data_6M8C # _model_server_result.job_id zkD8OeRg2XUYYlQ5jLJqPQ _model_server_result.datetime_utc '2024-11-14 17:42:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M8C # _exptl.entry_id 6M8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description isorhamnetin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M8C _cell.length_a 78.23 _cell.length_b 78.23 _cell.length_c 85.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H12 O7' _chem_comp.formula_weight 316.262 _chem_comp.id IRH _chem_comp.mon_nstd_flag . _chem_comp.name isorhamnetin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,5,7-trihydroxy-2-(4-hydroxy-3-methoxyphenyl)-4H-1-benzopyran-4-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C2 IRH sing 173 n n C2 C1 IRH doub 174 n y C2 C3 IRH sing 175 n y C1 C6 IRH sing 176 n y O13 C9 IRH doub 177 n n C3 C9 IRH sing 178 n n C3 C4 IRH doub 179 n y C9 C10 IRH sing 180 n n C6 O29 IRH sing 181 n n C6 C5 IRH doub 182 n y C4 C5 IRH sing 183 n y C4 O12 IRH sing 184 n n O27 C10 IRH sing 185 n n C10 C11 IRH doub 186 n n O12 C11 IRH sing 187 n n C11 C14 IRH sing 188 n n C14 C15 IRH doub 189 n y C14 C19 IRH sing 190 n y C15 C16 IRH sing 191 n y C19 C18 IRH doub 192 n y C16 O25 IRH sing 193 n n C16 C17 IRH doub 194 n y O25 C01 IRH sing 195 n n C18 C17 IRH sing 196 n y C17 O24 IRH sing 197 n n C01 H1 IRH sing 198 n n C01 H2 IRH sing 199 n n C01 H3 IRH sing 200 n n C15 H4 IRH sing 201 n n O24 H5 IRH sing 202 n n C18 H6 IRH sing 203 n n C19 H7 IRH sing 204 n n C5 H8 IRH sing 205 n n O29 H9 IRH sing 206 n n C1 H10 IRH sing 207 n n O30 H11 IRH sing 208 n n O27 H12 IRH sing 209 n n # _atom_sites.entry_id 6M8C _atom_sites.fract_transf_matrix[1][1] 0.012783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRH A 1 501 501 IRH IRH . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 623 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 625 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . C 3 HOH A 44 644 644 HOH HOH . C 3 HOH A 45 645 645 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 650 HOH HOH . C 3 HOH A 51 651 651 HOH HOH . C 3 HOH A 52 652 652 HOH HOH . C 3 HOH A 53 653 653 HOH HOH . C 3 HOH A 54 654 654 HOH HOH . C 3 HOH A 55 655 655 HOH HOH . C 3 HOH A 56 656 656 HOH HOH . C 3 HOH A 57 657 657 HOH HOH . C 3 HOH A 58 658 658 HOH HOH . C 3 HOH A 59 659 659 HOH HOH . C 3 HOH A 60 660 660 HOH HOH . C 3 HOH A 61 661 661 HOH HOH . C 3 HOH A 62 662 662 HOH HOH . C 3 HOH A 63 663 663 HOH HOH . C 3 HOH A 64 664 664 HOH HOH . C 3 HOH A 65 665 665 HOH HOH . C 3 HOH A 66 666 666 HOH HOH . C 3 HOH A 67 667 667 HOH HOH . C 3 HOH A 68 668 668 HOH HOH . C 3 HOH A 69 669 669 HOH HOH . C 3 HOH A 70 670 670 HOH HOH . C 3 HOH A 71 671 671 HOH HOH . C 3 HOH A 72 672 672 HOH HOH . C 3 HOH A 73 673 673 HOH HOH . C 3 HOH A 74 674 674 HOH HOH . C 3 HOH A 75 675 675 HOH HOH . C 3 HOH A 76 676 676 HOH HOH . C 3 HOH A 77 677 677 HOH HOH . C 3 HOH A 78 678 678 HOH HOH . C 3 HOH A 79 679 679 HOH HOH . C 3 HOH A 80 680 680 HOH HOH . C 3 HOH A 81 681 681 HOH HOH . C 3 HOH A 82 682 682 HOH HOH . C 3 HOH A 83 683 683 HOH HOH . C 3 HOH A 84 684 684 HOH HOH . C 3 HOH A 85 685 685 HOH HOH . C 3 HOH A 86 686 686 HOH HOH . C 3 HOH A 87 687 687 HOH HOH . C 3 HOH A 88 688 688 HOH HOH . C 3 HOH A 89 689 689 HOH HOH . C 3 HOH A 90 690 690 HOH HOH . C 3 HOH A 91 691 691 HOH HOH . C 3 HOH A 92 692 692 HOH HOH . C 3 HOH A 93 693 693 HOH HOH . C 3 HOH A 94 694 694 HOH HOH . C 3 HOH A 95 695 695 HOH HOH . C 3 HOH A 96 696 696 HOH HOH . C 3 HOH A 97 697 697 HOH HOH . C 3 HOH A 98 698 698 HOH HOH . C 3 HOH A 99 699 699 HOH HOH . C 3 HOH A 100 700 700 HOH HOH . C 3 HOH A 101 701 701 HOH HOH . C 3 HOH A 102 702 702 HOH HOH . C 3 HOH A 103 703 703 HOH HOH . C 3 HOH A 104 704 704 HOH HOH . C 3 HOH A 105 705 705 HOH HOH . C 3 HOH A 106 706 706 HOH HOH . C 3 HOH A 107 707 707 HOH HOH . C 3 HOH A 108 708 708 HOH HOH . C 3 HOH A 109 709 709 HOH HOH . C 3 HOH A 110 710 710 HOH HOH . C 3 HOH A 111 711 711 HOH HOH . C 3 HOH A 112 712 712 HOH HOH . C 3 HOH A 113 713 713 HOH HOH . C 3 HOH A 114 714 714 HOH HOH . C 3 HOH A 115 715 715 HOH HOH . C 3 HOH A 116 716 716 HOH HOH . C 3 HOH A 117 717 717 HOH HOH . C 3 HOH A 118 718 718 HOH HOH . C 3 HOH A 119 719 719 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 IRH . . . B 2 2.523 31.247 29.413 0.5 10.84 ? C01 IRH 501 A 1 HETATM 2 O O25 IRH . . . B 2 3.834 30.773 29.112 1 18.36 ? O25 IRH 501 A 1 HETATM 3 C C16 IRH . . . B 2 4.056 29.489 28.717 1 20.88 ? C16 IRH 501 A 1 HETATM 4 C C15 IRH . . . B 2 4.39 29.18 27.399 1 25.23 ? C15 IRH 501 A 1 HETATM 5 C C17 IRH . . . B 2 4.017 28.502 29.696 1 24.86 ? C17 IRH 501 A 1 HETATM 6 O O24 IRH . . . B 2 3.703 28.887 30.964 1 29.64 ? O24 IRH 501 A 1 HETATM 7 C C18 IRH . . . B 2 4.273 27.174 29.363 1 28.67 ? C18 IRH 501 A 1 HETATM 8 C C19 IRH . . . B 2 4.588 26.853 28.039 1 28.34 ? C19 IRH 501 A 1 HETATM 9 C C14 IRH . . . B 2 4.648 27.847 27.041 1 26.95 ? C14 IRH 501 A 1 HETATM 10 C C11 IRH . . . B 2 4.977 27.452 25.737 1 26.26 ? C11 IRH 501 A 1 HETATM 11 O O12 IRH . . . B 2 5.869 26.41 25.668 1 26.57 ? O12 IRH 501 A 1 HETATM 12 C C4 IRH . . . B 2 6.339 25.904 24.49 1 23.87 ? C4 IRH 501 A 1 HETATM 13 C C5 IRH . . . B 2 7.305 24.904 24.541 1 23.37 ? C5 IRH 501 A 1 HETATM 14 C C6 IRH . . . B 2 7.812 24.358 23.371 1 22.58 ? C6 IRH 501 A 1 HETATM 15 O O29 IRH . . . B 2 8.765 23.383 23.413 1 24 ? O29 IRH 501 A 1 HETATM 16 C C1 IRH . . . B 2 7.337 24.822 22.151 1 21.88 ? C1 IRH 501 A 1 HETATM 17 C C2 IRH . . . B 2 6.372 25.821 22.111 1 21.5 ? C2 IRH 501 A 1 HETATM 18 O O30 IRH . . . B 2 5.914 26.247 20.924 1 21.03 ? O30 IRH 501 A 1 HETATM 19 C C3 IRH . . . B 2 5.837 26.385 23.276 1 22.14 ? C3 IRH 501 A 1 HETATM 20 C C9 IRH . . . B 2 4.88 27.408 23.283 1 24.35 ? C9 IRH 501 A 1 HETATM 21 O O13 IRH . . . B 2 4.458 27.881 22.229 1 24.65 ? O13 IRH 501 A 1 HETATM 22 C C10 IRH . . . B 2 4.493 27.948 24.516 1 24.78 ? C10 IRH 501 A 1 HETATM 23 O O27 IRH . . . B 2 3.618 28.985 24.514 1 27.73 ? O27 IRH 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #