data_6MCR # _model_server_result.job_id jFAykkJPg-f7_YaRFTdhGg _model_server_result.datetime_utc '2024-10-09 23:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 6MCR # _exptl.entry_id 6MCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MCR _cell.length_a 62.784 _cell.length_b 62.784 _cell.length_c 82.129 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.376333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6MCR _atom_sites.fract_transf_matrix[1][1] 0.015928 _atom_sites.fract_transf_matrix[1][2] 0.009196 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 101 1 EDO EDO . C 2 EDO A 1 102 2 EDO EDO . D 2 EDO A 1 103 3 EDO EDO . E 3 JDY A 1 104 1 JDY DRG . F 4 HOH A 1 201 2 HOH HOH . F 4 HOH A 2 202 5 HOH HOH . F 4 HOH A 3 203 15 HOH HOH . F 4 HOH A 4 204 28 HOH HOH . F 4 HOH A 5 205 19 HOH HOH . F 4 HOH A 6 206 2 HOH HOH . F 4 HOH A 7 207 3 HOH HOH . F 4 HOH A 8 208 1 HOH HOH . F 4 HOH A 9 209 7 HOH HOH . F 4 HOH A 10 210 17 HOH HOH . F 4 HOH A 11 211 12 HOH HOH . F 4 HOH A 12 212 36 HOH HOH . F 4 HOH A 13 213 14 HOH HOH . F 4 HOH A 14 214 4 HOH HOH . F 4 HOH A 15 215 8 HOH HOH . F 4 HOH A 16 216 3 HOH HOH . F 4 HOH A 17 217 7 HOH HOH . F 4 HOH A 18 218 9 HOH HOH . F 4 HOH A 19 219 11 HOH HOH . F 4 HOH A 20 220 11 HOH HOH . F 4 HOH A 21 221 26 HOH HOH . F 4 HOH A 22 222 14 HOH HOH . F 4 HOH A 23 223 13 HOH HOH . F 4 HOH A 24 224 29 HOH HOH . F 4 HOH A 25 225 6 HOH HOH . F 4 HOH A 26 226 10 HOH HOH . F 4 HOH A 27 227 4 HOH HOH . F 4 HOH A 28 228 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 9.166 -28.943 3.6 1 52.45 ? C1 EDO 103 A 1 HETATM 2 O O1 EDO . . . D 2 8.796 -27.552 3.708 1 52.26 ? O1 EDO 103 A 1 HETATM 3 C C2 EDO . . . D 2 8.047 -29.809 4.194 1 49.93 ? C2 EDO 103 A 1 HETATM 4 O O2 EDO . . . D 2 7.816 -31.018 3.43 1 29.31 ? O2 EDO 103 A 1 HETATM 5 H H11 EDO . . . D 2 9.32 -29.204 2.551 1 62.94 ? H11 EDO 103 A 1 HETATM 6 H H12 EDO . . . D 2 10.099 -29.122 4.138 1 62.94 ? H12 EDO 103 A 1 HETATM 7 H HO1 EDO . . . D 2 9.498 -27.002 3.335 1 62.71 ? HO1 EDO 103 A 1 HETATM 8 H H21 EDO . . . D 2 8.309 -30.078 5.22 1 59.91 ? H21 EDO 103 A 1 HETATM 9 H H22 EDO . . . D 2 7.124 -29.227 4.231 1 59.91 ? H22 EDO 103 A 1 HETATM 10 H HO2 EDO . . . D 2 7.105 -31.528 3.842 1 35.17 ? HO2 EDO 103 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #