data_6MA7
#
_model_server_result.job_id            RKydQTsGYRiHRduI0R11uw 
_model_server_result.datetime_utc      '2024-11-27 23:53:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ma7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6MA7 
#
_exptl.entry_id    6MA7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MA7 
_cell.length_a            76.378 
_cell.length_b            101.31 
_cell.length_c            127.319 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MA7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,4 
A,B,C,D,E,F 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -76.378 0 0 
3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.378 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N5 TPF . A TPF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 147 n n 
CHA C4D HEM doub 148 n n 
CHA HHA HEM sing 149 n n 
CHB C4A HEM sing 150 n n 
CHB C1B HEM doub 151 n n 
CHB HHB HEM sing 152 n n 
CHC C4B HEM sing 153 n n 
CHC C1C HEM doub 154 n n 
CHC HHC HEM sing 155 n n 
CHD C4C HEM doub 156 n n 
CHD C1D HEM sing 157 n n 
CHD HHD HEM sing 158 n n 
C1A C2A HEM doub 159 n y 
C1A NA HEM sing 160 n y 
C2A C3A HEM sing 161 n y 
C2A CAA HEM sing 162 n n 
C3A C4A HEM doub 163 n y 
C3A CMA HEM sing 164 n n 
C4A NA HEM sing 165 n y 
CMA HMA HEM sing 166 n n 
CMA HMAA HEM sing 167 n n 
CMA HMAB HEM sing 168 n n 
CAA CBA HEM sing 169 n n 
CAA HAA HEM sing 170 n n 
CAA HAAA HEM sing 171 n n 
CBA CGA HEM sing 172 n n 
CBA HBA HEM sing 173 n n 
CBA HBAA HEM sing 174 n n 
CGA O1A HEM doub 175 n n 
CGA O2A HEM sing 176 n n 
C1B C2B HEM sing 177 n n 
C1B NB HEM sing 178 n n 
C2B C3B HEM doub 179 n n 
C2B CMB HEM sing 180 n n 
C3B C4B HEM sing 181 n n 
C3B CAB HEM sing 182 n n 
C4B NB HEM doub 183 n n 
CMB HMB HEM sing 184 n n 
CMB HMBA HEM sing 185 n n 
CMB HMBB HEM sing 186 n n 
CAB CBB HEM doub 187 n n 
CAB HAB HEM sing 188 n n 
CBB HBB HEM sing 189 n n 
CBB HBBA HEM sing 190 n n 
C1C C2C HEM sing 191 n y 
C1C NC HEM sing 192 n y 
C2C C3C HEM doub 193 n y 
C2C CMC HEM sing 194 n n 
C3C C4C HEM sing 195 n y 
C3C CAC HEM sing 196 n n 
C4C NC HEM sing 197 n y 
CMC HMC HEM sing 198 n n 
CMC HMCA HEM sing 199 n n 
CMC HMCB HEM sing 200 n n 
CAC CBC HEM doub 201 n n 
CAC HAC HEM sing 202 n n 
CBC HBC HEM sing 203 n n 
CBC HBCA HEM sing 204 n n 
C1D C2D HEM sing 205 n n 
C1D ND HEM doub 206 n n 
C2D C3D HEM doub 207 n n 
C2D CMD HEM sing 208 n n 
C3D C4D HEM sing 209 n n 
C3D CAD HEM sing 210 n n 
C4D ND HEM sing 211 n n 
CMD HMD HEM sing 212 n n 
CMD HMDA HEM sing 213 n n 
CMD HMDB HEM sing 214 n n 
CAD CBD HEM sing 215 n n 
CAD HAD HEM sing 216 n n 
CAD HADA HEM sing 217 n n 
CBD CGD HEM sing 218 n n 
CBD HBD HEM sing 219 n n 
CBD HBDA HEM sing 220 n n 
CGD O1D HEM doub 221 n n 
CGD O2D HEM sing 222 n n 
O2A H2A HEM sing 223 n n 
O2D H2D HEM sing 224 n n 
FE NA HEM sing 225 n n 
FE NB HEM sing 226 n n 
FE NC HEM sing 227 n n 
FE ND HEM sing 228 n n 
#
_atom_sites.entry_id                     6MA7 
_atom_sites.fract_transf_matrix[1][1]    0.013093 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009871 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 TPF A 1 602 700 TPF FLU . 
D 4 DMS A 1 603 800 DMS DMS . 
E 5 EDO A 1 604 900 EDO EDO . 
F 6 HOH A 1 701 87 HOH HOH . 
F 6 HOH A 2 702 40 HOH HOH . 
F 6 HOH A 3 703 11 HOH HOH . 
F 6 HOH A 4 704 46 HOH HOH . 
F 6 HOH A 5 705 71 HOH HOH . 
F 6 HOH A 6 706 25 HOH HOH . 
F 6 HOH A 7 707 49 HOH HOH . 
F 6 HOH A 8 708 17 HOH HOH . 
F 6 HOH A 9 709 58 HOH HOH . 
F 6 HOH A 10 710 44 HOH HOH . 
F 6 HOH A 11 711 16 HOH HOH . 
F 6 HOH A 12 712 31 HOH HOH . 
F 6 HOH A 13 713 19 HOH HOH . 
F 6 HOH A 14 714 29 HOH HOH . 
F 6 HOH A 15 715 9 HOH HOH . 
F 6 HOH A 16 716 91 HOH HOH . 
F 6 HOH A 17 717 12 HOH HOH . 
F 6 HOH A 18 718 84 HOH HOH . 
F 6 HOH A 19 719 79 HOH HOH . 
F 6 HOH A 20 720 18 HOH HOH . 
F 6 HOH A 21 721 28 HOH HOH . 
F 6 HOH A 22 722 57 HOH HOH . 
F 6 HOH A 23 723 51 HOH HOH . 
F 6 HOH A 24 724 1 HOH HOH . 
F 6 HOH A 25 725 50 HOH HOH . 
F 6 HOH A 26 726 32 HOH HOH . 
F 6 HOH A 27 727 42 HOH HOH . 
F 6 HOH A 28 728 26 HOH HOH . 
F 6 HOH A 29 729 20 HOH HOH . 
F 6 HOH A 30 730 3 HOH HOH . 
F 6 HOH A 31 731 81 HOH HOH . 
F 6 HOH A 32 732 35 HOH HOH . 
F 6 HOH A 33 733 7 HOH HOH . 
F 6 HOH A 34 734 82 HOH HOH . 
F 6 HOH A 35 735 14 HOH HOH . 
F 6 HOH A 36 736 15 HOH HOH . 
F 6 HOH A 37 737 76 HOH HOH . 
F 6 HOH A 38 738 33 HOH HOH . 
F 6 HOH A 39 739 27 HOH HOH . 
F 6 HOH A 40 740 13 HOH HOH . 
F 6 HOH A 41 741 36 HOH HOH . 
F 6 HOH A 42 742 52 HOH HOH . 
F 6 HOH A 43 743 85 HOH HOH . 
F 6 HOH A 44 744 70 HOH HOH . 
F 6 HOH A 45 745 5 HOH HOH . 
F 6 HOH A 46 746 54 HOH HOH . 
F 6 HOH A 47 747 77 HOH HOH . 
F 6 HOH A 48 748 38 HOH HOH . 
F 6 HOH A 49 749 2 HOH HOH . 
F 6 HOH A 50 750 45 HOH HOH . 
F 6 HOH A 51 751 6 HOH HOH . 
F 6 HOH A 52 752 78 HOH HOH . 
F 6 HOH A 53 753 83 HOH HOH . 
F 6 HOH A 54 754 21 HOH HOH . 
F 6 HOH A 55 755 63 HOH HOH . 
F 6 HOH A 56 756 22 HOH HOH . 
F 6 HOH A 57 757 39 HOH HOH . 
F 6 HOH A 58 758 24 HOH HOH . 
F 6 HOH A 59 759 90 HOH HOH . 
F 6 HOH A 60 760 4 HOH HOH . 
F 6 HOH A 61 761 10 HOH HOH . 
F 6 HOH A 62 762 66 HOH HOH . 
F 6 HOH A 63 763 30 HOH HOH . 
F 6 HOH A 64 764 62 HOH HOH . 
F 6 HOH A 65 765 61 HOH HOH . 
F 6 HOH A 66 766 80 HOH HOH . 
F 6 HOH A 67 767 89 HOH HOH . 
F 6 HOH A 68 768 88 HOH HOH . 
F 6 HOH A 69 769 23 HOH HOH . 
F 6 HOH A 70 770 48 HOH HOH . 
F 6 HOH A 71 771 8 HOH HOH . 
F 6 HOH A 72 772 65 HOH HOH . 
F 6 HOH A 73 773 60 HOH HOH . 
F 6 HOH A 74 774 74 HOH HOH . 
F 6 HOH A 75 775 56 HOH HOH . 
F 6 HOH A 76 776 69 HOH HOH . 
F 6 HOH A 77 777 43 HOH HOH . 
F 6 HOH A 78 778 59 HOH HOH . 
F 6 HOH A 79 779 93 HOH HOH . 
F 6 HOH A 80 780 41 HOH HOH . 
F 6 HOH A 81 781 92 HOH HOH . 
F 6 HOH A 82 782 75 HOH HOH . 
F 6 HOH A 83 783 34 HOH HOH . 
F 6 HOH A 84 784 47 HOH HOH . 
F 6 HOH A 85 785 64 HOH HOH . 
F 6 HOH A 86 786 55 HOH HOH . 
F 6 HOH A 87 787 72 HOH HOH . 
F 6 HOH A 88 788 73 HOH HOH . 
F 6 HOH A 89 789 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.3 -19.651 -9.279 1 42.5 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -16.18 -22.481 -13.088 1 45.45 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.854 -26.224 -10.126 1 35.75 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.649 -23.507 -6.308 1 43.62 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.509 -20.056 -10.578 1 42.15 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.518 -19.238 -11.778 1 46.5 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.733 -20.026 -12.811 1 42.49 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.903 -21.369 -12.316 1 44.19 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.826 -19.596 -14.292 1 39.89 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.282 -17.727 -11.894 1 39.86 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.755 -17.593 -12.026 1 52.88 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.314 -16.152 -12.144 1 53.09 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.19 -15.92 -12.664 1 57.1 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -14.083 -15.262 -11.7 1 49.84 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.463 -23.722 -12.601 1 47.95 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.835 -24.87 -13.408 1 47.3 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -17.046 -25.901 -12.589 1 48.13 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.776 -25.429 -11.25 1 46.99 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.992 -24.811 -14.921 1 37.89 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -17.445 -27.377 -12.886 1 45.31 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -17.179 -27.997 -14.039 1 50.76 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.479 -25.841 -8.853 1 43.24 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.271 -26.749 -7.76 1 45.74 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.932 -26.025 -6.697 1 47.47 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.914 -24.624 -7.071 1 43.36 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.405 -28.297 -7.855 1 48.44 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.643 -26.696 -5.357 1 49.55 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.085 -26.077 -4.356 1 51.79 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.524 -22.211 -6.8 1 43.18 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.288 -21.04 -5.975 1 40.92 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.177 -19.978 -6.784 1 49.17 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.325 -20.443 -8.156 1 42.18 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -15.198 -21.086 -4.451 1 39.89 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.921 -18.509 -6.356 1 40.46 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.413 -18.331 -6.189 1 42.95 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -13.074 -16.978 -5.55 1 46.17 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -11.96 -16.827 -4.979 1 50.04 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -13.9 -16.036 -5.617 1 50.34 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.774 -21.34 -10.952 1 45.25 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.425 -24.088 -11.298 1 43.38 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -16.265 -24.55 -8.382 1 41.99 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.565 -21.798 -8.124 1 37.4 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -16.01 -22.914 -9.665 1 43.96 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#