data_6MCT # _model_server_result.job_id MJcZKboF-khe1GE3-YDXkg _model_server_result.datetime_utc '2024-11-21 13:46:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mct # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":102}' # _entry.id 6MCT # _exptl.entry_id 6MCT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MCT _cell.length_a 52.894 _cell.length_b 165.63 _cell.length_c 41.067 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MCT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 PISA pentameric 5 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,P,Q,R,S,T,U,V,W,X,Y,NA,OA,PA,QA,RA 1 1 F,G,H,I,J,Z,AA,BA,CA,DA,EA,FA,SA,TA,UA,VA,WA 2 1 K,L,M,N,O,GA,HA,IA,JA,KA,LA,MA,XA,YA,ZA,AB,BB 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 P N N ? 2 Q N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 Y N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 HA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 26 A GLY 26 1_555 A N NH2 27 A NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 B C GLY 26 B GLY 26 1_555 B N NH2 27 B NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 C C GLY 26 C GLY 26 1_555 C N NH2 27 C NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 D C GLY 26 D GLY 26 1_555 D N NH2 27 D NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 E C GLY 26 E GLY 26 1_555 E N NH2 27 E NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 F C GLY 26 F GLY 26 1_555 F N NH2 27 F NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 G C GLY 26 G GLY 26 1_555 G N NH2 27 G NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 H C GLY 26 H GLY 26 1_555 H N NH2 27 H NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 I C GLY 26 I GLY 26 1_555 I N NH2 27 I NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 J C GLY 26 J GLY 26 1_555 J N NH2 27 J NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 K C GLY 26 K GLY 26 1_555 K N NH2 27 K NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale12 L C GLY 26 L GLY 26 1_555 L N NH2 27 L NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 M C GLY 26 M GLY 26 1_555 M N NH2 27 M NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 N C GLY 26 N GLY 26 1_555 N N NH2 27 N NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 O C GLY 26 O GLY 26 1_555 O N NH2 27 O NH2 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 54 n n C1 H11 C8E sing 55 n n C1 H12 C8E sing 56 n n C1 H13 C8E sing 57 n n C2 C3 C8E sing 58 n n C2 H21 C8E sing 59 n n C2 H22 C8E sing 60 n n C3 C4 C8E sing 61 n n C3 H31 C8E sing 62 n n C3 H32 C8E sing 63 n n C4 C5 C8E sing 64 n n C4 H41 C8E sing 65 n n C4 H42 C8E sing 66 n n C5 C6 C8E sing 67 n n C5 H51 C8E sing 68 n n C5 H52 C8E sing 69 n n C6 C7 C8E sing 70 n n C6 H61 C8E sing 71 n n C6 H62 C8E sing 72 n n C7 C8 C8E sing 73 n n C7 H71 C8E sing 74 n n C7 H72 C8E sing 75 n n C8 O9 C8E sing 76 n n C8 H81 C8E sing 77 n n C8 H82 C8E sing 78 n n O9 C10 C8E sing 79 n n C10 C11 C8E sing 80 n n C10 H101 C8E sing 81 n n C10 H102 C8E sing 82 n n C11 O12 C8E sing 83 n n C11 H111 C8E sing 84 n n C11 H112 C8E sing 85 n n O12 C13 C8E sing 86 n n C13 C14 C8E sing 87 n n C13 H131 C8E sing 88 n n C13 H132 C8E sing 89 n n C14 O15 C8E sing 90 n n C14 H141 C8E sing 91 n n C14 H142 C8E sing 92 n n O15 C16 C8E sing 93 n n C16 C17 C8E sing 94 n n C16 H161 C8E sing 95 n n C16 H162 C8E sing 96 n n C17 O18 C8E sing 97 n n C17 H171 C8E sing 98 n n C17 H172 C8E sing 99 n n O18 C19 C8E sing 100 n n C19 C20 C8E sing 101 n n C19 H191 C8E sing 102 n n C19 H192 C8E sing 103 n n C20 O21 C8E sing 104 n n C20 H201 C8E sing 105 n n C20 H202 C8E sing 106 n n O21 HO2 C8E sing 107 n n # _atom_sites.entry_id 6MCT _atom_sites.fract_transf_matrix[1][1] 0.018906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 2 C8E A 1 101 101 C8E C8E . Q 2 C8E A 1 102 109 C8E C8E . R 3 SO4 B 1 101 2 SO4 SO4 . S 3 SO4 B 1 102 5 SO4 SO4 . T 3 SO4 B 1 103 8 SO4 SO4 . U 2 C8E B 1 104 107 C8E C8E . V 2 C8E B 1 105 108 C8E C8E . W 2 C8E B 1 106 116 C8E C8E . X 3 SO4 C 1 101 3 SO4 SO4 . Y 2 C8E D 1 101 102 C8E C8E . Z 3 SO4 G 1 101 7 SO4 SO4 . AA 2 C8E G 1 102 103 C8E C8E . BA 2 C8E G 1 103 104 C8E C8E . CA 2 C8E H 1 101 110 C8E C8E . DA 2 C8E H 1 102 111 C8E C8E . EA 2 C8E H 1 103 115 C8E C8E . FA 3 SO4 J 1 101 4 SO4 SO4 . GA 3 SO4 K 1 101 6 SO4 SO4 . HA 2 C8E K 1 102 105 C8E C8E . IA 3 SO4 L 1 101 1 SO4 SO4 . JA 2 C8E M 1 101 106 C8E C8E . KA 2 C8E M 1 102 112 C8E C8E . LA 2 C8E M 1 103 113 C8E C8E . MA 2 C8E O 1 101 114 C8E C8E . NA 4 HOH A 1 201 7 HOH HOH . NA 4 HOH A 2 202 36 HOH HOH . NA 4 HOH A 3 203 43 HOH HOH . NA 4 HOH A 4 204 44 HOH HOH . OA 4 HOH B 1 201 49 HOH HOH . PA 4 HOH C 1 201 4 HOH HOH . PA 4 HOH C 2 202 16 HOH HOH . PA 4 HOH C 3 203 55 HOH HOH . QA 4 HOH D 1 201 5 HOH HOH . QA 4 HOH D 2 202 17 HOH HOH . RA 4 HOH E 1 101 2 HOH HOH . RA 4 HOH E 2 102 8 HOH HOH . RA 4 HOH E 3 103 9 HOH HOH . RA 4 HOH E 4 104 12 HOH HOH . RA 4 HOH E 5 105 38 HOH HOH . SA 4 HOH F 1 101 46 HOH HOH . SA 4 HOH F 2 102 41 HOH HOH . TA 4 HOH G 1 201 28 HOH HOH . TA 4 HOH G 2 202 14 HOH HOH . TA 4 HOH G 3 203 34 HOH HOH . TA 4 HOH G 4 204 10 HOH HOH . TA 4 HOH G 5 205 33 HOH HOH . TA 4 HOH G 6 206 20 HOH HOH . UA 4 HOH H 1 201 42 HOH HOH . UA 4 HOH H 2 202 18 HOH HOH . UA 4 HOH H 3 203 19 HOH HOH . UA 4 HOH H 4 204 37 HOH HOH . VA 4 HOH I 1 101 6 HOH HOH . VA 4 HOH I 2 102 48 HOH HOH . VA 4 HOH I 3 103 45 HOH HOH . WA 4 HOH J 1 201 50 HOH HOH . WA 4 HOH J 2 202 21 HOH HOH . WA 4 HOH J 3 203 15 HOH HOH . XA 4 HOH K 1 201 13 HOH HOH . XA 4 HOH K 2 202 3 HOH HOH . XA 4 HOH K 3 203 27 HOH HOH . XA 4 HOH K 4 204 26 HOH HOH . XA 4 HOH K 5 205 30 HOH HOH . XA 4 HOH K 6 206 54 HOH HOH . YA 4 HOH L 1 201 11 HOH HOH . YA 4 HOH L 2 202 25 HOH HOH . YA 4 HOH L 3 203 52 HOH HOH . YA 4 HOH L 4 204 51 HOH HOH . YA 4 HOH L 5 205 40 HOH HOH . ZA 4 HOH M 1 201 53 HOH HOH . ZA 4 HOH M 2 202 23 HOH HOH . ZA 4 HOH M 3 203 22 HOH HOH . ZA 4 HOH M 4 204 39 HOH HOH . ZA 4 HOH M 5 205 29 HOH HOH . AB 4 HOH N 1 101 35 HOH HOH . AB 4 HOH N 2 102 47 HOH HOH . BB 4 HOH O 1 201 32 HOH HOH . BB 4 HOH O 2 202 1 HOH HOH . BB 4 HOH O 3 203 31 HOH HOH . BB 4 HOH O 4 204 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . A . DA 2 -10.064 51.507 11.04 0.57 45.75 ? C1 C8E 102 H 1 HETATM 2 C C1 C8E . B . DA 2 -9.981 52.188 10.417 0.43 45.81 ? C1 C8E 102 H 1 HETATM 3 C C2 C8E . A . DA 2 -11.493 51.083 11.362 0.57 46.32 ? C2 C8E 102 H 1 HETATM 4 C C2 C8E . B . DA 2 -10.524 50.764 10.417 0.43 45.83 ? C2 C8E 102 H 1 HETATM 5 C C3 C8E . A . DA 2 -12.397 51.094 10.132 0.57 46.2 ? C3 C8E 102 H 1 HETATM 6 C C3 C8E . B . DA 2 -12.021 50.726 10.139 0.43 46.38 ? C3 C8E 102 H 1 HETATM 7 C C4 C8E . A . DA 2 -13.166 49.778 10.022 0.57 47.41 ? C4 C8E 102 H 1 HETATM 8 C C4 C8E . B . DA 2 -12.399 49.381 9.53 0.43 46.74 ? C4 C8E 102 H 1 HETATM 9 C C5 C8E . A . DA 2 -14.62 49.969 9.599 0.57 48.94 ? C5 C8E 102 H 1 HETATM 10 C C5 C8E . B . DA 2 -13.622 49.491 8.633 0.43 47.9 ? C5 C8E 102 H 1 HETATM 11 C C6 C8E . A . DA 2 -15.12 48.765 8.797 0.57 49.03 ? C6 C8E 102 H 1 HETATM 12 C C6 C8E . B . DA 2 -14.724 48.565 9.126 0.43 48.97 ? C6 C8E 102 H 1 HETATM 13 C C7 C8E . A . DA 2 -16.521 48.971 8.224 0.57 50.86 ? C7 C8E 102 H 1 HETATM 14 C C7 C8E . B . DA 2 -16.056 49.298 9.167 0.43 50.79 ? C7 C8E 102 H 1 HETATM 15 C C8 C8E . A . DA 2 -17.645 48.243 8.969 0.57 52.17 ? C8 C8E 102 H 1 HETATM 16 C C8 C8E . B . DA 2 -17.11 48.501 9.921 0.43 52.27 ? C8 C8E 102 H 1 HETATM 17 O O9 C8E . A . DA 2 -17.948 48.867 10.199 0.57 53.28 ? O9 C8E 102 H 1 HETATM 18 O O9 C8E . B . DA 2 -17.648 49.314 10.948 0.43 53.48 ? O9 C8E 102 H 1 HETATM 19 C C10 C8E . A . DA 2 -19.041 49.769 10.209 0.57 53.03 ? C10 C8E 102 H 1 HETATM 20 C C10 C8E . B . DA 2 -18.71 50.135 10.513 0.43 53.21 ? C10 C8E 102 H 1 HETATM 21 C C11 C8E . A . DA 2 -18.926 50.58 11.506 0.57 53.09 ? C11 C8E 102 H 1 HETATM 22 C C11 C8E . B . DA 2 -19.623 50.443 11.697 0.43 53.12 ? C11 C8E 102 H 1 HETATM 23 O O12 C8E . A . DA 2 -20.164 51.103 11.956 0.57 52.84 ? O12 C8E 102 H 1 HETATM 24 O O12 C8E . B . DA 2 -19.026 51.322 12.634 0.43 52.24 ? O12 C8E 102 H 1 HETATM 25 C C13 C8E . A . DA 2 -20.841 50.181 12.798 0.57 53.23 ? C13 C8E 102 H 1 HETATM 26 C C13 C8E . B . DA 2 -19.564 52.615 12.487 0.43 50.74 ? C13 C8E 102 H 1 HETATM 27 C C14 C8E . A . DA 2 -22.134 50.767 13.35 0.57 52.9 ? C14 C8E 102 H 1 HETATM 28 C C14 C8E . B . DA 2 -19.219 53.486 13.687 0.43 49.11 ? C14 C8E 102 H 1 HETATM 29 O O15 C8E . A . DA 2 -22.307 50.331 14.683 0.57 54.75 ? O15 C8E 102 H 1 HETATM 30 O O15 C8E . B . DA 2 -19.028 52.674 14.818 0.43 49.42 ? O15 C8E 102 H 1 HETATM 31 C C16 C8E . A . DA 2 -23.408 50.945 15.323 0.57 54.32 ? C16 C8E 102 H 1 HETATM 32 C C16 C8E . B . DA 2 -20.216 52.535 15.569 0.43 50.71 ? C16 C8E 102 H 1 HETATM 33 C C17 C8E . A . DA 2 -23.455 52.432 14.963 0.57 55.56 ? C17 C8E 102 H 1 HETATM 34 C C17 C8E . B . DA 2 -20.494 53.752 16.428 0.43 51.93 ? C17 C8E 102 H 1 HETATM 35 O O18 C8E . A . DA 2 -24.106 53.195 15.96 0.57 55.12 ? O18 C8E 102 H 1 HETATM 36 O O18 C8E . B . DA 2 -21.88 53.745 16.7 0.43 53.35 ? O18 C8E 102 H 1 HETATM 37 C C19 C8E . A . DA 2 -23.196 53.764 16.881 0.57 52.65 ? C19 C8E 102 H 1 HETATM 38 C C19 C8E . B . DA 2 -22.175 54.008 18.058 0.43 51.65 ? C19 C8E 102 H 1 HETATM 39 C C20 C8E . A . DA 2 -23.594 55.202 17.227 0.57 50.5 ? C20 C8E 102 H 1 HETATM 40 C C20 C8E . B . DA 2 -23.098 55.222 18.14 0.43 50.54 ? C20 C8E 102 H 1 HETATM 41 O O21 C8E . A . DA 2 -23.08 55.583 18.487 0.57 49.76 ? O21 C8E 102 H 1 HETATM 42 O O21 C8E . B . DA 2 -22.509 56.231 18.924 0.43 49.45 ? O21 C8E 102 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #