data_6M9T # _model_server_result.job_id 2wokg2TvNkYL82qiRwbxvg _model_server_result.datetime_utc '2025-03-01 01:04:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2106}' # _entry.id 6M9T # _exptl.entry_id 6M9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.83 _cell.angle_gamma 90 _cell.entry_id 6M9T _cell.length_a 120.8 _cell.length_b 54.85 _cell.length_c 96.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 142 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 130 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 220 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 208 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 352 n n C10 C9 OLC doub 353 n n C10 C11 OLC sing 354 n n C9 C8 OLC sing 355 n n C17 C16 OLC sing 356 z n C11 C12 OLC sing 357 n n C8 C7 OLC sing 358 n n C24 C22 OLC sing 359 n n C24 O25 OLC sing 360 n n C16 C15 OLC sing 361 n n C12 C13 OLC sing 362 n n C7 C6 OLC sing 363 n n C15 C14 OLC sing 364 n n C13 C14 OLC sing 365 n n C6 C5 OLC sing 366 n n C5 C4 OLC sing 367 n n C4 C3 OLC sing 368 n n C3 C2 OLC sing 369 n n C2 C1 OLC sing 370 n n C21 C22 OLC sing 371 n n C21 O20 OLC sing 372 n n C1 O19 OLC doub 373 n n C1 O20 OLC sing 374 n n C22 O23 OLC sing 375 n n C18 H18 OLC sing 376 n n C18 H18A OLC sing 377 n n C18 H18B OLC sing 378 n n C10 H10 OLC sing 379 n n C9 H9 OLC sing 380 n n C17 H17 OLC sing 381 n n C17 H17A OLC sing 382 n n C11 H11 OLC sing 383 n n C11 H11A OLC sing 384 n n C8 H8 OLC sing 385 n n C8 H8A OLC sing 386 n n C24 H24 OLC sing 387 n n C24 H24A OLC sing 388 n n C16 H16 OLC sing 389 n n C16 H16A OLC sing 390 n n C12 H12 OLC sing 391 n n C12 H12A OLC sing 392 n n C7 H7 OLC sing 393 n n C7 H7A OLC sing 394 n n C15 H15 OLC sing 395 n n C15 H15A OLC sing 396 n n C13 H13 OLC sing 397 n n C13 H13A OLC sing 398 n n C6 H6 OLC sing 399 n n C6 H6A OLC sing 400 n n C14 H14 OLC sing 401 n n C14 H14A OLC sing 402 n n C5 H5 OLC sing 403 n n C5 H5A OLC sing 404 n n C4 H4 OLC sing 405 n n C4 H4A OLC sing 406 n n C3 H3 OLC sing 407 n n C3 H3A OLC sing 408 n n C2 H2 OLC sing 409 n n C2 H2A OLC sing 410 n n C21 H21 OLC sing 411 n n C21 H21A OLC sing 412 n n C22 H22 OLC sing 413 n n O25 HO25 OLC sing 414 n n O23 HO23 OLC sing 415 n n # _atom_sites.entry_id 6M9T _atom_sites.fract_transf_matrix[1][1] 0.008278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000845 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J9P A 1 2101 1 J9P MIS . C 3 SO4 A 1 2102 1 SO4 SO4 . D 3 SO4 A 1 2103 2 SO4 SO4 . E 3 SO4 A 1 2104 3 SO4 SO4 . F 3 SO4 A 1 2105 4 SO4 SO4 . G 4 OLC A 1 2106 1 OLC OLC . H 5 OLA A 1 2107 2 OLA OLA . I 5 OLA A 1 2108 3 OLA OLA . J 5 OLA A 1 2109 4 OLA OLA . K 5 OLA A 1 2110 5 OLA OLA . L 6 HOH A 1 2201 5 HOH HOH . L 6 HOH A 2 2202 1 HOH HOH . L 6 HOH A 3 2203 2 HOH HOH . L 6 HOH A 4 2204 4 HOH HOH . L 6 HOH A 5 2205 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . G 4 142.037 -13.31 145.988 1 131.64 ? C10 OLC 2106 A 1 HETATM 2 C C9 OLC . . . G 4 142.008 -13.376 144.651 1 133.35 ? C9 OLC 2106 A 1 HETATM 3 C C11 OLC . . . G 4 141.902 -12.04 146.802 1 130.45 ? C11 OLC 2106 A 1 HETATM 4 C C8 OLC . . . G 4 141.827 -12.195 143.715 1 135.4 ? C8 OLC 2106 A 1 HETATM 5 C C24 OLC . . . G 4 137.751 -12.682 132.075 1 148.44 ? C24 OLC 2106 A 1 HETATM 6 C C12 OLC . . . G 4 142.822 -12.113 148.017 1 129.47 ? C12 OLC 2106 A 1 HETATM 7 C C7 OLC . . . G 4 141.912 -12.661 142.261 1 137.27 ? C7 OLC 2106 A 1 HETATM 8 C C13 OLC . . . G 4 142.067 -12.549 149.267 1 128.41 ? C13 OLC 2106 A 1 HETATM 9 C C6 OLC . . . G 4 140.562 -13.149 141.733 1 138.89 ? C6 OLC 2106 A 1 HETATM 10 C C14 OLC . . . G 4 142.967 -12.481 150.493 1 128.2 ? C14 OLC 2106 A 1 HETATM 11 C C5 OLC . . . G 4 140.565 -13.289 140.215 1 140.41 ? C5 OLC 2106 A 1 HETATM 12 C C4 OLC . . . G 4 139.169 -13.61 139.685 1 141.92 ? C4 OLC 2106 A 1 HETATM 13 C C3 OLC . . . G 4 139.221 -14.573 138.502 1 143.72 ? C3 OLC 2106 A 1 HETATM 14 C C2 OLC . . . G 4 139.062 -13.829 137.176 1 145.76 ? C2 OLC 2106 A 1 HETATM 15 C C21 OLC . . . G 4 139.052 -14.09 133.678 1 148.58 ? C21 OLC 2106 A 1 HETATM 16 C C1 OLC . . . G 4 139.671 -14.582 136.007 1 147.75 ? C1 OLC 2106 A 1 HETATM 17 C C22 OLC . . . G 4 138.022 -12.965 133.55 1 148.65 ? C22 OLC 2106 A 1 HETATM 18 O O19 OLC . . . G 4 140.837 -14.965 136.028 1 148.37 ? O19 OLC 2106 A 1 HETATM 19 O O25 OLC . . . G 4 136.796 -11.62 131.95 1 148.29 ? O25 OLC 2106 A 1 HETATM 20 O O23 OLC . . . G 4 136.791 -13.302 134.202 1 148.8 ? O23 OLC 2106 A 1 HETATM 21 O O20 OLC . . . G 4 138.898 -14.832 134.895 1 148.36 ? O20 OLC 2106 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #