 HOH A 102 702 698 HOH HOH . C 3 HOH A 103 703 700 HOH HOH . C 3 HOH A 104 704 701 HOH HOH . C 3 HOH A 105 705 702 HOH HOH . C 3 HOH A 106 706 703 HOH HOH . C 3 HOH A 107 707 704 HOH HOH . C 3 HOH A 108 708 705 HOH HOH . C 3 HOH A 109 709 706 HOH HOH . C 3 HOH A 110 710 707 HOH HOH . C 3 HOH A 111 711 708 HOH HOH . C 3 HOH A 112 712 714 HOH HOH . C 3 HOH A 113 713 710 HOH HOH . C 3 HOH A 114 714 711 HOH HOH . C 3 HOH A 115 715 712 HOH HOH . C 3 HOH A 116 716 715 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KMP . . . B 2 7.343 24.75 22.019 1 19.1 ? C1 KMP 501 A 1 HETATM 2 C C2 KMP . . . B 2 6.381 25.742 21.905 1 18.76 ? C2 KMP 501 A 1 HETATM 3 C C3 KMP . . . B 2 5.869 26.385 23.123 1 19.59 ? C3 KMP 501 A 1 HETATM 4 C C4 KMP . . . B 2 6.408 25.939 24.42 1 21.46 ? C4 KMP 501 A 1 HETATM 5 C C5 KMP . . . B 2 7.367 24.942 24.451 1 20.36 ? C5 KMP 501 A 1 HETATM 6 C C6 KMP . . . B 2 7.82 24.356 23.27 1 19.58 ? C6 KMP 501 A 1 HETATM 7 C C9 KMP . . . B 2 4.849 27.458 23.099 1 21.55 ? C9 KMP 501 A 1 HETATM 8 C C10 KMP . . . B 2 4.416 28.029 24.386 1 22.4 ? C10 KMP 501 A 1 HETATM 9 C C11 KMP . . . B 2 5.023 27.518 25.653 1 24.7 ? C11 KMP 501 A 1 HETATM 10 C C14 KMP . . . B 2 4.672 27.993 27.023 1 30.27 ? C14 KMP 501 A 1 HETATM 11 C C15 KMP . . . B 2 4.046 29.219 27.289 1 32.08 ? C15 KMP 501 A 1 HETATM 12 C C16 KMP . . . B 2 3.744 29.584 28.599 1 31.24 ? C16 KMP 501 A 1 HETATM 13 C C17 KMP . . . B 2 4.051 28.735 29.651 1 33.22 ? C17 KMP 501 A 1 HETATM 14 C C18 KMP . . . B 2 4.669 27.514 29.4 1 35.99 ? C18 KMP 501 A 1 HETATM 15 C C19 KMP . . . B 2 4.969 27.141 28.096 1 33.27 ? C19 KMP 501 A 1 HETATM 16 O O12 KMP . . . B 2 5.962 26.513 25.58 1 24.51 ? O12 KMP 501 A 1 HETATM 17 O O13 KMP . . . B 2 4.347 27.856 22.029 1 22.24 ? O13 KMP 501 A 1 HETATM 18 O O24 KMP . . . B 2 3.754 29.095 30.927 1 35.36 ? O24 KMP 501 A 1 HETATM 19 O O27 KMP . . . B 2 3.494 29.011 24.336 1 26.82 ? O27 KMP 501 A 1 HETATM 20 O O29 KMP . . . B 2 8.769 23.385 23.333 1 20.95 ? O29 KMP 501 A 1 HETATM 21 O O30 KMP . . . B 2 5.892 26.121 20.708 1 19.18 ? O30 KMP 501 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #