data_6MAT # _model_server_result.job_id 6NGBTTtN60nnifGnQUKWDA _model_server_result.datetime_utc '2024-10-10 23:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":901}' # _entry.id 6MAT # _exptl.entry_id 6MAT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6MAT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 901 901 ATP ATP . I 3 ATP A 1 902 902 ATP ATP . J 3 ATP B 1 901 901 ATP ATP . K 3 ATP B 1 902 902 ATP ATP . L 3 ATP C 1 901 901 ATP ATP . M 3 ATP C 1 902 902 ATP ATP . N 3 ATP D 1 901 901 ATP ATP . O 3 ATP D 1 902 902 ATP ATP . P 3 ATP E 1 901 902 ATP ATP . Q 3 ATP F 1 901 901 ATP ATP . R 3 ATP F 1 902 902 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 3 154.212 116.183 142.142 1 63.53 ? PG ATP 901 E 1 HETATM 2 O O1G ATP . . . P 3 153.099 116.015 141.136 1 63.66 ? O1G ATP 901 E 1 HETATM 3 O O2G ATP . . . P 3 153.803 115.951 143.578 1 63.79 ? O2G ATP 901 E 1 HETATM 4 O O3G ATP . . . P 3 155.067 117.41 141.934 1 64.12 ? O3G ATP 901 E 1 HETATM 5 P PB ATP . . . P 3 156.787 115.174 142.103 1 61.81 ? PB ATP 901 E 1 HETATM 6 O O1B ATP . . . P 3 157.46 115.652 140.845 1 61.66 ? O1B ATP 901 E 1 HETATM 7 O O2B ATP . . . P 3 156.958 115.937 143.383 1 61.82 ? O2B ATP 901 E 1 HETATM 8 O O3B ATP . . . P 3 155.217 114.973 141.825 1 62.62 ? O3B ATP 901 E 1 HETATM 9 P PA ATP . . . P 3 157.424 113.11 143.835 1 60.75 ? PA ATP 901 E 1 HETATM 10 O O1A ATP . . . P 3 158.611 113.772 144.462 1 60.53 ? O1A ATP 901 E 1 HETATM 11 O O2A ATP . . . P 3 156.081 113.148 144.52 1 60.93 ? O2A ATP 901 E 1 HETATM 12 O O3A ATP . . . P 3 157.25 113.668 142.35 1 61.21 ? O3A ATP 901 E 1 HETATM 13 O O5' ATP . . . P 3 157.851 111.601 143.519 1 60.64 ? O5' ATP 901 E 1 HETATM 14 C C5' ATP . . . P 3 156.836 110.613 143.391 1 60.34 ? C5' ATP 901 E 1 HETATM 15 C C4' ATP . . . P 3 157.433 109.23 143.632 1 59.98 ? C4' ATP 901 E 1 HETATM 16 O O4' ATP . . . P 3 157.931 108.656 142.43 1 59.53 ? O4' ATP 901 E 1 HETATM 17 C C3' ATP . . . P 3 158.549 109.189 144.671 1 59.8 ? C3' ATP 901 E 1 HETATM 18 O O3' ATP . . . P 3 158.074 108.764 145.958 1 59.89 ? O3' ATP 901 E 1 HETATM 19 C C2' ATP . . . P 3 159.559 108.198 144.122 1 59.42 ? C2' ATP 901 E 1 HETATM 20 O O2' ATP . . . P 3 159.426 106.935 144.786 1 59.12 ? O2' ATP 901 E 1 HETATM 21 C C1' ATP . . . P 3 159.218 108.068 142.639 1 59.18 ? C1' ATP 901 E 1 HETATM 22 N N9 ATP . . . P 3 160.134 108.93 141.865 1 58.74 ? N9 ATP 901 E 1 HETATM 23 C C8 ATP . . . P 3 159.763 110.043 141.209 1 58.36 ? C8 ATP 901 E 1 HETATM 24 N N7 ATP . . . P 3 160.827 110.614 140.594 1 58.31 ? N7 ATP 901 E 1 HETATM 25 C C5 ATP . . . P 3 161.908 109.855 140.857 1 58.28 ? C5 ATP 901 E 1 HETATM 26 C C6 ATP . . . P 3 163.35 109.893 140.512 1 58.07 ? C6 ATP 901 E 1 HETATM 27 N N6 ATP . . . P 3 163.852 110.887 139.741 1 57.84 ? N6 ATP 901 E 1 HETATM 28 N N1 ATP . . . P 3 164.143 108.906 140.991 1 58.01 ? N1 ATP 901 E 1 HETATM 29 C C2 ATP . . . P 3 163.647 107.915 141.758 1 58.16 ? C2 ATP 901 E 1 HETATM 30 N N3 ATP . . . P 3 162.349 107.816 142.112 1 58.39 ? N3 ATP 901 E 1 HETATM 31 C C4 ATP . . . P 3 161.445 108.741 141.699 1 58.48 ? C4 ATP 901 E 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #