data_6MAK # _model_server_result.job_id Go6Brdamwz-KYz_1DufPTA _model_server_result.datetime_utc '2024-11-24 17:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 6MAK # _exptl.entry_id 6MAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.59 _cell.angle_gamma 90 _cell.entry_id 6MAK _cell.length_a 87.628 _cell.length_b 39.026 _cell.length_c 107.765 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 99 A HIS 431 1_555 A N ALY 100 A ALY 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C ALY 100 A ALY 432 1_555 A N THR 101 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A SG CYS 36 A CYS 368 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 39 A CYS 371 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A NE2 HIS 52 A HIS 384 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 A SG CYS 56 A CYS 388 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6MAK _atom_sites.fract_transf_matrix[1][1] 0.011412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001929 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 703 ZN ZN . D 4 ACO A 1 702 702 ACO ACO . E 5 HOH A 1 801 14 HOH HOH . E 5 HOH A 2 802 13 HOH HOH . E 5 HOH A 3 803 8 HOH HOH . E 5 HOH A 4 804 3 HOH HOH . E 5 HOH A 5 805 11 HOH HOH . E 5 HOH A 6 806 18 HOH HOH . E 5 HOH A 7 807 19 HOH HOH . E 5 HOH A 8 808 5 HOH HOH . E 5 HOH A 9 809 20 HOH HOH . E 5 HOH A 10 810 7 HOH HOH . E 5 HOH A 11 811 4 HOH HOH . E 5 HOH A 12 812 16 HOH HOH . E 5 HOH A 13 813 17 HOH HOH . E 5 HOH A 14 814 12 HOH HOH . E 5 HOH A 15 815 6 HOH HOH . E 5 HOH A 16 816 22 HOH HOH . E 5 HOH A 17 817 1 HOH HOH . E 5 HOH A 18 818 10 HOH HOH . E 5 HOH A 19 819 9 HOH HOH . F 5 HOH B 1 101 15 HOH HOH . F 5 HOH B 2 102 2 HOH HOH . F 5 HOH B 3 103 21 HOH HOH . F 5 HOH B 4 104 24 HOH HOH . F 5 HOH B 5 105 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . D 4 -18.159 2.56 -4.603 1 78.89 ? N1A ACO 702 A 1 HETATM 2 C C2A ACO . . . D 4 -17.7 2.418 -3.338 1 78.1 ? C2A ACO 702 A 1 HETATM 3 N N3A ACO . . . D 4 -18.176 1.475 -2.494 1 78.49 ? N3A ACO 702 A 1 HETATM 4 C C4A ACO . . . D 4 -19.159 0.608 -2.873 1 77.49 ? C4A ACO 702 A 1 HETATM 5 C C5A ACO . . . D 4 -19.702 0.701 -4.241 1 81.07 ? C5A ACO 702 A 1 HETATM 6 C C6A ACO . . . D 4 -19.132 1.769 -5.115 1 80.57 ? C6A ACO 702 A 1 HETATM 7 N N6A ACO . . . D 4 -19.571 1.942 -6.38 1 82.12 ? N6A ACO 702 A 1 HETATM 8 N N7A ACO . . . D 4 -20.638 -0.271 -4.346 1 73.7 ? N7A ACO 702 A 1 HETATM 9 C C8A ACO . . . D 4 -20.706 -0.928 -3.161 1 68.33 ? C8A ACO 702 A 1 HETATM 10 N N9A ACO . . . D 4 -19.826 -0.396 -2.282 1 75.29 ? N9A ACO 702 A 1 HETATM 11 C C1B ACO . . . D 4 -19.568 -0.857 -0.89 1 69.02 ? C1B ACO 702 A 1 HETATM 12 C C2B ACO . . . D 4 -20.62 -0.391 0.102 1 70.95 ? C2B ACO 702 A 1 HETATM 13 O O2B ACO . . . D 4 -20.313 0.908 0.588 1 65.92 ? O2B ACO 702 A 1 HETATM 14 C C3B ACO . . . D 4 -20.522 -1.465 1.177 1 71.49 ? C3B ACO 702 A 1 HETATM 15 O O3B ACO . . . D 4 -19.361 -1.304 2.005 1 73.07 ? O3B ACO 702 A 1 HETATM 16 P P3B ACO . . . D 4 -19.225 -0.412 3.365 1 75.21 ? P3B ACO 702 A 1 HETATM 17 O O7A ACO . . . D 4 -20.351 -0.816 4.282 1 73.91 ? O7A ACO 702 A 1 HETATM 18 O O8A ACO . . . D 4 -17.843 -0.797 3.833 1 78.37 ? O8A ACO 702 A 1 HETATM 19 O O9A ACO . . . D 4 -19.344 1.023 2.9 1 86.64 ? O9A ACO 702 A 1 HETATM 20 C C4B ACO . . . D 4 -20.299 -2.726 0.349 1 66.02 ? C4B ACO 702 A 1 HETATM 21 O O4B ACO . . . D 4 -19.553 -2.288 -0.804 1 65.42 ? O4B ACO 702 A 1 HETATM 22 C C5B ACO . . . D 4 -21.544 -3.486 -0.143 1 59.67 ? C5B ACO 702 A 1 HETATM 23 O O5B ACO . . . D 4 -22.731 -2.676 -0.211 1 50.89 ? O5B ACO 702 A 1 HETATM 24 P P1A ACO . . . D 4 -24.089 -3.47 -0.509 1 46.77 ? P1A ACO 702 A 1 HETATM 25 O O1A ACO . . . D 4 -24.324 -4.537 0.496 1 52.06 ? O1A ACO 702 A 1 HETATM 26 O O2A ACO . . . D 4 -25.223 -2.511 -0.762 1 46.15 ? O2A ACO 702 A 1 HETATM 27 O O3A ACO . . . D 4 -23.589 -4.101 -1.91 1 46.61 ? O3A ACO 702 A 1 HETATM 28 P P2A ACO . . . D 4 -24.256 -3.9 -3.366 1 48.07 ? P2A ACO 702 A 1 HETATM 29 O O4A ACO . . . D 4 -25.706 -4.252 -3.279 1 48.25 ? O4A ACO 702 A 1 HETATM 30 O O5A ACO . . . D 4 -23.918 -2.558 -3.952 1 50.76 ? O5A ACO 702 A 1 HETATM 31 O O6A ACO . . . D 4 -23.553 -5.083 -4.205 1 47.78 ? O6A ACO 702 A 1 HETATM 32 C CBP ACO . . . D 4 -21.905 -6.054 -5.614 1 45.64 ? CBP ACO 702 A 1 HETATM 33 C CCP ACO . . . D 4 -22.181 -5.406 -4.262 1 45.41 ? CCP ACO 702 A 1 HETATM 34 C CDP ACO . . . D 4 -22.728 -7.321 -5.699 1 40.81 ? CDP ACO 702 A 1 HETATM 35 C CEP ACO . . . D 4 -20.413 -6.404 -5.686 1 47.39 ? CEP ACO 702 A 1 HETATM 36 C CAP ACO . . . D 4 -22.26 -5.035 -6.72 1 44.72 ? CAP ACO 702 A 1 HETATM 37 O OAP ACO . . . D 4 -21.23 -4.043 -6.718 1 49.15 ? OAP ACO 702 A 1 HETATM 38 C C9P ACO . . . D 4 -22.307 -5.54 -8.137 1 44.13 ? C9P ACO 702 A 1 HETATM 39 O O9P ACO . . . D 4 -23.295 -6.095 -8.554 1 44.13 ? O9P ACO 702 A 1 HETATM 40 N N8P ACO . . . D 4 -21.257 -5.295 -8.919 1 43.18 ? N8P ACO 702 A 1 HETATM 41 C C7P ACO . . . D 4 -21.207 -5.576 -10.345 1 39.79 ? C7P ACO 702 A 1 HETATM 42 C C6P ACO . . . D 4 -20.829 -7.017 -10.644 1 44.93 ? C6P ACO 702 A 1 HETATM 43 C C5P ACO . . . D 4 -19.652 -7.416 -9.774 1 47.79 ? C5P ACO 702 A 1 HETATM 44 O O5P ACO . . . D 4 -18.644 -6.721 -9.791 1 46.66 ? O5P ACO 702 A 1 HETATM 45 N N4P ACO . . . D 4 -19.77 -8.547 -9.029 1 51.01 ? N4P ACO 702 A 1 HETATM 46 C C3P ACO . . . D 4 -18.682 -9.104 -8.249 1 46.85 ? C3P ACO 702 A 1 HETATM 47 C C2P ACO . . . D 4 -17.824 -9.971 -9.173 1 60.01 ? C2P ACO 702 A 1 HETATM 48 S S1P ACO . . . D 4 -16.643 -10.968 -8.285 1 65.62 ? S1P ACO 702 A 1 HETATM 49 C C ACO . . . D 4 -17.449 -12.442 -8.186 1 55.77 ? C ACO 702 A 1 HETATM 50 O O ACO . . . D 4 -18.611 -12.521 -8.543 1 61.04 ? O ACO 702 A 1 HETATM 51 C CH3 ACO . . . D 4 -16.749 -13.655 -7.668 1 51.33 ? CH3 ACO 702 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #