data_6M9L # _model_server_result.job_id UjufWc5lnLfEJ_hurBS8Fw _model_server_result.datetime_utc '2025-01-23 17:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6M9L # _exptl.entry_id 6M9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-benzyl-6-[(2,4-difluorophenyl)amino]-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M9L _cell.length_a 68.674 _cell.length_b 71.046 _cell.length_c 74.562 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H14 F2 N4 O' _chem_comp.formula_weight 352.337 _chem_comp.id J9G _chem_comp.mon_nstd_flag . _chem_comp.name 3-benzyl-6-[(2,4-difluorophenyl)amino]-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C19 J9G doub 173 n n C15 C14 J9G doub 174 n y C15 C16 J9G sing 175 n y C19 N21 J9G sing 176 n n C19 N11 J9G sing 177 n n C14 C13 J9G sing 178 n y C16 C17 J9G doub 179 n y N21 C23 J9G sing 180 n n C13 C12 J9G sing 181 n n C13 C18 J9G doub 182 n y C17 C18 J9G sing 183 n y N11 C12 J9G sing 184 n n N11 C10 J9G sing 185 n n C23 C10 J9G doub 186 n y C23 C24 J9G sing 187 n y C10 N9 J9G sing 188 n y C24 C7 J9G doub 189 n y N9 C8 J9G doub 190 n y F26 C25 J9G sing 191 n n C27 C25 J9G doub 192 n y C27 C2 J9G sing 193 n y C7 C8 J9G sing 194 n y C7 N6 J9G sing 195 n n F1 C2 J9G sing 196 n n C25 C5 J9G sing 197 n y C2 C3 J9G doub 198 n y C5 N6 J9G sing 199 n n C5 C4 J9G doub 200 n y C3 C4 J9G sing 201 n y C4 H1 J9G sing 202 n n C8 H2 J9G sing 203 n n C15 H3 J9G sing 204 n n C17 H4 J9G sing 205 n n C24 H5 J9G sing 206 n n C12 H6 J9G sing 207 n n C12 H7 J9G sing 208 n n C14 H8 J9G sing 209 n n C16 H9 J9G sing 210 n n C18 H10 J9G sing 211 n n C27 H11 J9G sing 212 n n C3 H12 J9G sing 213 n n N21 H13 J9G sing 214 n n N6 H14 J9G sing 215 n n # _atom_sites.entry_id 6M9L _atom_sites.fract_transf_matrix[1][1] 0.014562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J9G A 1 501 501 J9G LIG . C 3 HOH A 1 601 616 HOH HOH . C 3 HOH A 2 602 645 HOH HOH . C 3 HOH A 3 603 705 HOH HOH . C 3 HOH A 4 604 685 HOH HOH . C 3 HOH A 5 605 722 HOH HOH . C 3 HOH A 6 606 698 HOH HOH . C 3 HOH A 7 607 639 HOH HOH . C 3 HOH A 8 608 625 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 666 HOH HOH . C 3 HOH A 11 611 741 HOH HOH . C 3 HOH A 12 612 761 HOH HOH . C 3 HOH A 13 613 687 HOH HOH . C 3 HOH A 14 614 621 HOH HOH . C 3 HOH A 15 615 701 HOH HOH . C 3 HOH A 16 616 751 HOH HOH . C 3 HOH A 17 617 668 HOH HOH . C 3 HOH A 18 618 669 HOH HOH . C 3 HOH A 19 619 636 HOH HOH . C 3 HOH A 20 620 665 HOH HOH . C 3 HOH A 21 621 675 HOH HOH . C 3 HOH A 22 622 664 HOH HOH . C 3 HOH A 23 623 739 HOH HOH . C 3 HOH A 24 624 628 HOH HOH . C 3 HOH A 25 625 672 HOH HOH . C 3 HOH A 26 626 641 HOH HOH . C 3 HOH A 27 627 656 HOH HOH . C 3 HOH A 28 628 629 HOH HOH . C 3 HOH A 29 629 623 HOH HOH . C 3 HOH A 30 630 708 HOH HOH . C 3 HOH A 31 631 620 HOH HOH . C 3 HOH A 32 632 622 HOH HOH . C 3 HOH A 33 633 680 HOH HOH . C 3 HOH A 34 634 627 HOH HOH . C 3 HOH A 35 635 603 HOH HOH . C 3 HOH A 36 636 652 HOH HOH . C 3 HOH A 37 637 633 HOH HOH . C 3 HOH A 38 638 611 HOH HOH . C 3 HOH A 39 639 727 HOH HOH . C 3 HOH A 40 640 740 HOH HOH . C 3 HOH A 41 641 607 HOH HOH . C 3 HOH A 42 642 606 HOH HOH . C 3 HOH A 43 643 676 HOH HOH . C 3 HOH A 44 644 728 HOH HOH . C 3 HOH A 45 645 648 HOH HOH . C 3 HOH A 46 646 602 HOH HOH . C 3 HOH A 47 647 713 HOH HOH . C 3 HOH A 48 648 649 HOH HOH . C 3 HOH A 49 649 743 HOH HOH . C 3 HOH A 50 650 630 HOH HOH . C 3 HOH A 51 651 674 HOH HOH . C 3 HOH A 52 652 667 HOH HOH . C 3 HOH A 53 653 688 HOH HOH . C 3 HOH A 54 654 610 HOH HOH . C 3 HOH A 55 655 755 HOH HOH . C 3 HOH A 56 656 670 HOH HOH . C 3 HOH A 57 657 650 HOH HOH . C 3 HOH A 58 658 613 HOH HOH . C 3 HOH A 59 659 644 HOH HOH . C 3 HOH A 60 660 660 HOH HOH . C 3 HOH A 61 661 684 HOH HOH . C 3 HOH A 62 662 748 HOH HOH . C 3 HOH A 63 663 626 HOH HOH . C 3 HOH A 64 664 696 HOH HOH . C 3 HOH A 65 665 634 HOH HOH . C 3 HOH A 66 666 658 HOH HOH . C 3 HOH A 67 667 614 HOH HOH . C 3 HOH A 68 668 744 HOH HOH . C 3 HOH A 69 669 662 HOH HOH . C 3 HOH A 70 670 718 HOH HOH . C 3 HOH A 71 671 686 HOH HOH . C 3 HOH A 72 672 638 HOH HOH . C 3 HOH A 73 673 730 HOH HOH . C 3 HOH A 74 674 724 HOH HOH . C 3 HOH A 75 675 618 HOH HOH . C 3 HOH A 76 676 678 HOH HOH . C 3 HOH A 77 677 738 HOH HOH . C 3 HOH A 78 678 742 HOH HOH . C 3 HOH A 79 679 615 HOH HOH . C 3 HOH A 80 680 619 HOH HOH . C 3 HOH A 81 681 655 HOH HOH . C 3 HOH A 82 682 749 HOH HOH . C 3 HOH A 83 683 643 HOH HOH . C 3 HOH A 84 684 682 HOH HOH . C 3 HOH A 85 685 632 HOH HOH . C 3 HOH A 86 686 746 HOH HOH . C 3 HOH A 87 687 694 HOH HOH . C 3 HOH A 88 688 681 HOH HOH . C 3 HOH A 89 689 642 HOH HOH . C 3 HOH A 90 690 604 HOH HOH . C 3 HOH A 91 691 612 HOH HOH . C 3 HOH A 92 692 714 HOH HOH . C 3 HOH A 93 693 707 HOH HOH . C 3 HOH A 94 694 683 HOH HOH . C 3 HOH A 95 695 608 HOH HOH . C 3 HOH A 96 696 733 HOH HOH . C 3 HOH A 97 697 651 HOH HOH . C 3 HOH A 98 698 637 HOH HOH . C 3 HOH A 99 699 757 HOH HOH . C 3 HOH A 100 700 735 HOH HOH . C 3 HOH A 101 701 653 HOH HOH . C 3 HOH A 102 702 671 HOH HOH . C 3 HOH A 103 703 731 HOH HOH . C 3 HOH A 104 704 717 HOH HOH . C 3 HOH A 105 705 726 HOH HOH . C 3 HOH A 106 706 737 HOH HOH . C 3 HOH A 107 707 754 HOH HOH . C 3 HOH A 108 708 663 HOH HOH . C 3 HOH A 109 709 605 HOH HOH . C 3 HOH A 110 710 752 HOH HOH . C 3 HOH A 111 711 720 HOH HOH . C 3 HOH A 112 712 732 HOH HOH . C 3 HOH A 113 713 719 HOH HOH . C 3 HOH A 114 714 721 HOH HOH . C 3 HOH A 115 715 760 HOH HOH . C 3 HOH A 116 716 601 HOH HOH . C 3 HOH A 117 717 673 HOH HOH . C 3 HOH A 118 718 710 HOH HOH . C 3 HOH A 119 719 695 HOH HOH . C 3 HOH A 120 720 679 HOH HOH . C 3 HOH A 121 721 677 HOH HOH . C 3 HOH A 122 722 690 HOH HOH . C 3 HOH A 123 723 712 HOH HOH . C 3 HOH A 124 724 711 HOH HOH . C 3 HOH A 125 725 729 HOH HOH . C 3 HOH A 126 726 745 HOH HOH . C 3 HOH A 127 727 692 HOH HOH . C 3 HOH A 128 728 661 HOH HOH . C 3 HOH A 129 729 758 HOH HOH . C 3 HOH A 130 730 734 HOH HOH . C 3 HOH A 131 731 716 HOH HOH . C 3 HOH A 132 732 706 HOH HOH . C 3 HOH A 133 733 715 HOH HOH . C 3 HOH A 134 734 697 HOH HOH . C 3 HOH A 135 735 693 HOH HOH . C 3 HOH A 136 736 723 HOH HOH . C 3 HOH A 137 737 659 HOH HOH . C 3 HOH A 138 738 750 HOH HOH . C 3 HOH A 139 739 756 HOH HOH . C 3 HOH A 140 740 725 HOH HOH . C 3 HOH A 141 741 640 HOH HOH . C 3 HOH A 142 742 689 HOH HOH . C 3 HOH A 143 743 747 HOH HOH . C 3 HOH A 144 744 736 HOH HOH . C 3 HOH A 145 745 624 HOH HOH . C 3 HOH A 146 746 635 HOH HOH . C 3 HOH A 147 747 753 HOH HOH . C 3 HOH A 148 748 631 HOH HOH . C 3 HOH A 149 749 759 HOH HOH . C 3 HOH A 150 750 762 HOH HOH . C 3 HOH A 151 751 657 HOH HOH . C 3 HOH A 152 752 709 HOH HOH . C 3 HOH A 153 753 654 HOH HOH . C 3 HOH A 154 754 763 HOH HOH . C 3 HOH A 155 755 699 HOH HOH . C 3 HOH A 156 756 691 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 J9G . . . B 2 21.977 -3.795 -20.605 1 17.88 ? C4 J9G 501 A 1 HETATM 2 C C5 J9G . . . B 2 22.663 -2.673 -21.005 1 17.81 ? C5 J9G 501 A 1 HETATM 3 C C7 J9G . . . B 2 21.386 -0.756 -21.786 1 19.25 ? C7 J9G 501 A 1 HETATM 4 C C8 J9G . . . B 2 20.529 0.272 -21.45 1 18.17 ? C8 J9G 501 A 1 HETATM 5 C C10 J9G . . . B 2 19.901 0.58 -23.546 1 19.45 ? C10 J9G 501 A 1 HETATM 6 C C13 J9G . . . B 2 18.924 3.466 -24.95 1 16.84 ? C13 J9G 501 A 1 HETATM 7 C C15 J9G . . . B 2 20.627 4.787 -25.961 1 20.53 ? C15 J9G 501 A 1 HETATM 8 C C17 J9G . . . B 2 18.865 5.842 -24.759 1 17.75 ? C17 J9G 501 A 1 HETATM 9 C C24 J9G . . . B 2 21.496 -1.13 -23.106 1 17.67 ? C24 J9G 501 A 1 HETATM 10 C C12 J9G . . . B 2 18.316 2.143 -24.647 1 17.47 ? C12 J9G 501 A 1 HETATM 11 C C14 J9G . . . B 2 20.08 3.556 -25.688 1 19.51 ? C14 J9G 501 A 1 HETATM 12 C C16 J9G . . . B 2 20.02 5.93 -25.497 1 19.98 ? C16 J9G 501 A 1 HETATM 13 C C18 J9G . . . B 2 18.319 4.61 -24.487 1 17.44 ? C18 J9G 501 A 1 HETATM 14 C C19 J9G . . . B 2 19.692 0.387 -25.803 1 18.15 ? C19 J9G 501 A 1 HETATM 15 C C2 J9G . . . B 2 23.73 -5.174 -21.427 1 16.12 ? C2 J9G 501 A 1 HETATM 16 C C23 J9G . . . B 2 20.716 -0.419 -23.981 1 15.58 ? C23 J9G 501 A 1 HETATM 17 C C25 J9G . . . B 2 23.887 -2.82 -21.614 1 16.18 ? C25 J9G 501 A 1 HETATM 18 C C27 J9G . . . B 2 24.43 -4.063 -21.83 1 15.32 ? C27 J9G 501 A 1 HETATM 19 C C3 J9G . . . B 2 22.506 -5.047 -20.815 1 15.57 ? C3 J9G 501 A 1 HETATM 20 F F1 J9G . . . B 2 24.247 -6.396 -21.633 1 12.94 ? F1 J9G 501 A 1 HETATM 21 F F26 J9G . . . B 2 24.563 -1.729 -22.005 1 16.28 ? F26 J9G 501 A 1 HETATM 22 N N11 J9G . . . B 2 19.275 1.072 -24.684 1 18.54 ? N11 J9G 501 A 1 HETATM 23 N N21 J9G . . . B 2 20.604 -0.555 -25.364 1 16.53 ? N21 J9G 501 A 1 HETATM 24 N N6 J9G . . . B 2 22.128 -1.399 -20.789 1 19.41 ? N6 J9G 501 A 1 HETATM 25 N N9 J9G . . . B 2 19.759 0.978 -22.285 1 20.7 ? N9 J9G 501 A 1 HETATM 26 O O20 J9G . . . B 2 19.329 0.574 -26.955 1 19.46 ? O20 J9G 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #