data_6M8E # _model_server_result.job_id VZUf9y5oqfurO-EOuwZHZA _model_server_result.datetime_utc '2024-11-13 11:07:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M8E # _exptl.entry_id 6M8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.262 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxyphenyl)-3,5-dihydroxy-7-methoxy-4H-1-benzopyran-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M8E _cell.length_a 78.152 _cell.length_b 78.152 _cell.length_c 85.562 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H12 O7' _chem_comp.formula_weight 316.262 _chem_comp.id J8G _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxyphenyl)-3,5-dihydroxy-7-methoxy-4H-1-benzopyran-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms rhamnetin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C2 J8G sing 173 n n C1 C2 J8G doub 174 n y C1 C6 J8G sing 175 n y C2 C3 J8G sing 176 n y O13 C9 J8G doub 177 n n C01 O29 J8G sing 178 n n C3 C9 J8G sing 179 n n C3 C4 J8G doub 180 n y C6 O29 J8G sing 181 n n C6 C5 J8G doub 182 n y C9 C10 J8G sing 183 n n C4 C5 J8G sing 184 n y C4 O12 J8G sing 185 n n C10 O27 J8G sing 186 n n C10 C11 J8G doub 187 n n O12 C11 J8G sing 188 n n C11 C14 J8G sing 189 n n C14 C15 J8G doub 190 n y C14 C19 J8G sing 191 n y C15 C16 J8G sing 192 n y C19 C18 J8G doub 193 n y C16 C17 J8G doub 194 n y C18 C17 J8G sing 195 n y C18 O23 J8G sing 196 n n C17 O24 J8G sing 197 n n C1 H1 J8G sing 198 n n C5 H2 J8G sing 199 n n C19 H3 J8G sing 200 n n O23 H4 J8G sing 201 n n O24 H5 J8G sing 202 n n C16 H6 J8G sing 203 n n C15 H7 J8G sing 204 n n C01 H8 J8G sing 205 n n C01 H9 J8G sing 206 n n C01 H10 J8G sing 207 n n O30 H11 J8G sing 208 n n O27 H12 J8G sing 209 n n # _atom_sites.entry_id 6M8E _atom_sites.fract_transf_matrix[1][1] 0.012796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J8G A 1 501 501 J8G RHA . C 3 HOH A 1 601 52 HOH HOH . C 3 HOH A 2 602 58 HOH HOH . C 3 HOH A 3 603 20 HOH HOH . C 3 HOH A 4 604 61 HOH HOH . C 3 HOH A 5 605 25 HOH HOH . C 3 HOH A 6 606 29 HOH HOH . C 3 HOH A 7 607 81 HOH HOH . C 3 HOH A 8 608 137 HOH HOH . C 3 HOH A 9 609 27 HOH HOH . C 3 HOH A 10 610 45 HOH HOH . C 3 HOH A 11 611 64 HOH HOH . C 3 HOH A 12 612 23 HOH HOH . C 3 HOH A 13 613 33 HOH HOH . C 3 HOH A 14 614 21 HOH HOH . C 3 HOH A 15 615 54 HOH HOH . C 3 HOH A 16 616 108 HOH HOH . C 3 HOH A 17 617 125 HOH HOH . C 3 HOH A 18 618 96 HOH HOH . C 3 HOH A 19 619 38 HOH HOH . C 3 HOH A 20 620 163 HOH HOH . C 3 HOH A 21 621 40 HOH HOH . C 3 HOH A 22 622 210 HOH HOH . C 3 HOH A 23 623 9 HOH HOH . C 3 HOH A 24 624 7 HOH HOH . C 3 HOH A 25 625 13 HOH HOH . C 3 HOH A 26 626 97 HOH HOH . C 3 HOH A 27 627 103 HOH HOH . C 3 HOH A 28 628 59 HOH HOH . C 3 HOH A 29 629 10 HOH HOH . C 3 HOH A 30 630 121 HOH HOH . C 3 HOH A 31 631 14 HOH HOH . C 3 HOH A 32 632 104 HOH HOH . C 3 HOH A 33 633 89 HOH HOH . C 3 HOH A 34 634 113 HOH HOH . C 3 HOH A 35 635 15 HOH HOH . C 3 HOH A 36 636 100 HOH HOH . C 3 HOH A 37 637 26 HOH HOH . C 3 HOH A 38 638 46 HOH HOH . C 3 HOH A 39 639 67 HOH HOH . C 3 HOH A 40 640 128 HOH HOH . C 3 HOH A 41 641 90 HOH HOH . C 3 HOH A 42 642 55 HOH HOH . C 3 HOH A 43 643 16 HOH HOH . C 3 HOH A 44 644 99 HOH HOH . C 3 HOH A 45 645 57 HOH HOH . C 3 HOH A 46 646 177 HOH HOH . C 3 HOH A 47 647 66 HOH HOH . C 3 HOH A 48 648 72 HOH HOH . C 3 HOH A 49 649 4 HOH HOH . C 3 HOH A 50 650 22 HOH HOH . C 3 HOH A 51 651 28 HOH HOH . C 3 HOH A 52 652 185 HOH HOH . C 3 HOH A 53 653 85 HOH HOH . C 3 HOH A 54 654 39 HOH HOH . C 3 HOH A 55 655 138 HOH HOH . C 3 HOH A 56 656 37 HOH HOH . C 3 HOH A 57 657 32 HOH HOH . C 3 HOH A 58 658 6 HOH HOH . C 3 HOH A 59 659 65 HOH HOH . C 3 HOH A 60 660 31 HOH HOH . C 3 HOH A 61 661 88 HOH HOH . C 3 HOH A 62 662 179 HOH HOH . C 3 HOH A 63 663 2 HOH HOH . C 3 HOH A 64 664 11 HOH HOH . C 3 HOH A 65 665 110 HOH HOH . C 3 HOH A 66 666 5 HOH HOH . C 3 HOH A 67 667 60 HOH HOH . C 3 HOH A 68 668 3 HOH HOH . C 3 HOH A 69 669 63 HOH HOH . C 3 HOH A 70 670 53 HOH HOH . C 3 HOH A 71 671 151 HOH HOH . C 3 HOH A 72 672 201 HOH HOH . C 3 HOH A 73 673 86 HOH HOH . C 3 HOH A 74 674 8 HOH HOH . C 3 HOH A 75 675 12 HOH HOH . C 3 HOH A 76 676 56 HOH HOH . C 3 HOH A 77 677 84 HOH HOH . C 3 HOH A 78 678 24 HOH HOH . C 3 HOH A 79 679 118 HOH HOH . C 3 HOH A 80 680 19 HOH HOH . C 3 HOH A 81 681 123 HOH HOH . C 3 HOH A 82 682 44 HOH HOH . C 3 HOH A 83 683 94 HOH HOH . C 3 HOH A 84 684 35 HOH HOH . C 3 HOH A 85 685 148 HOH HOH . C 3 HOH A 86 686 36 HOH HOH . C 3 HOH A 87 687 115 HOH HOH . C 3 HOH A 88 688 18 HOH HOH . C 3 HOH A 89 689 117 HOH HOH . C 3 HOH A 90 690 183 HOH HOH . C 3 HOH A 91 691 48 HOH HOH . C 3 HOH A 92 692 209 HOH HOH . C 3 HOH A 93 693 34 HOH HOH . C 3 HOH A 94 694 188 HOH HOH . C 3 HOH A 95 695 133 HOH HOH . C 3 HOH A 96 696 166 HOH HOH . C 3 HOH A 97 697 129 HOH HOH . C 3 HOH A 98 698 107 HOH HOH . C 3 HOH A 99 699 30 HOH HOH . C 3 HOH A 100 700 206 HOH HOH . C 3 HOH A 101 701 208 HOH HOH . C 3 HOH A 102 702 41 HOH HOH . C 3 HOH A 103 703 98 HOH HOH . C 3 HOH A 104 704 76 HOH HOH . C 3 HOH A 105 705 114 HOH HOH . C 3 HOH A 106 706 42 HOH HOH . C 3 HOH A 107 707 195 HOH HOH . C 3 HOH A 108 708 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J8G . . . B 2 7.308 24.706 22.253 1 35.99 ? C1 J8G 501 A 1 HETATM 2 C C2 J8G . . . B 2 6.318 25.696 22.257 1 36.03 ? C2 J8G 501 A 1 HETATM 3 C C3 J8G . . . B 2 5.863 26.285 23.445 1 37.48 ? C3 J8G 501 A 1 HETATM 4 C C4 J8G . . . B 2 6.455 25.845 24.637 1 38.19 ? C4 J8G 501 A 1 HETATM 5 C C5 J8G . . . B 2 7.444 24.858 24.64 1 39.54 ? C5 J8G 501 A 1 HETATM 6 C C6 J8G . . . B 2 7.883 24.282 23.449 1 38.37 ? C6 J8G 501 A 1 HETATM 7 C C19 J8G . . . B 2 4.756 26.987 28.262 1 54.89 ? C19 J8G 501 A 1 HETATM 8 C C18 J8G . . . B 2 4.525 27.472 29.548 1 57.14 ? C18 J8G 501 A 1 HETATM 9 O O23 J8G . . . B 2 4.419 26.634 30.611 1 62.21 ? O23 J8G 501 A 1 HETATM 10 C C17 J8G . . . B 2 4.394 28.846 29.782 1 57.73 ? C17 J8G 501 A 1 HETATM 11 O O24 J8G . . . B 2 4.167 29.26 31.063 1 58.25 ? O24 J8G 501 A 1 HETATM 12 C C16 J8G . . . B 2 4.495 29.744 28.723 1 57.62 ? C16 J8G 501 A 1 HETATM 13 C C15 J8G . . . B 2 4.73 29.262 27.433 1 56.62 ? C15 J8G 501 A 1 HETATM 14 C C14 J8G . . . B 2 4.847 27.883 27.189 1 52.48 ? C14 J8G 501 A 1 HETATM 15 C C11 J8G . . . B 2 5.102 27.392 25.905 1 47.85 ? C11 J8G 501 A 1 HETATM 16 O O12 J8G . . . B 2 6.057 26.402 25.831 1 48.75 ? O12 J8G 501 A 1 HETATM 17 O O29 J8G . . . B 2 8.862 23.318 23.463 1 40.24 ? O29 J8G 501 A 1 HETATM 18 C C01 J8G . . . B 2 9.328 22.395 22.811 1 9.46 ? C01 J8G 501 A 1 HETATM 19 O O30 J8G . . . B 2 5.751 26.12 21.096 1 37.44 ? O30 J8G 501 A 1 HETATM 20 C C9 J8G . . . B 2 4.868 27.285 23.477 1 40.28 ? C9 J8G 501 A 1 HETATM 21 O O13 J8G . . . B 2 4.309 27.692 22.456 1 37.65 ? O13 J8G 501 A 1 HETATM 22 C C10 J8G . . . B 2 4.517 27.823 24.709 1 43.78 ? C10 J8G 501 A 1 HETATM 23 O O27 J8G . . . B 2 3.559 28.791 24.728 1 49.03 ? O27 J8G 501 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #