data_6MA6 # _model_server_result.job_id -IVnRxlKiVM-nF5NXgMyhg _model_server_result.datetime_utc '2024-11-13 04:30:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ma6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6MA6 # _exptl.entry_id 6MA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MA6 _cell.length_a 76.935 _cell.length_b 101.457 _cell.length_c 127.406 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,4 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -76.935 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.935 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N14 MYT . A MYT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 151 n n CHA C4D HEM doub 152 n n CHA HHA HEM sing 153 n n CHB C4A HEM sing 154 n n CHB C1B HEM doub 155 n n CHB HHB HEM sing 156 n n CHC C4B HEM sing 157 n n CHC C1C HEM doub 158 n n CHC HHC HEM sing 159 n n CHD C4C HEM doub 160 n n CHD C1D HEM sing 161 n n CHD HHD HEM sing 162 n n C1A C2A HEM doub 163 n y C1A NA HEM sing 164 n y C2A C3A HEM sing 165 n y C2A CAA HEM sing 166 n n C3A C4A HEM doub 167 n y C3A CMA HEM sing 168 n n C4A NA HEM sing 169 n y CMA HMA HEM sing 170 n n CMA HMAA HEM sing 171 n n CMA HMAB HEM sing 172 n n CAA CBA HEM sing 173 n n CAA HAA HEM sing 174 n n CAA HAAA HEM sing 175 n n CBA CGA HEM sing 176 n n CBA HBA HEM sing 177 n n CBA HBAA HEM sing 178 n n CGA O1A HEM doub 179 n n CGA O2A HEM sing 180 n n C1B C2B HEM sing 181 n n C1B NB HEM sing 182 n n C2B C3B HEM doub 183 n n C2B CMB HEM sing 184 n n C3B C4B HEM sing 185 n n C3B CAB HEM sing 186 n n C4B NB HEM doub 187 n n CMB HMB HEM sing 188 n n CMB HMBA HEM sing 189 n n CMB HMBB HEM sing 190 n n CAB CBB HEM doub 191 n n CAB HAB HEM sing 192 n n CBB HBB HEM sing 193 n n CBB HBBA HEM sing 194 n n C1C C2C HEM sing 195 n y C1C NC HEM sing 196 n y C2C C3C HEM doub 197 n y C2C CMC HEM sing 198 n n C3C C4C HEM sing 199 n y C3C CAC HEM sing 200 n n C4C NC HEM sing 201 n y CMC HMC HEM sing 202 n n CMC HMCA HEM sing 203 n n CMC HMCB HEM sing 204 n n CAC CBC HEM doub 205 n n CAC HAC HEM sing 206 n n CBC HBC HEM sing 207 n n CBC HBCA HEM sing 208 n n C1D C2D HEM sing 209 n n C1D ND HEM doub 210 n n C2D C3D HEM doub 211 n n C2D CMD HEM sing 212 n n C3D C4D HEM sing 213 n n C3D CAD HEM sing 214 n n C4D ND HEM sing 215 n n CMD HMD HEM sing 216 n n CMD HMDA HEM sing 217 n n CMD HMDB HEM sing 218 n n CAD CBD HEM sing 219 n n CAD HAD HEM sing 220 n n CAD HADA HEM sing 221 n n CBD CGD HEM sing 222 n n CBD HBD HEM sing 223 n n CBD HBDA HEM sing 224 n n CGD O1D HEM doub 225 n n CGD O2D HEM sing 226 n n O2A H2A HEM sing 227 n n O2D H2D HEM sing 228 n n FE NA HEM sing 229 n n FE NB HEM sing 230 n n FE NC HEM sing 231 n n FE ND HEM sing 232 n n # _atom_sites.entry_id 6MA6 _atom_sites.fract_transf_matrix[1][1] 0.012998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 600 GOL GOL . D 4 MYT A 1 603 700 MYT MYR . E 5 EDO A 1 604 800 EDO EDO . F 6 HOH A 1 701 68 HOH HOH . F 6 HOH A 2 702 25 HOH HOH . F 6 HOH A 3 703 32 HOH HOH . F 6 HOH A 4 704 24 HOH HOH . F 6 HOH A 5 705 64 HOH HOH . F 6 HOH A 6 706 50 HOH HOH . F 6 HOH A 7 707 65 HOH HOH . F 6 HOH A 8 708 44 HOH HOH . F 6 HOH A 9 709 28 HOH HOH . F 6 HOH A 10 710 14 HOH HOH . F 6 HOH A 11 711 42 HOH HOH . F 6 HOH A 12 712 80 HOH HOH . F 6 HOH A 13 713 8 HOH HOH . F 6 HOH A 14 714 27 HOH HOH . F 6 HOH A 15 715 40 HOH HOH . F 6 HOH A 16 716 59 HOH HOH . F 6 HOH A 17 717 21 HOH HOH . F 6 HOH A 18 718 81 HOH HOH . F 6 HOH A 19 719 76 HOH HOH . F 6 HOH A 20 720 17 HOH HOH . F 6 HOH A 21 721 62 HOH HOH . F 6 HOH A 22 722 56 HOH HOH . F 6 HOH A 23 723 79 HOH HOH . F 6 HOH A 24 724 74 HOH HOH . F 6 HOH A 25 725 10 HOH HOH . F 6 HOH A 26 726 1 HOH HOH . F 6 HOH A 27 727 77 HOH HOH . F 6 HOH A 28 728 71 HOH HOH . F 6 HOH A 29 729 29 HOH HOH . F 6 HOH A 30 730 31 HOH HOH . F 6 HOH A 31 731 58 HOH HOH . F 6 HOH A 32 732 20 HOH HOH . F 6 HOH A 33 733 51 HOH HOH . F 6 HOH A 34 734 66 HOH HOH . F 6 HOH A 35 735 57 HOH HOH . F 6 HOH A 36 736 23 HOH HOH . F 6 HOH A 37 737 12 HOH HOH . F 6 HOH A 38 738 69 HOH HOH . F 6 HOH A 39 739 5 HOH HOH . F 6 HOH A 40 740 26 HOH HOH . F 6 HOH A 41 741 48 HOH HOH . F 6 HOH A 42 742 19 HOH HOH . F 6 HOH A 43 743 75 HOH HOH . F 6 HOH A 44 744 2 HOH HOH . F 6 HOH A 45 745 9 HOH HOH . F 6 HOH A 46 746 78 HOH HOH . F 6 HOH A 47 747 72 HOH HOH . F 6 HOH A 48 748 4 HOH HOH . F 6 HOH A 49 749 60 HOH HOH . F 6 HOH A 50 750 73 HOH HOH . F 6 HOH A 51 751 52 HOH HOH . F 6 HOH A 52 752 6 HOH HOH . F 6 HOH A 53 753 11 HOH HOH . F 6 HOH A 54 754 35 HOH HOH . F 6 HOH A 55 755 53 HOH HOH . F 6 HOH A 56 756 49 HOH HOH . F 6 HOH A 57 757 7 HOH HOH . F 6 HOH A 58 758 55 HOH HOH . F 6 HOH A 59 759 30 HOH HOH . F 6 HOH A 60 760 18 HOH HOH . F 6 HOH A 61 761 70 HOH HOH . F 6 HOH A 62 762 61 HOH HOH . F 6 HOH A 63 763 39 HOH HOH . F 6 HOH A 64 764 45 HOH HOH . F 6 HOH A 65 765 47 HOH HOH . F 6 HOH A 66 766 33 HOH HOH . F 6 HOH A 67 767 54 HOH HOH . F 6 HOH A 68 768 63 HOH HOH . F 6 HOH A 69 769 22 HOH HOH . F 6 HOH A 70 770 3 HOH HOH . F 6 HOH A 71 771 43 HOH HOH . F 6 HOH A 72 772 67 HOH HOH . F 6 HOH A 73 773 13 HOH HOH . F 6 HOH A 74 774 15 HOH HOH . F 6 HOH A 75 775 41 HOH HOH . F 6 HOH A 76 776 34 HOH HOH . F 6 HOH A 77 777 16 HOH HOH . F 6 HOH A 78 778 36 HOH HOH . F 6 HOH A 79 779 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.015 -19.767 -9.421 1 66.22 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -15.8 -22.665 -13.181 1 62.89 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.403 -26.588 -10.392 1 60.17 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.52 -23.756 -6.613 1 57.09 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -15.23 -20.2 -10.693 1 67.19 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -15.254 -19.381 -11.892 1 58.96 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -15.459 -20.21 -12.91 1 59.08 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -15.578 -21.567 -12.393 1 60.15 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -15.598 -19.857 -14.408 1 57.49 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -15.049 -17.855 -11.969 1 65.18 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.52 -17.711 -12.13 1 64.06 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -13.14 -16.257 -12.224 1 75.66 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -12.02 -15.916 -12.712 1 73.69 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -13.986 -15.428 -11.804 1 65.84 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -16.017 -23.943 -12.741 1 57.96 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -16.254 -25.09 -13.604 1 57.44 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.397 -26.165 -12.814 1 56.54 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -16.299 -25.733 -11.455 1 66.85 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -16.259 -25.031 -15.16 1 68.33 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -16.693 -27.648 -13.17 1 64.73 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -16.959 -28.086 -14.414 1 69.04 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -16.13 -26.172 -9.126 1 59.54 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -16.062 -27.035 -7.988 1 67.73 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.815 -26.28 -6.92 1 65.65 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.738 -24.882 -7.364 1 59.79 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -16.225 -28.562 -8.03 1 67.55 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.653 -26.913 -5.523 1 62.82 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -15.229 -26.236 -4.461 1 82.58 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.359 -22.471 -7.105 1 59.14 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -15.112 -21.315 -6.249 1 54.33 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -14.972 -20.222 -7.007 1 58.95 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -15.083 -20.649 -8.373 1 58.6 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -15.069 -21.366 -4.701 1 70.35 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.717 -18.746 -6.538 1 52.97 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -13.203 -18.571 -6.299 1 57.21 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -12.889 -17.242 -5.604 1 65.3 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -11.817 -17.129 -4.96 1 73.31 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -13.687 -16.273 -5.684 1 74.72 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.433 -21.526 -11.026 1 62.49 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -16.032 -24.36 -11.411 1 59.09 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -15.952 -24.857 -8.727 1 58.91 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.329 -22.025 -8.409 1 61.25 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.668 -23.193 -9.885 1 62.79 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #