data_6M90 # _model_server_result.job_id D6lfe6VgAgAC4xEI1rGjgg _model_server_result.datetime_utc '2024-12-21 16:12:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6M90 # _exptl.entry_id 6M90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.313 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2-fluorophenoxy)-3-{[2-oxo-6-(trifluoromethyl)-1,2-dihydropyridine-3-carbonyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M90 _cell.length_a 82.76 _cell.length_b 82.76 _cell.length_c 111.82 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASP 17 C ASP 32 1_555 C N SEP 18 C SEP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 C C SEP 18 C SEP 33 1_555 C N GLY 19 C GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C20 H12 F4 N2 O5' _chem_comp.formula_weight 436.313 _chem_comp.id J91 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(2-fluorophenoxy)-3-{[2-oxo-6-(trifluoromethyl)-1,2-dihydropyridine-3-carbonyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 J91 doub 173 n n O16 C14 J91 sing 174 n n C14 C02 J91 sing 175 n n C03 C02 J91 doub 176 n y C03 C04 J91 sing 177 n y C02 C01 J91 sing 178 n y C04 C05 J91 doub 179 n y C01 O07 J91 sing 180 n n C01 C06 J91 doub 181 n y O07 C08 J91 sing 182 n n C09 C08 J91 doub 183 n y C09 C10 J91 sing 184 n y C08 C13 J91 sing 185 n y C10 C11 J91 doub 186 n y C13 F31 J91 sing 187 n n C13 C12 J91 doub 188 n y C11 C12 J91 sing 189 n y C05 C06 J91 sing 190 n y C06 N17 J91 sing 191 n n N17 C18 J91 sing 192 n n O26 C21 J91 doub 193 n n C18 O19 J91 doub 194 n n C18 C20 J91 sing 195 n n C21 C20 J91 sing 196 n n C21 N22 J91 sing 197 n n C20 C25 J91 doub 198 n n N22 C23 J91 sing 199 n n C25 C24 J91 sing 200 n n C23 C24 J91 doub 201 n n C23 C27 J91 sing 202 n n F29 C27 J91 sing 203 n n C27 F28 J91 sing 204 n n C27 F30 J91 sing 205 n n C11 H1 J91 sing 206 n n C10 H2 J91 sing 207 n n C12 H3 J91 sing 208 n n C03 H4 J91 sing 209 n n C04 H5 J91 sing 210 n n C05 H6 J91 sing 211 n n C09 H7 J91 sing 212 n n C24 H8 J91 sing 213 n n C25 H10 J91 sing 214 n n N17 H11 J91 sing 215 n n O16 H12 J91 sing 216 n n N22 H9 J91 sing 217 n n # _atom_sites.entry_id 6M90 _atom_sites.fract_transf_matrix[1][1] 0.012083 _atom_sites.fract_transf_matrix[1][2] 0.006976 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 J91 A 1 601 1 J91 DRG . E 4 J91 A 1 602 2 J91 DRG . F 5 PO4 A 1 603 1 PO4 PO4 . G 6 HOH A 1 701 33 HOH HOH . G 6 HOH A 2 702 51 HOH HOH . G 6 HOH A 3 703 28 HOH HOH . G 6 HOH A 4 704 58 HOH HOH . G 6 HOH A 5 705 20 HOH HOH . G 6 HOH A 6 706 25 HOH HOH . G 6 HOH A 7 707 31 HOH HOH . G 6 HOH A 8 708 26 HOH HOH . G 6 HOH A 9 709 15 HOH HOH . G 6 HOH A 10 710 18 HOH HOH . G 6 HOH A 11 711 3 HOH HOH . G 6 HOH A 12 712 21 HOH HOH . G 6 HOH A 13 713 40 HOH HOH . G 6 HOH A 14 714 39 HOH HOH . G 6 HOH A 15 715 44 HOH HOH . G 6 HOH A 16 716 27 HOH HOH . G 6 HOH A 17 717 37 HOH HOH . G 6 HOH A 18 718 38 HOH HOH . G 6 HOH A 19 719 33 HOH HOH . G 6 HOH A 20 720 13 HOH HOH . G 6 HOH A 21 721 46 HOH HOH . G 6 HOH A 22 722 10 HOH HOH . G 6 HOH A 23 723 19 HOH HOH . G 6 HOH A 24 724 8 HOH HOH . G 6 HOH A 25 725 2 HOH HOH . G 6 HOH A 26 726 16 HOH HOH . G 6 HOH A 27 727 11 HOH HOH . G 6 HOH A 28 728 47 HOH HOH . G 6 HOH A 29 729 24 HOH HOH . G 6 HOH A 30 730 38 HOH HOH . G 6 HOH A 31 731 23 HOH HOH . G 6 HOH A 32 732 9 HOH HOH . G 6 HOH A 33 733 36 HOH HOH . G 6 HOH A 34 734 41 HOH HOH . G 6 HOH A 35 735 49 HOH HOH . G 6 HOH A 36 736 57 HOH HOH . G 6 HOH A 37 737 2 HOH HOH . G 6 HOH A 38 738 35 HOH HOH . G 6 HOH A 39 739 55 HOH HOH . G 6 HOH A 40 740 12 HOH HOH . G 6 HOH A 41 741 48 HOH HOH . G 6 HOH A 42 742 32 HOH HOH . G 6 HOH A 43 743 39 HOH HOH . G 6 HOH A 44 744 43 HOH HOH . G 6 HOH A 45 745 37 HOH HOH . G 6 HOH A 46 746 59 HOH HOH . G 6 HOH A 47 747 3 HOH HOH . G 6 HOH A 48 748 9 HOH HOH . G 6 HOH A 49 749 50 HOH HOH . G 6 HOH A 50 750 46 HOH HOH . G 6 HOH A 51 751 6 HOH HOH . G 6 HOH A 52 752 42 HOH HOH . G 6 HOH A 53 753 5 HOH HOH . G 6 HOH A 54 754 54 HOH HOH . G 6 HOH A 55 755 45 HOH HOH . G 6 HOH A 56 756 51 HOH HOH . G 6 HOH A 57 757 24 HOH HOH . G 6 HOH A 58 758 22 HOH HOH . G 6 HOH A 59 759 4 HOH HOH . G 6 HOH A 60 760 7 HOH HOH . G 6 HOH A 61 761 5 HOH HOH . G 6 HOH A 62 762 26 HOH HOH . G 6 HOH A 63 763 53 HOH HOH . H 6 HOH B 1 201 19 HOH HOH . H 6 HOH B 2 202 6 HOH HOH . H 6 HOH B 3 203 48 HOH HOH . H 6 HOH B 4 204 49 HOH HOH . H 6 HOH B 5 205 27 HOH HOH . H 6 HOH B 6 206 25 HOH HOH . I 6 HOH C 1 101 16 HOH HOH . I 6 HOH C 2 102 17 HOH HOH . I 6 HOH C 3 103 1 HOH HOH . I 6 HOH C 4 104 31 HOH HOH . I 6 HOH C 5 105 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 J91 . . . D 4 2.39 8.185 -21.042 1 69.29 ? C14 J91 601 A 1 HETATM 2 C C11 J91 . . . D 4 -0.639 5.192 -17.753 1 60.92 ? C11 J91 601 A 1 HETATM 3 C C10 J91 . . . D 4 0.724 5.116 -18.04 1 55.74 ? C10 J91 601 A 1 HETATM 4 C C12 J91 . . . D 4 -1.254 6.434 -17.646 1 59.7 ? C12 J91 601 A 1 HETATM 5 C C13 J91 . . . D 4 -0.478 7.568 -17.83 1 55.55 ? C13 J91 601 A 1 HETATM 6 C C01 J91 . . . D 4 2.891 8.589 -18.523 1 61.18 ? C01 J91 601 A 1 HETATM 7 C C02 J91 . . . D 4 3.347 8.347 -19.83 1 62.6 ? C02 J91 601 A 1 HETATM 8 C C03 J91 . . . D 4 4.715 8.239 -20.046 1 61.19 ? C03 J91 601 A 1 HETATM 9 C C04 J91 . . . D 4 5.59 8.378 -18.963 1 62.63 ? C04 J91 601 A 1 HETATM 10 C C05 J91 . . . D 4 5.111 8.633 -17.672 1 63.14 ? C05 J91 601 A 1 HETATM 11 C C06 J91 . . . D 4 3.726 8.743 -17.419 1 60.47 ? C06 J91 601 A 1 HETATM 12 C C08 J91 . . . D 4 0.88 7.528 -18.112 1 50.51 ? C08 J91 601 A 1 HETATM 13 C C09 J91 . . . D 4 1.497 6.267 -18.227 1 58.82 ? C09 J91 601 A 1 HETATM 14 C C18 J91 . . . D 4 3.767 9.273 -14.882 1 58.41 ? C18 J91 601 A 1 HETATM 15 C C20 J91 . . . D 4 2.862 9.549 -13.727 1 58.01 ? C20 J91 601 A 1 HETATM 16 C C21 J91 . . . D 4 1.42 9.715 -14.017 1 58.04 ? C21 J91 601 A 1 HETATM 17 C C23 J91 . . . D 4 0.97 10.081 -11.769 1 54.21 ? C23 J91 601 A 1 HETATM 18 C C24 J91 . . . D 4 2.312 9.955 -11.387 1 54.56 ? C24 J91 601 A 1 HETATM 19 C C25 J91 . . . D 4 3.241 9.688 -12.414 1 53.85 ? C25 J91 601 A 1 HETATM 20 C C27 J91 . . . D 4 -0.094 10.396 -10.707 1 51.79 ? C27 J91 601 A 1 HETATM 21 F F28 J91 . . . D 4 -0.33 11.682 -10.516 1 52.08 ? F28 J91 601 A 1 HETATM 22 F F29 J91 . . . D 4 -1.319 9.903 -10.97 1 50.84 ? F29 J91 601 A 1 HETATM 23 F F30 J91 . . . D 4 0.177 9.933 -9.487 1 58.28 ? F30 J91 601 A 1 HETATM 24 F F31 J91 . . . D 4 -1.052 8.78 -17.725 1 57.14 ? F31 J91 601 A 1 HETATM 25 N N17 J91 . . . D 4 3.189 9.009 -16.131 1 54.79 ? N17 J91 601 A 1 HETATM 26 N N22 J91 . . . D 4 0.504 9.982 -12.981 1 52.45 ? N22 J91 601 A 1 HETATM 27 O O07 J91 . . . D 4 1.545 8.71 -18.282 1 50.44 ? O07 J91 601 A 1 HETATM 28 O O15 J91 . . . D 4 2.274 7.043 -21.534 1 70.55 -1 O15 J91 601 A 1 HETATM 29 O O16 J91 . . . D 4 1.787 9.208 -21.441 1 79.18 ? O16 J91 601 A 1 HETATM 30 O O19 J91 . . . D 4 4.984 9.288 -14.735 1 59.73 ? O19 J91 601 A 1 HETATM 31 O O26 J91 . . . D 4 0.917 9.623 -15.149 1 49.98 ? O26 J91 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #