data_6M9A # _model_server_result.job_id X7Tbvf6oki6xMQXi-3ssTw _model_server_result.datetime_utc '2024-11-05 00:10:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6M9A # _exptl.entry_id 6M9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.58 _cell.angle_gamma 90 _cell.entry_id 6M9A _cell.length_a 145.16 _cell.length_b 49.64 _cell.length_c 68.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,L 1 1,3 C,J,K,N 1 2,4 B,G,H,I,M 1 5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_566 x,y+1,z+1 1 0 0 0 1 0 0 0 1 -23.952224 49.64 63.791462 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -23.952224 0 63.791462 4 'crystal symmetry operation' 2_565 -x,y+1,-z -1 0 0 0 1 0 0 0 -1 0 49.64 0 5 'crystal symmetry operation' 3_454 x-1/2,y+1/2,z-1 1 0 0 0 1 0 0 0 1 -48.627776 24.82 -63.791462 6 'crystal symmetry operation' 4_557 -x+1/2,y+1/2,-z+2 -1 0 0 0 1 0 0 0 -1 24.675552 24.82 127.582923 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 109 A HIS 109 1_555 D FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A O ASP 135 A ASP 135 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 D FE HEM . A HEM 200 1_555 E O1 PEO . A PEO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc4 D FE HEM . A HEM 200 1_555 E O2 PEO . A PEO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc5 F CA CA . A CA 202 1_555 L O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc6 F CA CA . A CA 202 1_555 L O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc7 B NE2 HIS 109 B HIS 109 1_555 G FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc8 B O ASP 135 B ASP 135 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc9 G FE HEM . B HEM 200 1_555 H O1 PEO . B PEO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc10 I CA CA . B CA 202 1_555 M O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc11 I CA CA . B CA 202 1_555 M O HOH . B HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc12 I CA CA . B CA 202 1_555 M O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc13 C NE2 HIS 109 C HIS 109 1_555 J FE HEM . C HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc14 C O ASP 135 C ASP 135 1_555 K CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc15 J FE HEM . C HEM 200 1_555 N O HOH . C HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc16 K CA CA . C CA 201 1_555 N O HOH . C HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc17 K CA CA . C CA 201 1_555 N O HOH . C HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M9A _atom_sites.fract_transf_matrix[1][1] 0.006889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 200 200 HEM HEM . E 3 PEO A 1 201 201 PEO OXY . F 4 CA A 1 202 202 CA CA . G 2 HEM B 1 200 200 HEM HEM . H 3 PEO B 1 201 201 PEO OXY . I 4 CA B 1 202 202 CA CA . J 2 HEM C 1 200 200 HEM HEM . K 4 CA C 1 201 201 CA CA . L 5 HOH A 1 301 258 HOH HOH . L 5 HOH A 2 302 226 HOH HOH . L 5 HOH A 3 303 250 HOH HOH . L 5 HOH A 4 304 269 HOH HOH . L 5 HOH A 5 305 246 HOH HOH . L 5 HOH A 6 306 208 HOH HOH . L 5 HOH A 7 307 262 HOH HOH . L 5 HOH A 8 308 239 HOH HOH . L 5 HOH A 9 309 215 HOH HOH . L 5 HOH A 10 310 209 HOH HOH . L 5 HOH A 11 311 214 HOH HOH . L 5 HOH A 12 312 241 HOH HOH . L 5 HOH A 13 313 229 HOH HOH . L 5 HOH A 14 314 224 HOH HOH . L 5 HOH A 15 315 242 HOH HOH . L 5 HOH A 16 316 228 HOH HOH . L 5 HOH A 17 317 253 HOH HOH . L 5 HOH A 18 318 234 HOH HOH . L 5 HOH A 19 319 256 HOH HOH . L 5 HOH A 20 320 252 HOH HOH . L 5 HOH A 21 321 218 HOH HOH . L 5 HOH A 22 322 213 HOH HOH . L 5 HOH A 23 323 221 HOH HOH . L 5 HOH A 24 324 222 HOH HOH . L 5 HOH A 25 325 207 HOH HOH . L 5 HOH A 26 326 237 HOH HOH . L 5 HOH A 27 327 244 HOH HOH . L 5 HOH A 28 328 240 HOH HOH . L 5 HOH A 29 329 231 HOH HOH . L 5 HOH A 30 330 206 HOH HOH . L 5 HOH A 31 331 233 HOH HOH . L 5 HOH A 32 332 248 HOH HOH . L 5 HOH A 33 333 216 HOH HOH . L 5 HOH A 34 334 203 HOH HOH . L 5 HOH A 35 335 266 HOH HOH . L 5 HOH A 36 336 225 HOH HOH . L 5 HOH A 37 337 212 HOH HOH . L 5 HOH A 38 338 263 HOH HOH . L 5 HOH A 39 339 205 HOH HOH . L 5 HOH A 40 340 219 HOH HOH . L 5 HOH A 41 341 220 HOH HOH . L 5 HOH A 42 342 260 HOH HOH . L 5 HOH A 43 343 235 HOH HOH . L 5 HOH A 44 344 210 HOH HOH . L 5 HOH A 45 345 270 HOH HOH . L 5 HOH A 46 346 249 HOH HOH . L 5 HOH A 47 347 245 HOH HOH . L 5 HOH A 48 348 247 HOH HOH . L 5 HOH A 49 349 223 HOH HOH . L 5 HOH A 50 350 254 HOH HOH . L 5 HOH A 51 351 232 HOH HOH . L 5 HOH A 52 352 264 HOH HOH . L 5 HOH A 53 353 272 HOH HOH . L 5 HOH A 54 354 236 HOH HOH . L 5 HOH A 55 355 273 HOH HOH . L 5 HOH A 56 356 265 HOH HOH . L 5 HOH A 57 357 251 HOH HOH . L 5 HOH A 58 358 243 HOH HOH . L 5 HOH A 59 359 259 HOH HOH . L 5 HOH A 60 360 227 HOH HOH . L 5 HOH A 61 361 230 HOH HOH . L 5 HOH A 62 362 238 HOH HOH . L 5 HOH A 63 363 211 HOH HOH . L 5 HOH A 64 364 261 HOH HOH . L 5 HOH A 65 365 268 HOH HOH . L 5 HOH A 66 366 204 HOH HOH . L 5 HOH A 67 367 217 HOH HOH . L 5 HOH A 68 368 267 HOH HOH . M 5 HOH B 1 301 227 HOH HOH . M 5 HOH B 2 302 244 HOH HOH . M 5 HOH B 3 303 230 HOH HOH . M 5 HOH B 4 304 208 HOH HOH . M 5 HOH B 5 305 255 HOH HOH . M 5 HOH B 6 306 205 HOH HOH . M 5 HOH B 7 307 237 HOH HOH . M 5 HOH B 8 308 223 HOH HOH . M 5 HOH B 9 309 214 HOH HOH . M 5 HOH B 10 310 203 HOH HOH . M 5 HOH B 11 311 248 HOH HOH . M 5 HOH B 12 312 243 HOH HOH . M 5 HOH B 13 313 225 HOH HOH . M 5 HOH B 14 314 209 HOH HOH . M 5 HOH B 15 315 239 HOH HOH . M 5 HOH B 16 316 236 HOH HOH . M 5 HOH B 17 317 204 HOH HOH . M 5 HOH B 18 318 246 HOH HOH . M 5 HOH B 19 319 226 HOH HOH . M 5 HOH B 20 320 245 HOH HOH . M 5 HOH B 21 321 256 HOH HOH . M 5 HOH B 22 322 216 HOH HOH . M 5 HOH B 23 323 206 HOH HOH . M 5 HOH B 24 324 228 HOH HOH . M 5 HOH B 25 325 221 HOH HOH . M 5 HOH B 26 326 217 HOH HOH . M 5 HOH B 27 327 212 HOH HOH . M 5 HOH B 28 328 207 HOH HOH . M 5 HOH B 29 329 229 HOH HOH . M 5 HOH B 30 330 218 HOH HOH . M 5 HOH B 31 331 215 HOH HOH . M 5 HOH B 32 332 253 HOH HOH . M 5 HOH B 33 333 232 HOH HOH . M 5 HOH B 34 334 233 HOH HOH . M 5 HOH B 35 335 234 HOH HOH . M 5 HOH B 36 336 249 HOH HOH . M 5 HOH B 37 337 241 HOH HOH . M 5 HOH B 38 338 220 HOH HOH . M 5 HOH B 39 339 240 HOH HOH . M 5 HOH B 40 340 242 HOH HOH . M 5 HOH B 41 341 231 HOH HOH . M 5 HOH B 42 342 222 HOH HOH . M 5 HOH B 43 343 247 HOH HOH . M 5 HOH B 44 344 224 HOH HOH . M 5 HOH B 45 345 257 HOH HOH . M 5 HOH B 46 346 251 HOH HOH . M 5 HOH B 47 347 219 HOH HOH . M 5 HOH B 48 348 238 HOH HOH . M 5 HOH B 49 349 235 HOH HOH . M 5 HOH B 50 350 250 HOH HOH . M 5 HOH B 51 351 211 HOH HOH . M 5 HOH B 52 352 252 HOH HOH . M 5 HOH B 53 353 255 HOH HOH . M 5 HOH B 54 354 210 HOH HOH . M 5 HOH B 55 355 213 HOH HOH . M 5 HOH B 56 356 254 HOH HOH . N 5 HOH C 1 301 261 HOH HOH . N 5 HOH C 2 302 237 HOH HOH . N 5 HOH C 3 303 212 HOH HOH . N 5 HOH C 4 304 220 HOH HOH . N 5 HOH C 5 305 260 HOH HOH . N 5 HOH C 6 306 213 HOH HOH . N 5 HOH C 7 307 205 HOH HOH . N 5 HOH C 8 308 250 HOH HOH . N 5 HOH C 9 309 225 HOH HOH . N 5 HOH C 10 310 222 HOH HOH . N 5 HOH C 11 311 256 HOH HOH . N 5 HOH C 12 312 226 HOH HOH . N 5 HOH C 13 313 206 HOH HOH . N 5 HOH C 14 314 239 HOH HOH . N 5 HOH C 15 315 253 HOH HOH . N 5 HOH C 16 316 242 HOH HOH . N 5 HOH C 17 317 245 HOH HOH . N 5 HOH C 18 318 207 HOH HOH . N 5 HOH C 19 319 204 HOH HOH . N 5 HOH C 20 320 202 HOH HOH . N 5 HOH C 21 321 230 HOH HOH . N 5 HOH C 22 322 223 HOH HOH . N 5 HOH C 23 323 211 HOH HOH . N 5 HOH C 24 324 231 HOH HOH . N 5 HOH C 25 325 219 HOH HOH . N 5 HOH C 26 326 224 HOH HOH . N 5 HOH C 27 327 221 HOH HOH . N 5 HOH C 28 328 257 HOH HOH . N 5 HOH C 29 329 236 HOH HOH . N 5 HOH C 30 330 229 HOH HOH . N 5 HOH C 31 331 209 HOH HOH . N 5 HOH C 32 332 246 HOH HOH . N 5 HOH C 33 333 215 HOH HOH . N 5 HOH C 34 334 203 HOH HOH . N 5 HOH C 35 335 238 HOH HOH . N 5 HOH C 36 336 258 HOH HOH . N 5 HOH C 37 337 234 HOH HOH . N 5 HOH C 38 338 232 HOH HOH . N 5 HOH C 39 339 217 HOH HOH . N 5 HOH C 40 340 208 HOH HOH . N 5 HOH C 41 341 244 HOH HOH . N 5 HOH C 42 342 227 HOH HOH . N 5 HOH C 43 343 255 HOH HOH . N 5 HOH C 44 344 228 HOH HOH . N 5 HOH C 45 345 243 HOH HOH . N 5 HOH C 46 346 248 HOH HOH . N 5 HOH C 47 347 247 HOH HOH . N 5 HOH C 48 348 218 HOH HOH . N 5 HOH C 49 349 251 HOH HOH . N 5 HOH C 50 350 241 HOH HOH . N 5 HOH C 51 351 252 HOH HOH . N 5 HOH C 52 352 233 HOH HOH . N 5 HOH C 53 353 214 HOH HOH . N 5 HOH C 54 354 235 HOH HOH . N 5 HOH C 55 355 240 HOH HOH . N 5 HOH C 56 356 210 HOH HOH . N 5 HOH C 57 357 259 HOH HOH . N 5 HOH C 58 358 257 HOH HOH . N 5 HOH C 59 359 216 HOH HOH . N 5 HOH C 60 360 271 HOH HOH . N 5 HOH C 61 361 249 HOH HOH . N 5 HOH C 62 362 254 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -12.405 _atom_site.Cartn_y -20.071 _atom_site.Cartn_z 25.772 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #