data_6M93 # _model_server_result.job_id 9Xr9QD4Ob0tl60VjqBOYlQ _model_server_result.datetime_utc '2024-10-19 16:42:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6M93 # _exptl.entry_id 6M93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.255 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-oxo-N-[3-(1H-tetrazol-5-yl)phenyl]-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M93 _cell.length_a 82.53 _cell.length_b 82.53 _cell.length_c 111.26 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASP 17 C ASP 32 1_555 C N SEP 18 C SEP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 C C SEP 18 C SEP 33 1_555 C N GLY 19 C GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C14 H9 F3 N6 O2' _chem_comp.formula_weight 350.255 _chem_comp.id J8Y _chem_comp.mon_nstd_flag . _chem_comp.name 2-oxo-N-[3-(1H-tetrazol-5-yl)phenyl]-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C22 J8Y sing 173 n n F25 C22 J8Y sing 174 n n C22 F24 J8Y sing 175 n n C22 C04 J8Y sing 176 n n C05 C04 J8Y doub 177 n n C05 C06 J8Y sing 178 n n C04 N03 J8Y sing 179 n n C06 C07 J8Y doub 180 n n N03 C02 J8Y sing 181 n n C07 C02 J8Y sing 182 n n C07 C08 J8Y sing 183 n n C02 O01 J8Y doub 184 n n O09 C08 J8Y doub 185 n n C08 N10 J8Y sing 186 n n N10 C11 J8Y sing 187 n n C11 C12 J8Y doub 188 n y C11 C16 J8Y sing 189 n y C12 C13 J8Y sing 190 n y C16 C15 J8Y doub 191 n y C13 C14 J8Y doub 192 n y C15 C14 J8Y sing 193 n y C15 C17 J8Y sing 194 n n C17 N21 J8Y doub 195 n y C17 N18 J8Y sing 196 n y N21 N20 J8Y sing 197 n y N18 N19 J8Y sing 198 n y N20 N19 J8Y doub 199 n y C14 H1 J8Y sing 200 n n C12 H2 J8Y sing 201 n n C13 H3 J8Y sing 202 n n C05 H4 J8Y sing 203 n n C06 H6 J8Y sing 204 n n C16 H7 J8Y sing 205 n n N10 H8 J8Y sing 206 n n N18 H9 J8Y sing 207 n n N03 H5 J8Y sing 208 n n # _atom_sites.entry_id 6M93 _atom_sites.fract_transf_matrix[1][1] 0.012117 _atom_sites.fract_transf_matrix[1][2] 0.006996 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 J8Y A 1 601 1 J8Y DRG . E 5 PO4 A 1 602 1 PO4 PO4 . F 6 HOH A 1 701 5 HOH HOH . F 6 HOH A 2 702 2 HOH HOH . F 6 HOH A 3 703 27 HOH HOH . F 6 HOH A 4 704 38 HOH HOH . F 6 HOH A 5 705 46 HOH HOH . F 6 HOH A 6 706 52 HOH HOH . F 6 HOH A 7 707 7 HOH HOH . F 6 HOH A 8 708 50 HOH HOH . F 6 HOH A 9 709 47 HOH HOH . F 6 HOH A 10 710 21 HOH HOH . F 6 HOH A 11 711 10 HOH HOH . F 6 HOH A 12 712 11 HOH HOH . G 6 HOH C 1 101 51 HOH HOH . G 6 HOH C 2 102 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 J8Y . . . D 4 8.856 -0.496 19.016 0.78 73.86 ? C14 J8Y 601 A 1 HETATM 2 C C11 J8Y . . . D 4 8.892 -1.585 16.366 0.78 72.07 ? C11 J8Y 601 A 1 HETATM 3 C C12 J8Y . . . D 4 9.575 -0.398 16.677 0.78 72.09 ? C12 J8Y 601 A 1 HETATM 4 C C13 J8Y . . . D 4 9.55 0.127 17.97 0.78 71.35 ? C13 J8Y 601 A 1 HETATM 5 C C02 J8Y . . . D 4 8.488 -4.112 12.602 0.78 64.88 ? C02 J8Y 601 A 1 HETATM 6 C C04 J8Y . . . D 4 8.752 -4.664 10.33 0.78 61.22 ? C04 J8Y 601 A 1 HETATM 7 C C05 J8Y . . . D 4 9.401 -3.455 10.102 0.78 59.78 ? C05 J8Y 601 A 1 HETATM 8 C C06 J8Y . . . D 4 9.589 -2.55 11.173 0.78 61.72 ? C06 J8Y 601 A 1 HETATM 9 C C07 J8Y . . . D 4 9.158 -2.785 12.474 0.78 64.99 ? C07 J8Y 601 A 1 HETATM 10 C C08 J8Y . . . D 4 9.296 -1.93 13.697 0.78 66.48 ? C08 J8Y 601 A 1 HETATM 11 C C15 J8Y . . . D 4 8.144 -1.69 18.818 0.78 75.63 ? C15 J8Y 601 A 1 HETATM 12 C C16 J8Y . . . D 4 8.218 -2.157 17.487 0.78 72.59 ? C16 J8Y 601 A 1 HETATM 13 C C17 J8Y . . . D 4 7.38 -2.405 19.913 0.78 81.55 ? C17 J8Y 601 A 1 HETATM 14 C C22 J8Y . . . D 4 8.544 -5.651 9.223 0.78 60.57 ? C22 J8Y 601 A 1 HETATM 15 F F23 J8Y . . . D 4 8.322 -5.17 8.003 0.78 62.13 ? F23 J8Y 601 A 1 HETATM 16 F F24 J8Y . . . D 4 7.406 -6.467 9.378 0.78 61.36 ? F24 J8Y 601 A 1 HETATM 17 F F25 J8Y . . . D 4 9.479 -6.583 9.071 0.78 61.17 ? F25 J8Y 601 A 1 HETATM 18 N N03 J8Y . . . D 4 8.321 -4.984 11.476 0.78 64.21 ? N03 J8Y 601 A 1 HETATM 19 N N10 J8Y . . . D 4 8.873 -2.208 15.036 0.78 66.83 ? N10 J8Y 601 A 1 HETATM 20 N N18 J8Y . . . D 4 6.221 -1.924 20.529 0.78 85.08 ? N18 J8Y 601 A 1 HETATM 21 N N19 J8Y . . . D 4 5.838 -2.834 21.426 0.78 87 ? N19 J8Y 601 A 1 HETATM 22 N N20 J8Y . . . D 4 6.696 -3.881 21.405 0.78 86.7 ? N20 J8Y 601 A 1 HETATM 23 N N21 J8Y . . . D 4 7.641 -3.663 20.499 0.78 84.66 ? N21 J8Y 601 A 1 HETATM 24 O O01 J8Y . . . D 4 8.015 -4.583 13.618 0.78 61.88 ? O01 J8Y 601 A 1 HETATM 25 O O09 J8Y . . . D 4 9.856 -0.834 13.578 0.78 71.66 ? O09 J8Y 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #