data_6M92 # _model_server_result.job_id 2CANjlCvQNdMfyIV8zs_Eg _model_server_result.datetime_utc '2024-12-21 18:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6M92 # _exptl.entry_id 6M92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.323 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{[2-oxo-4-phenoxy-6-(trifluoromethyl)-1,2-dihydropyridine-3-carbonyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M92 _cell.length_a 82.59 _cell.length_b 82.59 _cell.length_c 111.11 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASP 17 C ASP 32 1_555 C N SEP 18 C SEP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C SEP 18 C SEP 33 1_555 C N GLY 19 C GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C20 H13 F3 N2 O5' _chem_comp.formula_weight 418.323 _chem_comp.id J8V _chem_comp.mon_nstd_flag . _chem_comp.name '3-{[2-oxo-4-phenoxy-6-(trifluoromethyl)-1,2-dihydropyridine-3-carbonyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C09 J8V doub 173 n n O10 C09 J8V sing 174 n n C09 C02 J8V sing 175 n n C03 C02 J8V doub 176 n y C03 C04 J8V sing 177 n y C02 C01 J8V sing 178 n y C04 C05 J8V doub 179 n y C01 C06 J8V doub 180 n y C05 C06 J8V sing 181 n y C06 N07 J8V sing 182 n n N07 C08 J8V sing 183 n n O19 C18 J8V doub 184 n n C08 O12 J8V doub 185 n n C08 C13 J8V sing 186 n n C18 C13 J8V sing 187 n n C18 N17 J8V sing 188 n n C13 C14 J8V doub 189 n n N17 C16 J8V sing 190 n n C14 O24 J8V sing 191 n n C14 C15 J8V sing 192 n n O24 C25 J8V sing 193 n n C16 C15 J8V doub 194 n n C16 C20 J8V sing 195 n n F21 C20 J8V sing 196 n n C20 F23 J8V sing 197 n n C20 F22 J8V sing 198 n n C25 C26 J8V doub 199 n y C25 C30 J8V sing 200 n y C26 C27 J8V sing 201 n y C30 C29 J8V doub 202 n y C27 C28 J8V doub 203 n y C29 C28 J8V sing 204 n y C01 H2 J8V sing 205 n n C03 H3 J8V sing 206 n n C04 H4 J8V sing 207 n n C05 H5 J8V sing 208 n n C15 H6 J8V sing 209 n n C26 H7 J8V sing 210 n n C27 H8 J8V sing 211 n n C28 H9 J8V sing 212 n n C29 H10 J8V sing 213 n n C30 H11 J8V sing 214 n n N07 H12 J8V sing 215 n n O10 H13 J8V sing 216 n n N17 H1 J8V sing 217 n n # _atom_sites.entry_id 6M92 _atom_sites.fract_transf_matrix[1][1] 0.012108 _atom_sites.fract_transf_matrix[1][2] 0.006991 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 J8V A 1 601 1 J8V DRG . E 5 PO4 A 1 602 1 PO4 PO4 . F 6 HOH A 1 701 43 HOH HOH . F 6 HOH A 2 702 3 HOH HOH . F 6 HOH A 3 703 6 HOH HOH . F 6 HOH A 4 704 32 HOH HOH . F 6 HOH A 5 705 10 HOH HOH . F 6 HOH A 6 706 35 HOH HOH . F 6 HOH A 7 707 14 HOH HOH . F 6 HOH A 8 708 28 HOH HOH . F 6 HOH A 9 709 61 HOH HOH . F 6 HOH A 10 710 13 HOH HOH . F 6 HOH A 11 711 40 HOH HOH . F 6 HOH A 12 712 5 HOH HOH . F 6 HOH A 13 713 41 HOH HOH . F 6 HOH A 14 714 4 HOH HOH . F 6 HOH A 15 715 15 HOH HOH . F 6 HOH A 16 716 16 HOH HOH . F 6 HOH A 17 717 12 HOH HOH . F 6 HOH A 18 718 54 HOH HOH . F 6 HOH A 19 719 45 HOH HOH . F 6 HOH A 20 720 46 HOH HOH . F 6 HOH A 21 721 11 HOH HOH . F 6 HOH A 22 722 18 HOH HOH . F 6 HOH A 23 723 47 HOH HOH . F 6 HOH A 24 724 30 HOH HOH . F 6 HOH A 25 725 52 HOH HOH . F 6 HOH A 26 726 51 HOH HOH . F 6 HOH A 27 727 49 HOH HOH . F 6 HOH A 28 728 62 HOH HOH . F 6 HOH A 29 729 27 HOH HOH . F 6 HOH A 30 730 44 HOH HOH . F 6 HOH A 31 731 37 HOH HOH . F 6 HOH A 32 732 50 HOH HOH . F 6 HOH A 33 733 48 HOH HOH . G 6 HOH C 1 101 63 HOH HOH . G 6 HOH C 2 102 1 HOH HOH . G 6 HOH C 3 103 2 HOH HOH . G 6 HOH C 4 104 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 J8V . . . D 4 -2.48 38.328 -11.826 0.79 77.34 ? C14 J8V 601 A 1 HETATM 2 C C13 J8V . . . D 4 -2.15 38.38 -13.172 0.79 76.42 ? C13 J8V 601 A 1 HETATM 3 C C01 J8V . . . D 4 -2.451 39.579 -18.062 0.79 63.69 ? C01 J8V 601 A 1 HETATM 4 C C02 J8V . . . D 4 -2.995 39.815 -19.322 0.79 68.34 ? C02 J8V 601 A 1 HETATM 5 C C03 J8V . . . D 4 -4.368 39.649 -19.469 0.79 72.45 ? C03 J8V 601 A 1 HETATM 6 C C04 J8V . . . D 4 -5.148 39.257 -18.371 0.79 66.54 ? C04 J8V 601 A 1 HETATM 7 C C05 J8V . . . D 4 -4.576 39.025 -17.113 0.79 62.63 ? C05 J8V 601 A 1 HETATM 8 C C06 J8V . . . D 4 -3.19 39.196 -16.931 0.79 66.34 ? C06 J8V 601 A 1 HETATM 9 C C08 J8V . . . D 4 -3.04 38.639 -14.38 0.79 66.09 ? C08 J8V 601 A 1 HETATM 10 C C09 J8V . . . D 4 -2.112 40.245 -20.519 0.79 83.08 ? C09 J8V 601 A 1 HETATM 11 C C15 J8V . . . D 4 -1.488 38.041 -10.832 0.79 67.79 ? C15 J8V 601 A 1 HETATM 12 C C16 J8V . . . D 4 -0.191 37.81 -11.176 0.79 67.18 ? C16 J8V 601 A 1 HETATM 13 C C18 J8V . . . D 4 -0.728 38.108 -13.533 0.79 69.2 ? C18 J8V 601 A 1 HETATM 14 C C20 J8V . . . D 4 0.906 37.487 -10.124 0.79 58.35 ? C20 J8V 601 A 1 HETATM 15 C C25 J8V . . . D 4 -3.906 39.111 -10.084 0.79 61.18 ? C25 J8V 601 A 1 HETATM 16 C C26 J8V . . . D 4 -3.521 40.431 -9.837 0.79 52.01 ? C26 J8V 601 A 1 HETATM 17 C C27 J8V . . . D 4 -3.656 40.969 -8.559 0.79 49.01 ? C27 J8V 601 A 1 HETATM 18 C C28 J8V . . . D 4 -4.176 40.211 -7.515 0.79 45.37 ? C28 J8V 601 A 1 HETATM 19 C C29 J8V . . . D 4 -4.559 38.895 -7.766 0.79 51.59 ? C29 J8V 601 A 1 HETATM 20 C C30 J8V . . . D 4 -4.43 38.34 -9.042 0.79 54.41 ? C30 J8V 601 A 1 HETATM 21 F F21 J8V . . . D 4 2.092 37.992 -10.43 0.79 56.5 ? F21 J8V 601 A 1 HETATM 22 F F22 J8V . . . D 4 0.606 37.927 -8.904 0.79 64.88 ? F22 J8V 601 A 1 HETATM 23 F F23 J8V . . . D 4 1.085 36.187 -10.025 0.79 58.08 ? F23 J8V 601 A 1 HETATM 24 N N07 J8V . . . D 4 -2.501 38.953 -15.646 0.79 63.12 ? N07 J8V 601 A 1 HETATM 25 N N17 J8V . . . D 4 0.167 37.838 -12.478 0.79 58.21 ? N17 J8V 601 A 1 HETATM 26 O O10 J8V . . . D 4 -1.714 41.438 -20.602 0.79 80.3 -1 O10 J8V 601 A 1 HETATM 27 O O11 J8V . . . D 4 -1.799 39.36 -21.386 0.79 98.24 ? O11 J8V 601 A 1 HETATM 28 O O12 J8V . . . D 4 -4.235 38.514 -14.184 0.79 78.34 ? O12 J8V 601 A 1 HETATM 29 O O19 J8V . . . D 4 -0.225 38.094 -14.618 0.79 57.52 ? O19 J8V 601 A 1 HETATM 30 O O24 J8V . . . D 4 -3.773 38.559 -11.372 0.79 79.4 ? O24 J8V 601 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #