data_6M8D # _model_server_result.job_id '_pA1yGsowlN2B0i2zqBqzA' _model_server_result.datetime_utc '2024-11-27 05:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M8D # _exptl.entry_id 6M8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.263 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-4H-1-benzopyran-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M8D _cell.length_a 77.971 _cell.length_b 77.971 _cell.length_c 85.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H12 O6' _chem_comp.formula_weight 300.263 _chem_comp.id J8D _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-4H-1-benzopyran-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diosmetin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C4 J8D sing 173 n n O3 C7 J8D doub 174 n n C4 C3 J8D doub 175 n y C4 C5 J8D sing 176 n y C3 C2 J8D sing 177 n y C7 C5 J8D sing 178 n n C7 C8 J8D sing 179 n n C5 C6 J8D doub 180 n y C2 O1 J8D sing 181 n n C2 C1 J8D doub 182 n y C8 C9 J8D doub 183 n n C6 C1 J8D sing 184 n y C6 O4 J8D sing 185 n n C9 O4 J8D sing 186 n n C9 C10 J8D sing 187 n n C10 C15 J8D doub 188 n y C10 C11 J8D sing 189 n y C15 C14 J8D sing 190 n y C11 C12 J8D doub 191 n y C14 C13 J8D doub 192 n y C12 C13 J8D sing 193 n y C12 O5 J8D sing 194 n n C13 O6 J8D sing 195 n n O6 C01 J8D sing 196 n n C01 H1 J8D sing 197 n n C01 H2 J8D sing 198 n n C01 H3 J8D sing 199 n n C11 H4 J8D sing 200 n n O5 H5 J8D sing 201 n n C14 H6 J8D sing 202 n n C15 H7 J8D sing 203 n n C1 H8 J8D sing 204 n n O1 H9 J8D sing 205 n n C3 H10 J8D sing 206 n n O2 H11 J8D sing 207 n n C8 H12 J8D sing 208 n n # _atom_sites.entry_id 6M8D _atom_sites.fract_transf_matrix[1][1] 0.012825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J8D A 1 501 501 J8D Dio . C 3 HOH A 1 601 116 HOH HOH . C 3 HOH A 2 602 19 HOH HOH . C 3 HOH A 3 603 52 HOH HOH . C 3 HOH A 4 604 64 HOH HOH . C 3 HOH A 5 605 13 HOH HOH . C 3 HOH A 6 606 96 HOH HOH . C 3 HOH A 7 607 31 HOH HOH . C 3 HOH A 8 608 98 HOH HOH . C 3 HOH A 9 609 46 HOH HOH . C 3 HOH A 10 610 114 HOH HOH . C 3 HOH A 11 611 20 HOH HOH . C 3 HOH A 12 612 85 HOH HOH . C 3 HOH A 13 613 48 HOH HOH . C 3 HOH A 14 614 132 HOH HOH . C 3 HOH A 15 615 24 HOH HOH . C 3 HOH A 16 616 54 HOH HOH . C 3 HOH A 17 617 60 HOH HOH . C 3 HOH A 18 618 101 HOH HOH . C 3 HOH A 19 619 26 HOH HOH . C 3 HOH A 20 620 56 HOH HOH . C 3 HOH A 21 621 140 HOH HOH . C 3 HOH A 22 622 36 HOH HOH . C 3 HOH A 23 623 51 HOH HOH . C 3 HOH A 24 624 82 HOH HOH . C 3 HOH A 25 625 71 HOH HOH . C 3 HOH A 26 626 42 HOH HOH . C 3 HOH A 27 627 110 HOH HOH . C 3 HOH A 28 628 103 HOH HOH . C 3 HOH A 29 629 69 HOH HOH . C 3 HOH A 30 630 9 HOH HOH . C 3 HOH A 31 631 16 HOH HOH . C 3 HOH A 32 632 28 HOH HOH . C 3 HOH A 33 633 32 HOH HOH . C 3 HOH A 34 634 119 HOH HOH . C 3 HOH A 35 635 99 HOH HOH . C 3 HOH A 36 636 10 HOH HOH . C 3 HOH A 37 637 76 HOH HOH . C 3 HOH A 38 638 7 HOH HOH . C 3 HOH A 39 639 100 HOH HOH . C 3 HOH A 40 640 57 HOH HOH . C 3 HOH A 41 641 25 HOH HOH . C 3 HOH A 42 642 94 HOH HOH . C 3 HOH A 43 643 68 HOH HOH . C 3 HOH A 44 644 73 HOH HOH . C 3 HOH A 45 645 4 HOH HOH . C 3 HOH A 46 646 15 HOH HOH . C 3 HOH A 47 647 49 HOH HOH . C 3 HOH A 48 648 59 HOH HOH . C 3 HOH A 49 649 14 HOH HOH . C 3 HOH A 50 650 43 HOH HOH . C 3 HOH A 51 651 45 HOH HOH . C 3 HOH A 52 652 81 HOH HOH . C 3 HOH A 53 653 29 HOH HOH . C 3 HOH A 54 654 1 HOH HOH . C 3 HOH A 55 655 38 HOH HOH . C 3 HOH A 56 656 106 HOH HOH . C 3 HOH A 57 657 27 HOH HOH . C 3 HOH A 58 658 2 HOH HOH . C 3 HOH A 59 659 122 HOH HOH . C 3 HOH A 60 660 61 HOH HOH . C 3 HOH A 61 661 40 HOH HOH . C 3 HOH A 62 662 127 HOH HOH . C 3 HOH A 63 663 70 HOH HOH . C 3 HOH A 64 664 105 HOH HOH . C 3 HOH A 65 665 104 HOH HOH . C 3 HOH A 66 666 41 HOH HOH . C 3 HOH A 67 667 58 HOH HOH . C 3 HOH A 68 668 55 HOH HOH . C 3 HOH A 69 669 92 HOH HOH . C 3 HOH A 70 670 65 HOH HOH . C 3 HOH A 71 671 50 HOH HOH . C 3 HOH A 72 672 78 HOH HOH . C 3 HOH A 73 673 34 HOH HOH . C 3 HOH A 74 674 97 HOH HOH . C 3 HOH A 75 675 5 HOH HOH . C 3 HOH A 76 676 135 HOH HOH . C 3 HOH A 77 677 136 HOH HOH . C 3 HOH A 78 678 128 HOH HOH . C 3 HOH A 79 679 22 HOH HOH . C 3 HOH A 80 680 3 HOH HOH . C 3 HOH A 81 681 47 HOH HOH . C 3 HOH A 82 682 35 HOH HOH . C 3 HOH A 83 683 37 HOH HOH . C 3 HOH A 84 684 21 HOH HOH . C 3 HOH A 85 685 125 HOH HOH . C 3 HOH A 86 686 53 HOH HOH . C 3 HOH A 87 687 6 HOH HOH . C 3 HOH A 88 688 77 HOH HOH . C 3 HOH A 89 689 11 HOH HOH . C 3 HOH A 90 690 133 HOH HOH . C 3 HOH A 91 691 126 HOH HOH . C 3 HOH A 92 692 30 HOH HOH . C 3 HOH A 93 693 79 HOH HOH . C 3 HOH A 94 694 108 HOH HOH . C 3 HOH A 95 695 23 HOH HOH . C 3 HOH A 96 696 44 HOH HOH . C 3 HOH A 97 697 91 HOH HOH . C 3 HOH A 98 698 75 HOH HOH . C 3 HOH A 99 699 67 HOH HOH . C 3 HOH A 100 700 118 HOH HOH . C 3 HOH A 101 701 18 HOH HOH . C 3 HOH A 102 702 72 HOH HOH . C 3 HOH A 103 703 12 HOH HOH . C 3 HOH A 104 704 66 HOH HOH . C 3 HOH A 105 705 137 HOH HOH . C 3 HOH A 106 706 63 HOH HOH . C 3 HOH A 107 707 33 HOH HOH . C 3 HOH A 108 708 8 HOH HOH . C 3 HOH A 109 709 111 HOH HOH . C 3 HOH A 110 710 86 HOH HOH . C 3 HOH A 111 711 90 HOH HOH . C 3 HOH A 112 712 109 HOH HOH . C 3 HOH A 113 713 17 HOH HOH . C 3 HOH A 114 714 89 HOH HOH . C 3 HOH A 115 715 95 HOH HOH . C 3 HOH A 116 716 131 HOH HOH . C 3 HOH A 117 717 87 HOH HOH . C 3 HOH A 118 718 102 HOH HOH . C 3 HOH A 119 719 123 HOH HOH . C 3 HOH A 120 720 113 HOH HOH . C 3 HOH A 121 721 88 HOH HOH . C 3 HOH A 122 722 129 HOH HOH . C 3 HOH A 123 723 80 HOH HOH . C 3 HOH A 124 724 115 HOH HOH . C 3 HOH A 125 725 84 HOH HOH . C 3 HOH A 126 726 107 HOH HOH . C 3 HOH A 127 727 39 HOH HOH . C 3 HOH A 128 728 139 HOH HOH . C 3 HOH A 129 729 124 HOH HOH . C 3 HOH A 130 730 74 HOH HOH . C 3 HOH A 131 731 117 HOH HOH . C 3 HOH A 132 732 62 HOH HOH . C 3 HOH A 133 733 112 HOH HOH . C 3 HOH A 134 734 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 J8D . . . B 2 3.503 31.515 30.483 1 33.01 ? C01 J8D 501 A 1 HETATM 2 O O6 J8D . . . B 2 3.655 30.089 30.36 1 33.34 ? O6 J8D 501 A 1 HETATM 3 C C13 J8D . . . B 2 3.901 29.567 29.111 1 31.92 ? C13 J8D 501 A 1 HETATM 4 C C12 J8D . . . B 2 4.42 28.27 29.087 1 32.3 ? C12 J8D 501 A 1 HETATM 5 C C11 J8D . . . B 2 4.71 27.628 27.888 1 30.72 ? C11 J8D 501 A 1 HETATM 6 O O5 J8D . . . B 2 4.642 27.656 30.279 1 38.39 ? O5 J8D 501 A 1 HETATM 7 C C14 J8D . . . B 2 3.658 30.216 27.89 1 31.05 ? C14 J8D 501 A 1 HETATM 8 C C15 J8D . . . B 2 3.947 29.569 26.681 1 29.49 ? C15 J8D 501 A 1 HETATM 9 C C10 J8D . . . B 2 4.469 28.262 26.661 1 28.82 ? C10 J8D 501 A 1 HETATM 10 C C9 J8D . . . B 2 4.78 27.6 25.463 1 27.28 ? C9 J8D 501 A 1 HETATM 11 O O4 J8D . . . B 2 5.776 26.659 25.563 1 28.74 ? O4 J8D 501 A 1 HETATM 12 C C6 J8D . . . B 2 6.214 25.958 24.465 1 24.2 ? C6 J8D 501 A 1 HETATM 13 C C1 J8D . . . B 2 7.235 25.022 24.615 1 24.48 ? C1 J8D 501 A 1 HETATM 14 C C2 J8D . . . B 2 7.705 24.314 23.514 1 24.74 ? C2 J8D 501 A 1 HETATM 15 O O1 J8D . . . B 2 8.699 23.395 23.639 1 28.02 ? O1 J8D 501 A 1 HETATM 16 C C3 J8D . . . B 2 7.145 24.549 22.268 1 23.66 ? C3 J8D 501 A 1 HETATM 17 C C4 J8D . . . B 2 6.13 25.481 22.127 1 23.22 ? C4 J8D 501 A 1 HETATM 18 O O2 J8D . . . B 2 5.595 25.705 20.905 1 24.52 ? O2 J8D 501 A 1 HETATM 19 C C5 J8D . . . B 2 5.631 26.204 23.22 1 23.75 ? C5 J8D 501 A 1 HETATM 20 C C7 J8D . . . B 2 4.599 27.156 23.106 1 24.33 ? C7 J8D 501 A 1 HETATM 21 O O3 J8D . . . B 2 4.013 27.351 22.042 1 22.33 ? O3 J8D 501 A 1 HETATM 22 C C8 J8D . . . B 2 4.167 27.848 24.232 1 25.08 ? C8 J8D 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #