data_6MA8
#
_model_server_result.job_id            z3aZoxUb_P4rYuqZy75ZzQ 
_model_server_result.datetime_utc      '2024-11-24 07:42:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ma8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":609}' 
#
_entry.id    6MA8 
#
_exptl.entry_id    6MA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MA8 
_cell.length_a            77.22 
_cell.length_b            99.62 
_cell.length_c            131.88 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 N O HOH . A HOH 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     6MA8 
_atom_sites.fract_transf_matrix[1][1]    0.01295 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010038 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 GOL A 1 602 600 GOL GOL . 
D 3 GOL A 1 603 601 GOL GOL . 
E 4 PMF A 1 604 700 PMF P9X . 
F 5 EDO A 1 605 801 EDO EDO . 
G 5 EDO A 1 606 802 EDO EDO . 
H 5 EDO A 1 607 803 EDO EDO . 
I 5 EDO A 1 608 804 EDO EDO . 
J 5 EDO A 1 609 805 EDO EDO . 
K 5 EDO A 1 610 806 EDO EDO . 
L 5 EDO A 1 611 807 EDO EDO . 
M 6 DMS A 1 612 900 DMS DMS . 
N 7 HOH A 1 701 226 HOH HOH . 
N 7 HOH A 2 702 59 HOH HOH . 
N 7 HOH A 3 703 146 HOH HOH . 
N 7 HOH A 4 704 202 HOH HOH . 
N 7 HOH A 5 705 168 HOH HOH . 
N 7 HOH A 6 706 211 HOH HOH . 
N 7 HOH A 7 707 214 HOH HOH . 
N 7 HOH A 8 708 26 HOH HOH . 
N 7 HOH A 9 709 161 HOH HOH . 
N 7 HOH A 10 710 154 HOH HOH . 
N 7 HOH A 11 711 104 HOH HOH . 
N 7 HOH A 12 712 174 HOH HOH . 
N 7 HOH A 13 713 58 HOH HOH . 
N 7 HOH A 14 714 19 HOH HOH . 
N 7 HOH A 15 715 33 HOH HOH . 
N 7 HOH A 16 716 195 HOH HOH . 
N 7 HOH A 17 717 63 HOH HOH . 
N 7 HOH A 18 718 110 HOH HOH . 
N 7 HOH A 19 719 136 HOH HOH . 
N 7 HOH A 20 720 109 HOH HOH . 
N 7 HOH A 21 721 112 HOH HOH . 
N 7 HOH A 22 722 135 HOH HOH . 
N 7 HOH A 23 723 229 HOH HOH . 
N 7 HOH A 24 724 118 HOH HOH . 
N 7 HOH A 25 725 46 HOH HOH . 
N 7 HOH A 26 726 166 HOH HOH . 
N 7 HOH A 27 727 45 HOH HOH . 
N 7 HOH A 28 728 32 HOH HOH . 
N 7 HOH A 29 729 73 HOH HOH . 
N 7 HOH A 30 730 216 HOH HOH . 
N 7 HOH A 31 731 9 HOH HOH . 
N 7 HOH A 32 732 81 HOH HOH . 
N 7 HOH A 33 733 191 HOH HOH . 
N 7 HOH A 34 734 79 HOH HOH . 
N 7 HOH A 35 735 178 HOH HOH . 
N 7 HOH A 36 736 205 HOH HOH . 
N 7 HOH A 37 737 6 HOH HOH . 
N 7 HOH A 38 738 78 HOH HOH . 
N 7 HOH A 39 739 90 HOH HOH . 
N 7 HOH A 40 740 85 HOH HOH . 
N 7 HOH A 41 741 93 HOH HOH . 
N 7 HOH A 42 742 52 HOH HOH . 
N 7 HOH A 43 743 12 HOH HOH . 
N 7 HOH A 44 744 208 HOH HOH . 
N 7 HOH A 45 745 203 HOH HOH . 
N 7 HOH A 46 746 186 HOH HOH . 
N 7 HOH A 47 747 194 HOH HOH . 
N 7 HOH A 48 748 155 HOH HOH . 
N 7 HOH A 49 749 122 HOH HOH . 
N 7 HOH A 50 750 232 HOH HOH . 
N 7 HOH A 51 751 3 HOH HOH . 
N 7 HOH A 52 752 230 HOH HOH . 
N 7 HOH A 53 753 25 HOH HOH . 
N 7 HOH A 54 754 22 HOH HOH . 
N 7 HOH A 55 755 4 HOH HOH . 
N 7 HOH A 56 756 213 HOH HOH . 
N 7 HOH A 57 757 56 HOH HOH . 
N 7 HOH A 58 758 10 HOH HOH . 
N 7 HOH A 59 759 41 HOH HOH . 
N 7 HOH A 60 760 17 HOH HOH . 
N 7 HOH A 61 761 5 HOH HOH . 
N 7 HOH A 62 762 111 HOH HOH . 
N 7 HOH A 63 763 11 HOH HOH . 
N 7 HOH A 64 764 62 HOH HOH . 
N 7 HOH A 65 765 199 HOH HOH . 
N 7 HOH A 66 766 14 HOH HOH . 
N 7 HOH A 67 767 36 HOH HOH . 
N 7 HOH A 68 768 34 HOH HOH . 
N 7 HOH A 69 769 13 HOH HOH . 
N 7 HOH A 70 770 156 HOH HOH . 
N 7 HOH A 71 771 140 HOH HOH . 
N 7 HOH A 72 772 91 HOH HOH . 
N 7 HOH A 73 773 125 HOH HOH . 
N 7 HOH A 74 774 2 HOH HOH . 
N 7 HOH A 75 775 94 HOH HOH . 
N 7 HOH A 76 776 130 HOH HOH . 
N 7 HOH A 77 777 200 HOH HOH . 
N 7 HOH A 78 778 29 HOH HOH . 
N 7 HOH A 79 779 37 HOH HOH . 
N 7 HOH A 80 780 119 HOH HOH . 
N 7 HOH A 81 781 1 HOH HOH . 
N 7 HOH A 82 782 223 HOH HOH . 
N 7 HOH A 83 783 39 HOH HOH . 
N 7 HOH A 84 784 7 HOH HOH . 
N 7 HOH A 85 785 82 HOH HOH . 
N 7 HOH A 86 786 137 HOH HOH . 
N 7 HOH A 87 787 120 HOH HOH . 
N 7 HOH A 88 788 201 HOH HOH . 
N 7 HOH A 89 789 23 HOH HOH . 
N 7 HOH A 90 790 8 HOH HOH . 
N 7 HOH A 91 791 228 HOH HOH . 
N 7 HOH A 92 792 64 HOH HOH . 
N 7 HOH A 93 793 100 HOH HOH . 
N 7 HOH A 94 794 145 HOH HOH . 
N 7 HOH A 95 795 176 HOH HOH . 
N 7 HOH A 96 796 67 HOH HOH . 
N 7 HOH A 97 797 127 HOH HOH . 
N 7 HOH A 98 798 183 HOH HOH . 
N 7 HOH A 99 799 187 HOH HOH . 
N 7 HOH A 100 800 60 HOH HOH . 
N 7 HOH A 101 801 115 HOH HOH . 
N 7 HOH A 102 802 144 HOH HOH . 
N 7 HOH A 103 803 193 HOH HOH . 
N 7 HOH A 104 804 35 HOH HOH . 
N 7 HOH A 105 805 113 HOH HOH . 
N 7 HOH A 106 806 51 HOH HOH . 
N 7 HOH A 107 807 210 HOH HOH . 
N 7 HOH A 108 808 83 HOH HOH . 
N 7 HOH A 109 809 74 HOH HOH . 
N 7 HOH A 110 810 184 HOH HOH . 
N 7 HOH A 111 811 99 HOH HOH . 
N 7 HOH A 112 812 76 HOH HOH . 
N 7 HOH A 113 813 66 HOH HOH . 
N 7 HOH A 114 814 30 HOH HOH . 
N 7 HOH A 115 815 198 HOH HOH . 
N 7 HOH A 116 816 215 HOH HOH . 
N 7 HOH A 117 817 133 HOH HOH . 
N 7 HOH A 118 818 20 HOH HOH . 
N 7 HOH A 119 819 212 HOH HOH . 
N 7 HOH A 120 820 132 HOH HOH . 
N 7 HOH A 121 821 48 HOH HOH . 
N 7 HOH A 122 822 80 HOH HOH . 
N 7 HOH A 123 823 15 HOH HOH . 
N 7 HOH A 124 824 68 HOH HOH . 
N 7 HOH A 125 825 162 HOH HOH . 
N 7 HOH A 126 826 84 HOH HOH . 
N 7 HOH A 127 827 196 HOH HOH . 
N 7 HOH A 128 828 177 HOH HOH . 
N 7 HOH A 129 829 44 HOH HOH . 
N 7 HOH A 130 830 165 HOH HOH . 
N 7 HOH A 131 831 173 HOH HOH . 
N 7 HOH A 132 832 171 HOH HOH . 
N 7 HOH A 133 833 24 HOH HOH . 
N 7 HOH A 134 834 47 HOH HOH . 
N 7 HOH A 135 835 151 HOH HOH . 
N 7 HOH A 136 836 28 HOH HOH . 
N 7 HOH A 137 837 160 HOH HOH . 
N 7 HOH A 138 838 55 HOH HOH . 
N 7 HOH A 139 839 27 HOH HOH . 
N 7 HOH A 140 840 126 HOH HOH . 
N 7 HOH A 141 841 134 HOH HOH . 
N 7 HOH A 142 842 209 HOH HOH . 
N 7 HOH A 143 843 172 HOH HOH . 
N 7 HOH A 144 844 69 HOH HOH . 
N 7 HOH A 145 845 102 HOH HOH . 
N 7 HOH A 146 846 77 HOH HOH . 
N 7 HOH A 147 847 148 HOH HOH . 
N 7 HOH A 148 848 31 HOH HOH . 
N 7 HOH A 149 849 75 HOH HOH . 
N 7 HOH A 150 850 141 HOH HOH . 
N 7 HOH A 151 851 49 HOH HOH . 
N 7 HOH A 152 852 190 HOH HOH . 
N 7 HOH A 153 853 108 HOH HOH . 
N 7 HOH A 154 854 179 HOH HOH . 
N 7 HOH A 155 855 21 HOH HOH . 
N 7 HOH A 156 856 42 HOH HOH . 
N 7 HOH A 157 857 72 HOH HOH . 
N 7 HOH A 158 858 95 HOH HOH . 
N 7 HOH A 159 859 57 HOH HOH . 
N 7 HOH A 160 860 129 HOH HOH . 
N 7 HOH A 161 861 163 HOH HOH . 
N 7 HOH A 162 862 159 HOH HOH . 
N 7 HOH A 163 863 231 HOH HOH . 
N 7 HOH A 164 864 206 HOH HOH . 
N 7 HOH A 165 865 152 HOH HOH . 
N 7 HOH A 166 866 88 HOH HOH . 
N 7 HOH A 167 867 114 HOH HOH . 
N 7 HOH A 168 868 128 HOH HOH . 
N 7 HOH A 169 869 96 HOH HOH . 
N 7 HOH A 170 870 180 HOH HOH . 
N 7 HOH A 171 871 50 HOH HOH . 
N 7 HOH A 172 872 227 HOH HOH . 
N 7 HOH A 173 873 188 HOH HOH . 
N 7 HOH A 174 874 225 HOH HOH . 
N 7 HOH A 175 875 92 HOH HOH . 
N 7 HOH A 176 876 18 HOH HOH . 
N 7 HOH A 177 877 123 HOH HOH . 
N 7 HOH A 178 878 217 HOH HOH . 
N 7 HOH A 179 879 38 HOH HOH . 
N 7 HOH A 180 880 207 HOH HOH . 
N 7 HOH A 181 881 107 HOH HOH . 
N 7 HOH A 182 882 121 HOH HOH . 
N 7 HOH A 183 883 116 HOH HOH . 
N 7 HOH A 184 884 71 HOH HOH . 
N 7 HOH A 185 885 101 HOH HOH . 
N 7 HOH A 186 886 181 HOH HOH . 
N 7 HOH A 187 887 175 HOH HOH . 
N 7 HOH A 188 888 53 HOH HOH . 
N 7 HOH A 189 889 150 HOH HOH . 
N 7 HOH A 190 890 219 HOH HOH . 
N 7 HOH A 191 891 40 HOH HOH . 
N 7 HOH A 192 892 97 HOH HOH . 
N 7 HOH A 193 893 147 HOH HOH . 
N 7 HOH A 194 894 70 HOH HOH . 
N 7 HOH A 195 895 153 HOH HOH . 
N 7 HOH A 196 896 61 HOH HOH . 
N 7 HOH A 197 897 170 HOH HOH . 
N 7 HOH A 198 898 204 HOH HOH . 
N 7 HOH A 199 899 87 HOH HOH . 
N 7 HOH A 200 900 218 HOH HOH . 
N 7 HOH A 201 901 158 HOH HOH . 
N 7 HOH A 202 902 98 HOH HOH . 
N 7 HOH A 203 903 189 HOH HOH . 
N 7 HOH A 204 904 224 HOH HOH . 
N 7 HOH A 205 905 221 HOH HOH . 
N 7 HOH A 206 906 54 HOH HOH . 
N 7 HOH A 207 907 185 HOH HOH . 
N 7 HOH A 208 908 16 HOH HOH . 
N 7 HOH A 209 909 192 HOH HOH . 
N 7 HOH A 210 910 143 HOH HOH . 
N 7 HOH A 211 911 164 HOH HOH . 
N 7 HOH A 212 912 106 HOH HOH . 
N 7 HOH A 213 913 157 HOH HOH . 
N 7 HOH A 214 914 197 HOH HOH . 
N 7 HOH A 215 915 182 HOH HOH . 
N 7 HOH A 216 916 89 HOH HOH . 
N 7 HOH A 217 917 86 HOH HOH . 
N 7 HOH A 218 918 139 HOH HOH . 
N 7 HOH A 219 919 65 HOH HOH . 
N 7 HOH A 220 920 142 HOH HOH . 
N 7 HOH A 221 921 105 HOH HOH . 
N 7 HOH A 222 922 138 HOH HOH . 
N 7 HOH A 223 923 124 HOH HOH . 
N 7 HOH A 224 924 131 HOH HOH . 
N 7 HOH A 225 925 222 HOH HOH . 
N 7 HOH A 226 926 103 HOH HOH . 
N 7 HOH A 227 927 149 HOH HOH . 
N 7 HOH A 228 928 220 HOH HOH . 
N 7 HOH A 229 929 117 HOH HOH . 
N 7 HOH A 230 930 167 HOH HOH . 
N 7 HOH A 231 931 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 5 -29.495 -31.032 -12.625 1 79.07 ? C1 EDO 609 A 1 
HETATM 2 O O1 EDO . . . J 5 -28.608 -32.012 -13.186 1 78.01 ? O1 EDO 609 A 1 
HETATM 3 C C2 EDO . . . J 5 -30.896 -31.27 -13.174 1 76.33 ? C2 EDO 609 A 1 
HETATM 4 O O2 EDO . . . J 5 -31.053 -32.671 -13.42 1 75.31 ? O2 EDO 609 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#