data_6MBL # _model_server_result.job_id irxkjKFmv7vbddCiVtl5Lw _model_server_result.datetime_utc '2025-03-26 16:33:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 6MBL # _exptl.entry_id 6MBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MBL _cell.length_a 56.557 _cell.length_b 92.83 _cell.length_c 111.635 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 6MBL _atom_sites.fract_transf_matrix[1][1] 0.017681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1001 1001 SAH SAH . D 4 EDO A 1 1002 501 EDO EDO . E 4 EDO A 1 1003 502 EDO EDO . F 4 EDO A 1 1004 503 EDO EDO . G 4 EDO A 1 1005 504 EDO EDO . H 4 EDO A 1 1006 505 EDO EDO . I 4 EDO A 1 1007 506 EDO EDO . J 4 EDO A 1 1008 507 EDO EDO . K 4 EDO A 1 1009 508 EDO EDO . L 4 EDO A 1 1010 509 EDO EDO . M 4 EDO A 1 1011 510 EDO EDO . N 5 HOH Y 1 101 42 HOH HOH . N 5 HOH Y 2 102 34 HOH HOH . N 5 HOH Y 3 103 66 HOH HOH . N 5 HOH Y 4 104 91 HOH HOH . N 5 HOH Y 5 105 37 HOH HOH . N 5 HOH Y 6 106 49 HOH HOH . N 5 HOH Y 7 107 7 HOH HOH . N 5 HOH Y 8 108 33 HOH HOH . N 5 HOH Y 9 109 135 HOH HOH . N 5 HOH Y 10 110 114 HOH HOH . N 5 HOH Y 11 111 144 HOH HOH . O 5 HOH A 1 1101 106 HOH HOH . O 5 HOH A 2 1102 123 HOH HOH . O 5 HOH A 3 1103 119 HOH HOH . O 5 HOH A 4 1104 44 HOH HOH . O 5 HOH A 5 1105 102 HOH HOH . O 5 HOH A 6 1106 100 HOH HOH . O 5 HOH A 7 1107 28 HOH HOH . O 5 HOH A 8 1108 39 HOH HOH . O 5 HOH A 9 1109 103 HOH HOH . O 5 HOH A 10 1110 84 HOH HOH . O 5 HOH A 11 1111 95 HOH HOH . O 5 HOH A 12 1112 69 HOH HOH . O 5 HOH A 13 1113 16 HOH HOH . O 5 HOH A 14 1114 27 HOH HOH . O 5 HOH A 15 1115 13 HOH HOH . O 5 HOH A 16 1116 68 HOH HOH . O 5 HOH A 17 1117 79 HOH HOH . O 5 HOH A 18 1118 74 HOH HOH . O 5 HOH A 19 1119 98 HOH HOH . O 5 HOH A 20 1120 82 HOH HOH . O 5 HOH A 21 1121 51 HOH HOH . O 5 HOH A 22 1122 88 HOH HOH . O 5 HOH A 23 1123 115 HOH HOH . O 5 HOH A 24 1124 35 HOH HOH . O 5 HOH A 25 1125 20 HOH HOH . O 5 HOH A 26 1126 29 HOH HOH . O 5 HOH A 27 1127 86 HOH HOH . O 5 HOH A 28 1128 136 HOH HOH . O 5 HOH A 29 1129 112 HOH HOH . O 5 HOH A 30 1130 85 HOH HOH . O 5 HOH A 31 1131 31 HOH HOH . O 5 HOH A 32 1132 92 HOH HOH . O 5 HOH A 33 1133 24 HOH HOH . O 5 HOH A 34 1134 52 HOH HOH . O 5 HOH A 35 1135 54 HOH HOH . O 5 HOH A 36 1136 62 HOH HOH . O 5 HOH A 37 1137 70 HOH HOH . O 5 HOH A 38 1138 124 HOH HOH . O 5 HOH A 39 1139 122 HOH HOH . O 5 HOH A 40 1140 131 HOH HOH . O 5 HOH A 41 1141 9 HOH HOH . O 5 HOH A 42 1142 47 HOH HOH . O 5 HOH A 43 1143 96 HOH HOH . O 5 HOH A 44 1144 60 HOH HOH . O 5 HOH A 45 1145 71 HOH HOH . O 5 HOH A 46 1146 23 HOH HOH . O 5 HOH A 47 1147 41 HOH HOH . O 5 HOH A 48 1148 46 HOH HOH . O 5 HOH A 49 1149 73 HOH HOH . O 5 HOH A 50 1150 132 HOH HOH . O 5 HOH A 51 1151 48 HOH HOH . O 5 HOH A 52 1152 58 HOH HOH . O 5 HOH A 53 1153 108 HOH HOH . O 5 HOH A 54 1154 130 HOH HOH . O 5 HOH A 55 1155 78 HOH HOH . O 5 HOH A 56 1156 30 HOH HOH . O 5 HOH A 57 1157 26 HOH HOH . O 5 HOH A 58 1158 90 HOH HOH . O 5 HOH A 59 1159 17 HOH HOH . O 5 HOH A 60 1160 113 HOH HOH . O 5 HOH A 61 1161 5 HOH HOH . O 5 HOH A 62 1162 32 HOH HOH . O 5 HOH A 63 1163 126 HOH HOH . O 5 HOH A 64 1164 2 HOH HOH . O 5 HOH A 65 1165 76 HOH HOH . O 5 HOH A 66 1166 43 HOH HOH . O 5 HOH A 67 1167 38 HOH HOH . O 5 HOH A 68 1168 15 HOH HOH . O 5 HOH A 69 1169 89 HOH HOH . O 5 HOH A 70 1170 8 HOH HOH . O 5 HOH A 71 1171 121 HOH HOH . O 5 HOH A 72 1172 142 HOH HOH . O 5 HOH A 73 1173 12 HOH HOH . O 5 HOH A 74 1174 129 HOH HOH . O 5 HOH A 75 1175 101 HOH HOH . O 5 HOH A 76 1176 61 HOH HOH . O 5 HOH A 77 1177 22 HOH HOH . O 5 HOH A 78 1178 56 HOH HOH . O 5 HOH A 79 1179 63 HOH HOH . O 5 HOH A 80 1180 45 HOH HOH . O 5 HOH A 81 1181 67 HOH HOH . O 5 HOH A 82 1182 99 HOH HOH . O 5 HOH A 83 1183 21 HOH HOH . O 5 HOH A 84 1184 81 HOH HOH . O 5 HOH A 85 1185 143 HOH HOH . O 5 HOH A 86 1186 4 HOH HOH . O 5 HOH A 87 1187 105 HOH HOH . O 5 HOH A 88 1188 55 HOH HOH . O 5 HOH A 89 1189 127 HOH HOH . O 5 HOH A 90 1190 83 HOH HOH . O 5 HOH A 91 1191 107 HOH HOH . O 5 HOH A 92 1192 125 HOH HOH . O 5 HOH A 93 1193 137 HOH HOH . O 5 HOH A 94 1194 36 HOH HOH . O 5 HOH A 95 1195 1 HOH HOH . O 5 HOH A 96 1196 138 HOH HOH . O 5 HOH A 97 1197 109 HOH HOH . O 5 HOH A 98 1198 133 HOH HOH . O 5 HOH A 99 1199 65 HOH HOH . O 5 HOH A 100 1200 75 HOH HOH . O 5 HOH A 101 1201 110 HOH HOH . O 5 HOH A 102 1202 64 HOH HOH . O 5 HOH A 103 1203 14 HOH HOH . O 5 HOH A 104 1204 59 HOH HOH . O 5 HOH A 105 1205 140 HOH HOH . O 5 HOH A 106 1206 57 HOH HOH . O 5 HOH A 107 1207 104 HOH HOH . O 5 HOH A 108 1208 11 HOH HOH . O 5 HOH A 109 1209 18 HOH HOH . O 5 HOH A 110 1210 117 HOH HOH . O 5 HOH A 111 1211 97 HOH HOH . O 5 HOH A 112 1212 141 HOH HOH . O 5 HOH A 113 1213 134 HOH HOH . O 5 HOH A 114 1214 40 HOH HOH . O 5 HOH A 115 1215 80 HOH HOH . O 5 HOH A 116 1216 87 HOH HOH . O 5 HOH A 117 1217 50 HOH HOH . O 5 HOH A 118 1218 72 HOH HOH . O 5 HOH A 119 1219 53 HOH HOH . O 5 HOH A 120 1220 116 HOH HOH . O 5 HOH A 121 1221 118 HOH HOH . O 5 HOH A 122 1222 25 HOH HOH . O 5 HOH A 123 1223 111 HOH HOH . O 5 HOH A 124 1224 94 HOH HOH . O 5 HOH A 125 1225 128 HOH HOH . O 5 HOH A 126 1226 93 HOH HOH . O 5 HOH A 127 1227 77 HOH HOH . O 5 HOH A 128 1228 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 3.341 22.166 14.725 1 30.02 ? N SAH 1001 A 1 HETATM 2 C CA SAH . . . C 3 2.833 20.812 14.918 1 29.94 ? CA SAH 1001 A 1 HETATM 3 C CB SAH . . . C 3 1.411 20.853 15.475 1 28.3 ? CB SAH 1001 A 1 HETATM 4 C CG SAH . . . C 3 1.33 20.887 17.001 1 24.3 ? CG SAH 1001 A 1 HETATM 5 S SD SAH . . . C 3 1.936 19.336 17.715 1 29.43 ? SD SAH 1001 A 1 HETATM 6 C C SAH . . . C 3 2.886 20.03 13.61 1 32.85 ? C SAH 1001 A 1 HETATM 7 O O SAH . . . C 3 3.378 20.534 12.594 1 30.78 ? O SAH 1001 A 1 HETATM 8 O OXT SAH . . . C 3 2.449 18.878 13.544 1 32.06 ? OXT SAH 1001 A 1 HETATM 9 C C5' SAH . . . C 3 3.06 20.178 18.868 1 32.39 ? C5' SAH 1001 A 1 HETATM 10 C C4' SAH . . . C 3 4.368 20.558 18.205 1 30.8 ? C4' SAH 1001 A 1 HETATM 11 O O4' SAH . . . C 3 4.209 21.805 17.559 1 32.86 ? O4' SAH 1001 A 1 HETATM 12 C C3' SAH . . . C 3 5.516 20.716 19.19 1 37.09 ? C3' SAH 1001 A 1 HETATM 13 O O3' SAH . . . C 3 6.309 19.556 19.223 1 32.76 ? O3' SAH 1001 A 1 HETATM 14 C C2' SAH . . . C 3 6.31 21.873 18.624 1 36.19 ? C2' SAH 1001 A 1 HETATM 15 O O2' SAH . . . C 3 7.291 21.374 17.754 1 33.51 ? O2' SAH 1001 A 1 HETATM 16 C C1' SAH . . . C 3 5.314 22.649 17.777 1 34.7 ? C1' SAH 1001 A 1 HETATM 17 N N9 SAH . . . C 3 4.829 23.833 18.504 1 31.28 ? N9 SAH 1001 A 1 HETATM 18 C C8 SAH . . . C 3 3.639 23.934 19.17 1 32.15 ? C8 SAH 1001 A 1 HETATM 19 N N7 SAH . . . C 3 3.546 25.165 19.724 1 28 ? N7 SAH 1001 A 1 HETATM 20 C C5 SAH . . . C 3 4.668 25.848 19.428 1 34.6 ? C5 SAH 1001 A 1 HETATM 21 C C6 SAH . . . C 3 5.085 27.133 19.748 1 34.51 ? C6 SAH 1001 A 1 HETATM 22 N N6 SAH . . . C 3 4.316 27.94 20.478 1 26.49 ? N6 SAH 1001 A 1 HETATM 23 N N1 SAH . . . C 3 6.312 27.561 19.297 1 34.02 ? N1 SAH 1001 A 1 HETATM 24 C C2 SAH . . . C 3 7.109 26.722 18.543 1 32.26 ? C2 SAH 1001 A 1 HETATM 25 N N3 SAH . . . C 3 6.692 25.45 18.228 1 34.46 ? N3 SAH 1001 A 1 HETATM 26 C C4 SAH . . . C 3 5.486 25.022 18.662 1 35.35 ? C4 SAH 1001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #