data_6M8T # _model_server_result.job_id VaXrM7aGibDITCVUsxpTew _model_server_result.datetime_utc '2024-11-15 15:59:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6M8T # _exptl.entry_id 6M8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M8T _cell.length_a 98.56 _cell.length_b 98.56 _cell.length_c 98.56 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 98.56 98.56 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 98.56 0 98.56 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 98.56 98.56 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 98.56 98.56 7 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 98.56 98.56 0 8 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 98.56 0 98.56 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 98.56 0 98.56 11 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 98.56 98.56 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 98.56 98.56 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6M8T _atom_sites.fract_transf_matrix[1][1] 0.010146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 1 FMN FMN . C 3 PO4 A 1 202 1 PO4 PO4 . D 4 HOH A 1 301 168 HOH HOH . D 4 HOH A 2 302 101 HOH HOH . D 4 HOH A 3 303 112 HOH HOH . D 4 HOH A 4 304 186 HOH HOH . D 4 HOH A 5 305 145 HOH HOH . D 4 HOH A 6 306 183 HOH HOH . D 4 HOH A 7 307 146 HOH HOH . D 4 HOH A 8 308 135 HOH HOH . D 4 HOH A 9 309 77 HOH HOH . D 4 HOH A 10 310 147 HOH HOH . D 4 HOH A 11 311 167 HOH HOH . D 4 HOH A 12 312 81 HOH HOH . D 4 HOH A 13 313 10 HOH HOH . D 4 HOH A 14 314 105 HOH HOH . D 4 HOH A 15 315 148 HOH HOH . D 4 HOH A 16 316 46 HOH HOH . D 4 HOH A 17 317 176 HOH HOH . D 4 HOH A 18 318 117 HOH HOH . D 4 HOH A 19 319 18 HOH HOH . D 4 HOH A 20 320 142 HOH HOH . D 4 HOH A 21 321 47 HOH HOH . D 4 HOH A 22 322 126 HOH HOH . D 4 HOH A 23 323 72 HOH HOH . D 4 HOH A 24 324 21 HOH HOH . D 4 HOH A 25 325 52 HOH HOH . D 4 HOH A 26 326 120 HOH HOH . D 4 HOH A 27 327 97 HOH HOH . D 4 HOH A 28 328 134 HOH HOH . D 4 HOH A 29 329 108 HOH HOH . D 4 HOH A 30 330 107 HOH HOH . D 4 HOH A 31 331 25 HOH HOH . D 4 HOH A 32 332 128 HOH HOH . D 4 HOH A 33 333 15 HOH HOH . D 4 HOH A 34 334 65 HOH HOH . D 4 HOH A 35 335 199 HOH HOH . D 4 HOH A 36 336 3 HOH HOH . D 4 HOH A 37 337 130 HOH HOH . D 4 HOH A 38 338 13 HOH HOH . D 4 HOH A 39 339 8 HOH HOH . D 4 HOH A 40 340 33 HOH HOH . D 4 HOH A 41 341 94 HOH HOH . D 4 HOH A 42 342 195 HOH HOH . D 4 HOH A 43 343 113 HOH HOH . D 4 HOH A 44 344 5 HOH HOH . D 4 HOH A 45 345 93 HOH HOH . D 4 HOH A 46 346 1 HOH HOH . D 4 HOH A 47 347 17 HOH HOH . D 4 HOH A 48 348 7 HOH HOH . D 4 HOH A 49 349 151 HOH HOH . D 4 HOH A 50 350 53 HOH HOH . D 4 HOH A 51 351 118 HOH HOH . D 4 HOH A 52 352 156 HOH HOH . D 4 HOH A 53 353 63 HOH HOH . D 4 HOH A 54 354 2 HOH HOH . D 4 HOH A 55 355 54 HOH HOH . D 4 HOH A 56 356 200 HOH HOH . D 4 HOH A 57 357 24 HOH HOH . D 4 HOH A 58 358 184 HOH HOH . D 4 HOH A 59 359 48 HOH HOH . D 4 HOH A 60 360 26 HOH HOH . D 4 HOH A 61 361 157 HOH HOH . D 4 HOH A 62 362 91 HOH HOH . D 4 HOH A 63 363 19 HOH HOH . D 4 HOH A 64 364 16 HOH HOH . D 4 HOH A 65 365 60 HOH HOH . D 4 HOH A 66 366 132 HOH HOH . D 4 HOH A 67 367 196 HOH HOH . D 4 HOH A 68 368 43 HOH HOH . D 4 HOH A 69 369 110 HOH HOH . D 4 HOH A 70 370 68 HOH HOH . D 4 HOH A 71 371 40 HOH HOH . D 4 HOH A 72 372 133 HOH HOH . D 4 HOH A 73 373 194 HOH HOH . D 4 HOH A 74 374 38 HOH HOH . D 4 HOH A 75 375 12 HOH HOH . D 4 HOH A 76 376 35 HOH HOH . D 4 HOH A 77 377 6 HOH HOH . D 4 HOH A 78 378 37 HOH HOH . D 4 HOH A 79 379 99 HOH HOH . D 4 HOH A 80 380 71 HOH HOH . D 4 HOH A 81 381 98 HOH HOH . D 4 HOH A 82 382 31 HOH HOH . D 4 HOH A 83 383 78 HOH HOH . D 4 HOH A 84 384 174 HOH HOH . D 4 HOH A 85 385 14 HOH HOH . D 4 HOH A 86 386 4 HOH HOH . D 4 HOH A 87 387 41 HOH HOH . D 4 HOH A 88 388 178 HOH HOH . D 4 HOH A 89 389 85 HOH HOH . D 4 HOH A 90 390 87 HOH HOH . D 4 HOH A 91 391 88 HOH HOH . D 4 HOH A 92 392 36 HOH HOH . D 4 HOH A 93 393 158 HOH HOH . D 4 HOH A 94 394 44 HOH HOH . D 4 HOH A 95 395 95 HOH HOH . D 4 HOH A 96 396 170 HOH HOH . D 4 HOH A 97 397 187 HOH HOH . D 4 HOH A 98 398 83 HOH HOH . D 4 HOH A 99 399 172 HOH HOH . D 4 HOH A 100 400 27 HOH HOH . D 4 HOH A 101 401 212 HOH HOH . D 4 HOH A 102 402 9 HOH HOH . D 4 HOH A 103 403 39 HOH HOH . D 4 HOH A 104 404 203 HOH HOH . D 4 HOH A 105 405 188 HOH HOH . D 4 HOH A 106 406 111 HOH HOH . D 4 HOH A 107 407 119 HOH HOH . D 4 HOH A 108 408 123 HOH HOH . D 4 HOH A 109 409 30 HOH HOH . D 4 HOH A 110 410 58 HOH HOH . D 4 HOH A 111 411 55 HOH HOH . D 4 HOH A 112 412 163 HOH HOH . D 4 HOH A 113 413 28 HOH HOH . D 4 HOH A 114 414 169 HOH HOH . D 4 HOH A 115 415 204 HOH HOH . D 4 HOH A 116 416 114 HOH HOH . D 4 HOH A 117 417 214 HOH HOH . D 4 HOH A 118 418 11 HOH HOH . D 4 HOH A 119 419 22 HOH HOH . D 4 HOH A 120 420 171 HOH HOH . D 4 HOH A 121 421 102 HOH HOH . D 4 HOH A 122 422 189 HOH HOH . D 4 HOH A 123 423 67 HOH HOH . D 4 HOH A 124 424 150 HOH HOH . D 4 HOH A 125 425 29 HOH HOH . D 4 HOH A 126 426 80 HOH HOH . D 4 HOH A 127 427 61 HOH HOH . D 4 HOH A 128 428 42 HOH HOH . D 4 HOH A 129 429 160 HOH HOH . D 4 HOH A 130 430 70 HOH HOH . D 4 HOH A 131 431 49 HOH HOH . D 4 HOH A 132 432 23 HOH HOH . D 4 HOH A 133 433 74 HOH HOH . D 4 HOH A 134 434 66 HOH HOH . D 4 HOH A 135 435 50 HOH HOH . D 4 HOH A 136 436 57 HOH HOH . D 4 HOH A 137 437 20 HOH HOH . D 4 HOH A 138 438 86 HOH HOH . D 4 HOH A 139 439 190 HOH HOH . D 4 HOH A 140 440 56 HOH HOH . D 4 HOH A 141 441 198 HOH HOH . D 4 HOH A 142 442 90 HOH HOH . D 4 HOH A 143 443 192 HOH HOH . D 4 HOH A 144 444 131 HOH HOH . D 4 HOH A 145 445 162 HOH HOH . D 4 HOH A 146 446 76 HOH HOH . D 4 HOH A 147 447 173 HOH HOH . D 4 HOH A 148 448 207 HOH HOH . D 4 HOH A 149 449 125 HOH HOH . D 4 HOH A 150 450 152 HOH HOH . D 4 HOH A 151 451 185 HOH HOH . D 4 HOH A 152 452 205 HOH HOH . D 4 HOH A 153 453 175 HOH HOH . D 4 HOH A 154 454 193 HOH HOH . D 4 HOH A 155 455 92 HOH HOH . D 4 HOH A 156 456 210 HOH HOH . D 4 HOH A 157 457 208 HOH HOH . D 4 HOH A 158 458 177 HOH HOH . D 4 HOH A 159 459 141 HOH HOH . D 4 HOH A 160 460 51 HOH HOH . D 4 HOH A 161 461 138 HOH HOH . D 4 HOH A 162 462 106 HOH HOH . D 4 HOH A 163 463 82 HOH HOH . D 4 HOH A 164 464 137 HOH HOH . D 4 HOH A 165 465 209 HOH HOH . D 4 HOH A 166 466 149 HOH HOH . D 4 HOH A 167 467 144 HOH HOH . D 4 HOH A 168 468 202 HOH HOH . D 4 HOH A 169 469 89 HOH HOH . D 4 HOH A 170 470 96 HOH HOH . D 4 HOH A 171 471 32 HOH HOH . D 4 HOH A 172 472 79 HOH HOH . D 4 HOH A 173 473 139 HOH HOH . D 4 HOH A 174 474 197 HOH HOH . D 4 HOH A 175 475 73 HOH HOH . D 4 HOH A 176 476 104 HOH HOH . D 4 HOH A 177 477 181 HOH HOH . D 4 HOH A 178 478 191 HOH HOH . D 4 HOH A 179 479 153 HOH HOH . D 4 HOH A 180 480 211 HOH HOH . D 4 HOH A 181 481 34 HOH HOH . D 4 HOH A 182 482 213 HOH HOH . D 4 HOH A 183 483 84 HOH HOH . D 4 HOH A 184 484 136 HOH HOH . D 4 HOH A 185 485 155 HOH HOH . D 4 HOH A 186 486 201 HOH HOH . D 4 HOH A 187 487 100 HOH HOH . D 4 HOH A 188 488 64 HOH HOH . D 4 HOH A 189 489 166 HOH HOH . D 4 HOH A 190 490 165 HOH HOH . D 4 HOH A 191 491 159 HOH HOH . D 4 HOH A 192 492 182 HOH HOH . D 4 HOH A 193 493 75 HOH HOH . D 4 HOH A 194 494 206 HOH HOH . D 4 HOH A 195 495 103 HOH HOH . D 4 HOH A 196 496 121 HOH HOH . D 4 HOH A 197 497 154 HOH HOH . D 4 HOH A 198 498 164 HOH HOH . D 4 HOH A 199 499 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 22.977 37.666 42.723 1 23.76 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 23.299 38.896 43.249 1 27.04 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 24.466 39.23 43.215 1 23.44 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 22.321 39.726 43.785 1 27.77 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 21.003 39.303 43.784 1 28.92 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 20.1 40.02 44.237 1 28.05 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 20.675 38.058 43.26 1 28.36 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 19.365 37.645 43.259 1 32.72 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 19.012 36.435 42.714 1 36.44 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 17.669 36.057 42.729 1 43.83 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 17.311 34.829 42.2 1 48.8 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 15.863 34.419 42.215 1 53.06 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 18.283 33.983 41.672 1 46.3 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 17.881 32.65 41.099 1 48.02 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 19.628 34.368 41.652 1 35.46 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 19.995 35.599 42.182 1 28.66 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 21.33 36.002 42.194 1 23.87 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 21.662 37.239 42.72 1 26.25 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 22.402 35.104 41.639 1 23.14 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 22.755 35.556 40.228 1 27.09 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 21.6 35.463 39.39 1 25.15 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 23.926 34.719 39.694 1 25.98 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 25.127 35.163 40.321 1 23.34 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 24.045 34.856 38.176 1 25.15 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 25.136 34.06 37.736 1 25.65 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 24.229 36.315 37.742 1 26.93 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 24.469 36.342 36.347 1 21.92 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 24.222 37.651 35.465 1 21.54 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 22.751 37.897 35.249 1 23.77 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 24.917 38.798 36.151 1 26.78 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 24.932 37.375 34.141 1 24.6 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #