data_6M8F # _model_server_result.job_id DqqazNOF_n-LS4OnQVOjGA _model_server_result.datetime_utc '2024-11-25 14:59:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6M8F # _exptl.entry_id 6M8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M8F _cell.length_a 90.78 _cell.length_b 90.78 _cell.length_c 45.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC C 1 SUC 2 n B FRU 2 B 2 FRU C 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . B GLC 1 1_555 B O2 FRU . B FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 D FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 D FE HEM . A HEM 202 1_555 G O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 407 n n S O2 SO4 doub 408 n n S O3 SO4 sing 409 n n S O4 SO4 sing 410 n n # _atom_sites.entry_id 6M8F _atom_sites.fract_transf_matrix[1][1] 0.011016 _atom_sites.fract_transf_matrix[1][2] 0.00636 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 201 159 SO4 SO4 . D 4 HEM A 1 202 155 HEM HEM . E 3 SO4 A 1 203 1 SO4 SO4 . F 3 SO4 A 1 204 2 SO4 SO4 . G 5 HOH A 1 301 165 HOH HOH . G 5 HOH A 2 302 98 HOH HOH . G 5 HOH A 3 303 179 HOH HOH . G 5 HOH A 4 304 142 HOH HOH . G 5 HOH A 5 305 118 HOH HOH . G 5 HOH A 6 306 102 HOH HOH . G 5 HOH A 7 307 174 HOH HOH . G 5 HOH A 8 308 175 HOH HOH . G 5 HOH A 9 309 256 HOH HOH . G 5 HOH A 10 310 187 HOH HOH . G 5 HOH A 11 311 152 HOH HOH . G 5 HOH A 12 312 81 HOH HOH . G 5 HOH A 13 313 111 HOH HOH . G 5 HOH A 14 314 129 HOH HOH . G 5 HOH A 15 315 74 HOH HOH . G 5 HOH A 16 316 36 HOH HOH . G 5 HOH A 17 317 154 HOH HOH . G 5 HOH A 18 318 92 HOH HOH . G 5 HOH A 19 319 257 HOH HOH . G 5 HOH A 20 320 114 HOH HOH . G 5 HOH A 21 321 236 HOH HOH . G 5 HOH A 22 322 181 HOH HOH . G 5 HOH A 23 323 69 HOH HOH . G 5 HOH A 24 324 76 HOH HOH . G 5 HOH A 25 325 93 HOH HOH . G 5 HOH A 26 326 26 HOH HOH . G 5 HOH A 27 327 124 HOH HOH . G 5 HOH A 28 328 75 HOH HOH . G 5 HOH A 29 329 198 HOH HOH . G 5 HOH A 30 330 97 HOH HOH . G 5 HOH A 31 331 4 HOH HOH . G 5 HOH A 32 332 131 HOH HOH . G 5 HOH A 33 333 91 HOH HOH . G 5 HOH A 34 334 251 HOH HOH . G 5 HOH A 35 335 186 HOH HOH . G 5 HOH A 36 336 40 HOH HOH . G 5 HOH A 37 337 21 HOH HOH . G 5 HOH A 38 338 45 HOH HOH . G 5 HOH A 39 339 29 HOH HOH . G 5 HOH A 40 340 15 HOH HOH . G 5 HOH A 41 341 116 HOH HOH . G 5 HOH A 42 342 77 HOH HOH . G 5 HOH A 43 343 79 HOH HOH . G 5 HOH A 44 344 57 HOH HOH . G 5 HOH A 45 345 155 HOH HOH . G 5 HOH A 46 346 18 HOH HOH . G 5 HOH A 47 347 32 HOH HOH . G 5 HOH A 48 348 163 HOH HOH . G 5 HOH A 49 349 240 HOH HOH . G 5 HOH A 50 350 218 HOH HOH . G 5 HOH A 51 351 41 HOH HOH . G 5 HOH A 52 352 246 HOH HOH . G 5 HOH A 53 353 43 HOH HOH . G 5 HOH A 54 354 46 HOH HOH . G 5 HOH A 55 355 90 HOH HOH . G 5 HOH A 56 356 51 HOH HOH . G 5 HOH A 57 357 137 HOH HOH . G 5 HOH A 58 358 8 HOH HOH . G 5 HOH A 59 359 19 HOH HOH . G 5 HOH A 60 360 1 HOH HOH . G 5 HOH A 61 361 11 HOH HOH . G 5 HOH A 62 362 20 HOH HOH . G 5 HOH A 63 363 67 HOH HOH . G 5 HOH A 64 364 33 HOH HOH . G 5 HOH A 65 365 192 HOH HOH . G 5 HOH A 66 366 6 HOH HOH . G 5 HOH A 67 367 133 HOH HOH . G 5 HOH A 68 368 31 HOH HOH . G 5 HOH A 69 369 48 HOH HOH . G 5 HOH A 70 370 103 HOH HOH . G 5 HOH A 71 371 65 HOH HOH . G 5 HOH A 72 372 7 HOH HOH . G 5 HOH A 73 373 5 HOH HOH . G 5 HOH A 74 374 2 HOH HOH . G 5 HOH A 75 375 37 HOH HOH . G 5 HOH A 76 376 22 HOH HOH . G 5 HOH A 77 377 54 HOH HOH . G 5 HOH A 78 378 86 HOH HOH . G 5 HOH A 79 379 60 HOH HOH . G 5 HOH A 80 380 139 HOH HOH . G 5 HOH A 81 381 55 HOH HOH . G 5 HOH A 82 382 71 HOH HOH . G 5 HOH A 83 383 144 HOH HOH . G 5 HOH A 84 384 39 HOH HOH . G 5 HOH A 85 385 127 HOH HOH . G 5 HOH A 86 386 184 HOH HOH . G 5 HOH A 87 387 53 HOH HOH . G 5 HOH A 88 388 85 HOH HOH . G 5 HOH A 89 389 151 HOH HOH . G 5 HOH A 90 390 206 HOH HOH . G 5 HOH A 91 391 101 HOH HOH . G 5 HOH A 92 392 231 HOH HOH . G 5 HOH A 93 393 58 HOH HOH . G 5 HOH A 94 394 12 HOH HOH . G 5 HOH A 95 395 158 HOH HOH . G 5 HOH A 96 396 100 HOH HOH . G 5 HOH A 97 397 113 HOH HOH . G 5 HOH A 98 398 159 HOH HOH . G 5 HOH A 99 399 66 HOH HOH . G 5 HOH A 100 400 125 HOH HOH . G 5 HOH A 101 401 14 HOH HOH . G 5 HOH A 102 402 24 HOH HOH . G 5 HOH A 103 403 132 HOH HOH . G 5 HOH A 104 404 225 HOH HOH . G 5 HOH A 105 405 89 HOH HOH . G 5 HOH A 106 406 255 HOH HOH . G 5 HOH A 107 407 3 HOH HOH . G 5 HOH A 108 408 188 HOH HOH . G 5 HOH A 109 409 112 HOH HOH . G 5 HOH A 110 410 25 HOH HOH . G 5 HOH A 111 411 42 HOH HOH . G 5 HOH A 112 412 172 HOH HOH . G 5 HOH A 113 413 83 HOH HOH . G 5 HOH A 114 414 195 HOH HOH . G 5 HOH A 115 415 99 HOH HOH . G 5 HOH A 116 416 84 HOH HOH . G 5 HOH A 117 417 135 HOH HOH . G 5 HOH A 118 418 44 HOH HOH . G 5 HOH A 119 419 205 HOH HOH . G 5 HOH A 120 420 52 HOH HOH . G 5 HOH A 121 421 35 HOH HOH . G 5 HOH A 122 422 73 HOH HOH . G 5 HOH A 123 423 34 HOH HOH . G 5 HOH A 124 424 62 HOH HOH . G 5 HOH A 125 425 50 HOH HOH . G 5 HOH A 126 426 180 HOH HOH . G 5 HOH A 127 427 68 HOH HOH . G 5 HOH A 128 428 87 HOH HOH . G 5 HOH A 129 429 59 HOH HOH . G 5 HOH A 130 430 238 HOH HOH . G 5 HOH A 131 431 252 HOH HOH . G 5 HOH A 132 432 220 HOH HOH . G 5 HOH A 133 433 204 HOH HOH . G 5 HOH A 134 434 123 HOH HOH . G 5 HOH A 135 435 161 HOH HOH . G 5 HOH A 136 436 190 HOH HOH . G 5 HOH A 137 437 10 HOH HOH . G 5 HOH A 138 438 221 HOH HOH . G 5 HOH A 139 439 226 HOH HOH . G 5 HOH A 140 440 177 HOH HOH . G 5 HOH A 141 441 223 HOH HOH . G 5 HOH A 142 442 183 HOH HOH . G 5 HOH A 143 443 17 HOH HOH . G 5 HOH A 144 444 27 HOH HOH . G 5 HOH A 145 445 185 HOH HOH . G 5 HOH A 146 446 234 HOH HOH . G 5 HOH A 147 447 241 HOH HOH . G 5 HOH A 148 448 217 HOH HOH . G 5 HOH A 149 449 107 HOH HOH . G 5 HOH A 150 450 104 HOH HOH . G 5 HOH A 151 451 134 HOH HOH . G 5 HOH A 152 452 13 HOH HOH . G 5 HOH A 153 453 143 HOH HOH . G 5 HOH A 154 454 227 HOH HOH . G 5 HOH A 155 455 250 HOH HOH . G 5 HOH A 156 456 122 HOH HOH . G 5 HOH A 157 457 64 HOH HOH . G 5 HOH A 158 458 237 HOH HOH . G 5 HOH A 159 459 56 HOH HOH . G 5 HOH A 160 460 167 HOH HOH . G 5 HOH A 161 461 168 HOH HOH . G 5 HOH A 162 462 202 HOH HOH . G 5 HOH A 163 463 191 HOH HOH . G 5 HOH A 164 464 9 HOH HOH . G 5 HOH A 165 465 16 HOH HOH . G 5 HOH A 166 466 30 HOH HOH . G 5 HOH A 167 467 88 HOH HOH . G 5 HOH A 168 468 128 HOH HOH . G 5 HOH A 169 469 208 HOH HOH . G 5 HOH A 170 470 119 HOH HOH . G 5 HOH A 171 471 229 HOH HOH . G 5 HOH A 172 472 150 HOH HOH . G 5 HOH A 173 473 193 HOH HOH . G 5 HOH A 174 474 244 HOH HOH . G 5 HOH A 175 475 61 HOH HOH . G 5 HOH A 176 476 157 HOH HOH . G 5 HOH A 177 477 115 HOH HOH . G 5 HOH A 178 478 199 HOH HOH . G 5 HOH A 179 479 47 HOH HOH . G 5 HOH A 180 480 160 HOH HOH . G 5 HOH A 181 481 72 HOH HOH . G 5 HOH A 182 482 23 HOH HOH . G 5 HOH A 183 483 149 HOH HOH . G 5 HOH A 184 484 239 HOH HOH . G 5 HOH A 185 485 121 HOH HOH . G 5 HOH A 186 486 216 HOH HOH . G 5 HOH A 187 487 153 HOH HOH . G 5 HOH A 188 488 106 HOH HOH . G 5 HOH A 189 489 138 HOH HOH . G 5 HOH A 190 490 228 HOH HOH . G 5 HOH A 191 491 207 HOH HOH . G 5 HOH A 192 492 254 HOH HOH . G 5 HOH A 193 493 70 HOH HOH . G 5 HOH A 194 494 164 HOH HOH . G 5 HOH A 195 495 110 HOH HOH . G 5 HOH A 196 496 200 HOH HOH . G 5 HOH A 197 497 49 HOH HOH . G 5 HOH A 198 498 80 HOH HOH . G 5 HOH A 199 499 210 HOH HOH . G 5 HOH A 200 500 156 HOH HOH . G 5 HOH A 201 501 245 HOH HOH . G 5 HOH A 202 502 197 HOH HOH . G 5 HOH A 203 503 130 HOH HOH . G 5 HOH A 204 504 222 HOH HOH . G 5 HOH A 205 505 194 HOH HOH . G 5 HOH A 206 506 147 HOH HOH . G 5 HOH A 207 507 219 HOH HOH . G 5 HOH A 208 508 201 HOH HOH . G 5 HOH A 209 509 242 HOH HOH . G 5 HOH A 210 510 253 HOH HOH . G 5 HOH A 211 511 209 HOH HOH . G 5 HOH A 212 512 109 HOH HOH . G 5 HOH A 213 513 105 HOH HOH . G 5 HOH A 214 514 196 HOH HOH . G 5 HOH A 215 515 95 HOH HOH . G 5 HOH A 216 516 182 HOH HOH . G 5 HOH A 217 517 141 HOH HOH . G 5 HOH A 218 518 78 HOH HOH . G 5 HOH A 219 519 117 HOH HOH . G 5 HOH A 220 520 38 HOH HOH . G 5 HOH A 221 521 214 HOH HOH . G 5 HOH A 222 522 213 HOH HOH . G 5 HOH A 223 523 96 HOH HOH . G 5 HOH A 224 524 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 26.529 30.823 -2.67 1 49.36 ? S SO4 201 A 1 HETATM 2 O O1 SO4 . . . C 3 25.98 31.894 -3.504 1 52.09 ? O1 SO4 201 A 1 HETATM 3 O O2 SO4 . . . C 3 26.263 29.53 -3.291 1 45.2 ? O2 SO4 201 A 1 HETATM 4 O O3 SO4 . . . C 3 27.973 31.029 -2.531 1 52.19 ? O3 SO4 201 A 1 HETATM 5 O O4 SO4 . . . C 3 25.916 30.881 -1.343 1 48.9 ? O4 SO4 201 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #