data_6MBL # _model_server_result.job_id AB6w3lu-0xa9j0KtDZgYfg _model_server_result.datetime_utc '2025-03-26 15:35:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1011}' # _entry.id 6MBL # _exptl.entry_id 6MBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MBL _cell.length_a 56.557 _cell.length_b 92.83 _cell.length_c 111.635 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6MBL _atom_sites.fract_transf_matrix[1][1] 0.017681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1001 1001 SAH SAH . D 4 EDO A 1 1002 501 EDO EDO . E 4 EDO A 1 1003 502 EDO EDO . F 4 EDO A 1 1004 503 EDO EDO . G 4 EDO A 1 1005 504 EDO EDO . H 4 EDO A 1 1006 505 EDO EDO . I 4 EDO A 1 1007 506 EDO EDO . J 4 EDO A 1 1008 507 EDO EDO . K 4 EDO A 1 1009 508 EDO EDO . L 4 EDO A 1 1010 509 EDO EDO . M 4 EDO A 1 1011 510 EDO EDO . N 5 HOH Y 1 101 42 HOH HOH . N 5 HOH Y 2 102 34 HOH HOH . N 5 HOH Y 3 103 66 HOH HOH . N 5 HOH Y 4 104 91 HOH HOH . N 5 HOH Y 5 105 37 HOH HOH . N 5 HOH Y 6 106 49 HOH HOH . N 5 HOH Y 7 107 7 HOH HOH . N 5 HOH Y 8 108 33 HOH HOH . N 5 HOH Y 9 109 135 HOH HOH . N 5 HOH Y 10 110 114 HOH HOH . N 5 HOH Y 11 111 144 HOH HOH . O 5 HOH A 1 1101 106 HOH HOH . O 5 HOH A 2 1102 123 HOH HOH . O 5 HOH A 3 1103 119 HOH HOH . O 5 HOH A 4 1104 44 HOH HOH . O 5 HOH A 5 1105 102 HOH HOH . O 5 HOH A 6 1106 100 HOH HOH . O 5 HOH A 7 1107 28 HOH HOH . O 5 HOH A 8 1108 39 HOH HOH . O 5 HOH A 9 1109 103 HOH HOH . O 5 HOH A 10 1110 84 HOH HOH . O 5 HOH A 11 1111 95 HOH HOH . O 5 HOH A 12 1112 69 HOH HOH . O 5 HOH A 13 1113 16 HOH HOH . O 5 HOH A 14 1114 27 HOH HOH . O 5 HOH A 15 1115 13 HOH HOH . O 5 HOH A 16 1116 68 HOH HOH . O 5 HOH A 17 1117 79 HOH HOH . O 5 HOH A 18 1118 74 HOH HOH . O 5 HOH A 19 1119 98 HOH HOH . O 5 HOH A 20 1120 82 HOH HOH . O 5 HOH A 21 1121 51 HOH HOH . O 5 HOH A 22 1122 88 HOH HOH . O 5 HOH A 23 1123 115 HOH HOH . O 5 HOH A 24 1124 35 HOH HOH . O 5 HOH A 25 1125 20 HOH HOH . O 5 HOH A 26 1126 29 HOH HOH . O 5 HOH A 27 1127 86 HOH HOH . O 5 HOH A 28 1128 136 HOH HOH . O 5 HOH A 29 1129 112 HOH HOH . O 5 HOH A 30 1130 85 HOH HOH . O 5 HOH A 31 1131 31 HOH HOH . O 5 HOH A 32 1132 92 HOH HOH . O 5 HOH A 33 1133 24 HOH HOH . O 5 HOH A 34 1134 52 HOH HOH . O 5 HOH A 35 1135 54 HOH HOH . O 5 HOH A 36 1136 62 HOH HOH . O 5 HOH A 37 1137 70 HOH HOH . O 5 HOH A 38 1138 124 HOH HOH . O 5 HOH A 39 1139 122 HOH HOH . O 5 HOH A 40 1140 131 HOH HOH . O 5 HOH A 41 1141 9 HOH HOH . O 5 HOH A 42 1142 47 HOH HOH . O 5 HOH A 43 1143 96 HOH HOH . O 5 HOH A 44 1144 60 HOH HOH . O 5 HOH A 45 1145 71 HOH HOH . O 5 HOH A 46 1146 23 HOH HOH . O 5 HOH A 47 1147 41 HOH HOH . O 5 HOH A 48 1148 46 HOH HOH . O 5 HOH A 49 1149 73 HOH HOH . O 5 HOH A 50 1150 132 HOH HOH . O 5 HOH A 51 1151 48 HOH HOH . O 5 HOH A 52 1152 58 HOH HOH . O 5 HOH A 53 1153 108 HOH HOH . O 5 HOH A 54 1154 130 HOH HOH . O 5 HOH A 55 1155 78 HOH HOH . O 5 HOH A 56 1156 30 HOH HOH . O 5 HOH A 57 1157 26 HOH HOH . O 5 HOH A 58 1158 90 HOH HOH . O 5 HOH A 59 1159 17 HOH HOH . O 5 HOH A 60 1160 113 HOH HOH . O 5 HOH A 61 1161 5 HOH HOH . O 5 HOH A 62 1162 32 HOH HOH . O 5 HOH A 63 1163 126 HOH HOH . O 5 HOH A 64 1164 2 HOH HOH . O 5 HOH A 65 1165 76 HOH HOH . O 5 HOH A 66 1166 43 HOH HOH . O 5 HOH A 67 1167 38 HOH HOH . O 5 HOH A 68 1168 15 HOH HOH . O 5 HOH A 69 1169 89 HOH HOH . O 5 HOH A 70 1170 8 HOH HOH . O 5 HOH A 71 1171 121 HOH HOH . O 5 HOH A 72 1172 142 HOH HOH . O 5 HOH A 73 1173 12 HOH HOH . O 5 HOH A 74 1174 129 HOH HOH . O 5 HOH A 75 1175 101 HOH HOH . O 5 HOH A 76 1176 61 HOH HOH . O 5 HOH A 77 1177 22 HOH HOH . O 5 HOH A 78 1178 56 HOH HOH . O 5 HOH A 79 1179 63 HOH HOH . O 5 HOH A 80 1180 45 HOH HOH . O 5 HOH A 81 1181 67 HOH HOH . O 5 HOH A 82 1182 99 HOH HOH . O 5 HOH A 83 1183 21 HOH HOH . O 5 HOH A 84 1184 81 HOH HOH . O 5 HOH A 85 1185 143 HOH HOH . O 5 HOH A 86 1186 4 HOH HOH . O 5 HOH A 87 1187 105 HOH HOH . O 5 HOH A 88 1188 55 HOH HOH . O 5 HOH A 89 1189 127 HOH HOH . O 5 HOH A 90 1190 83 HOH HOH . O 5 HOH A 91 1191 107 HOH HOH . O 5 HOH A 92 1192 125 HOH HOH . O 5 HOH A 93 1193 137 HOH HOH . O 5 HOH A 94 1194 36 HOH HOH . O 5 HOH A 95 1195 1 HOH HOH . O 5 HOH A 96 1196 138 HOH HOH . O 5 HOH A 97 1197 109 HOH HOH . O 5 HOH A 98 1198 133 HOH HOH . O 5 HOH A 99 1199 65 HOH HOH . O 5 HOH A 100 1200 75 HOH HOH . O 5 HOH A 101 1201 110 HOH HOH . O 5 HOH A 102 1202 64 HOH HOH . O 5 HOH A 103 1203 14 HOH HOH . O 5 HOH A 104 1204 59 HOH HOH . O 5 HOH A 105 1205 140 HOH HOH . O 5 HOH A 106 1206 57 HOH HOH . O 5 HOH A 107 1207 104 HOH HOH . O 5 HOH A 108 1208 11 HOH HOH . O 5 HOH A 109 1209 18 HOH HOH . O 5 HOH A 110 1210 117 HOH HOH . O 5 HOH A 111 1211 97 HOH HOH . O 5 HOH A 112 1212 141 HOH HOH . O 5 HOH A 113 1213 134 HOH HOH . O 5 HOH A 114 1214 40 HOH HOH . O 5 HOH A 115 1215 80 HOH HOH . O 5 HOH A 116 1216 87 HOH HOH . O 5 HOH A 117 1217 50 HOH HOH . O 5 HOH A 118 1218 72 HOH HOH . O 5 HOH A 119 1219 53 HOH HOH . O 5 HOH A 120 1220 116 HOH HOH . O 5 HOH A 121 1221 118 HOH HOH . O 5 HOH A 122 1222 25 HOH HOH . O 5 HOH A 123 1223 111 HOH HOH . O 5 HOH A 124 1224 94 HOH HOH . O 5 HOH A 125 1225 128 HOH HOH . O 5 HOH A 126 1226 93 HOH HOH . O 5 HOH A 127 1227 77 HOH HOH . O 5 HOH A 128 1228 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 4 12.984 32.962 31.126 1 58.97 ? C1 EDO 1011 A 1 HETATM 2 O O1 EDO . . . M 4 13.252 32.518 29.794 1 62.63 ? O1 EDO 1011 A 1 HETATM 3 C C2 EDO . . . M 4 11.78 32.201 31.66 1 59.05 ? C2 EDO 1011 A 1 HETATM 4 O O2 EDO . . . M 4 12.077 31.769 32.989 1 58.19 ? O2 EDO 1011 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #