data_6MCU
#
_model_server_result.job_id            ybCow96cW52mmLgSwn2xcg 
_model_server_result.datetime_utc      '2024-11-15 14:48:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mcu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":202}' 
#
_entry.id    6MCU 
#
_exptl.entry_id    6MCU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MCU 
_cell.length_a            65.874 
_cell.length_b            73.992 
_cell.length_c            349.989 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MCU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,U,X 1 1 
B,C,V,W 2 1 
E,H,P,Q,Y,BA 3 1 
F,G,M,N,O,Z,AA 4 1 
I,L,T,CA,FA 5 1 
J,K,R,S,DA,EA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 O N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 F NZ LYS 108 F LYS 108 1_555 N C15 RET . F RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? 
covale ? covale2 G NZ LYS 108 G LYS 108 1_555 O C15 RET . G RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 ? 
covale ? covale3 H NZ LYS 108 H LYS 108 1_555 Q C15 RET . H RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? 
covale ? covale4 J NZ LYS 108 J LYS 108 1_555 R C15 RET . J RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
covale ? covale5 K NZ LYS 108 K LYS 108 1_555 S C15 RET . K RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 273 n n 
C1 C6 RET sing 274 n n 
C1 C16 RET sing 275 n n 
C1 C17 RET sing 276 n n 
C2 C3 RET sing 277 n n 
C2 H21 RET sing 278 n n 
C2 H22 RET sing 279 n n 
C3 C4 RET sing 280 n n 
C3 H31 RET sing 281 n n 
C3 H32 RET sing 282 n n 
C4 C5 RET sing 283 n n 
C4 H41 RET sing 284 n n 
C4 H42 RET sing 285 n n 
C5 C6 RET doub 286 n n 
C5 C18 RET sing 287 n n 
C6 C7 RET sing 288 n n 
C7 C8 RET doub 289 e n 
C7 H7 RET sing 290 n n 
C8 C9 RET sing 291 n n 
C8 H8 RET sing 292 n n 
C9 C10 RET doub 293 e n 
C9 C19 RET sing 294 n n 
C10 C11 RET sing 295 n n 
C10 H10 RET sing 296 n n 
C11 C12 RET doub 297 e n 
C11 H11 RET sing 298 n n 
C12 C13 RET sing 299 n n 
C12 H12 RET sing 300 n n 
C13 C14 RET doub 301 e n 
C13 C20 RET sing 302 n n 
C14 C15 RET sing 303 n n 
C14 H14 RET sing 304 n n 
C15 O1 RET doub 305 n n 
C15 H15 RET sing 306 n n 
C16 H161 RET sing 307 n n 
C16 H162 RET sing 308 n n 
C16 H163 RET sing 309 n n 
C17 H171 RET sing 310 n n 
C17 H172 RET sing 311 n n 
C17 H173 RET sing 312 n n 
C18 H181 RET sing 313 n n 
C18 H182 RET sing 314 n n 
C18 H183 RET sing 315 n n 
C19 H191 RET sing 316 n n 
C19 H192 RET sing 317 n n 
C19 H193 RET sing 318 n n 
C20 H201 RET sing 319 n n 
C20 H202 RET sing 320 n n 
C20 H203 RET sing 321 n n 
#
_atom_sites.entry_id                     6MCU 
_atom_sites.fract_transf_matrix[1][1]    0.01518 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 GOL F 1 201 4 GOL GOL . 
N 3 RET F 1 202 7 RET RET . 
O 3 RET G 1 201 12 RET RET . 
P 2 GOL H 1 201 3 GOL GOL . 
Q 3 RET H 1 202 8 RET RET . 
R 3 RET J 1 201 10 RET RET . 
S 3 RET K 1 201 6 RET RET . 
T 2 GOL L 1 201 1 GOL GOL . 
U 4 HOH A 1 201 12 HOH HOH . 
U 4 HOH A 2 202 2 HOH HOH . 
U 4 HOH A 3 203 11 HOH HOH . 
U 4 HOH A 4 204 106 HOH HOH . 
U 4 HOH A 5 205 1 HOH HOH . 
U 4 HOH A 6 206 30 HOH HOH . 
U 4 HOH A 7 207 8 HOH HOH . 
U 4 HOH A 8 208 10 HOH HOH . 
U 4 HOH A 9 209 136 HOH HOH . 
U 4 HOH A 10 210 13 HOH HOH . 
U 4 HOH A 11 211 102 HOH HOH . 
U 4 HOH A 12 212 15 HOH HOH . 
U 4 HOH A 13 213 112 HOH HOH . 
U 4 HOH A 14 214 104 HOH HOH . 
V 4 HOH B 1 201 22 HOH HOH . 
V 4 HOH B 2 202 128 HOH HOH . 
V 4 HOH B 3 203 18 HOH HOH . 
V 4 HOH B 4 204 119 HOH HOH . 
V 4 HOH B 5 205 124 HOH HOH . 
V 4 HOH B 6 206 146 HOH HOH . 
V 4 HOH B 7 207 51 HOH HOH . 
V 4 HOH B 8 208 17 HOH HOH . 
V 4 HOH B 9 209 19 HOH HOH . 
W 4 HOH C 1 201 127 HOH HOH . 
W 4 HOH C 2 202 132 HOH HOH . 
W 4 HOH C 3 203 21 HOH HOH . 
W 4 HOH C 4 204 121 HOH HOH . 
W 4 HOH C 5 205 126 HOH HOH . 
W 4 HOH C 6 206 148 HOH HOH . 
W 4 HOH C 7 207 117 HOH HOH . 
W 4 HOH C 8 208 120 HOH HOH . 
W 4 HOH C 9 209 135 HOH HOH . 
W 4 HOH C 10 210 137 HOH HOH . 
W 4 HOH C 11 211 24 HOH HOH . 
W 4 HOH C 12 212 23 HOH HOH . 
W 4 HOH C 13 213 27 HOH HOH . 
W 4 HOH C 14 214 130 HOH HOH . 
W 4 HOH C 15 215 133 HOH HOH . 
W 4 HOH C 16 216 134 HOH HOH . 
W 4 HOH C 17 217 129 HOH HOH . 
X 4 HOH D 1 201 144 HOH HOH . 
X 4 HOH D 2 202 143 HOH HOH . 
X 4 HOH D 3 203 142 HOH HOH . 
X 4 HOH D 4 204 4 HOH HOH . 
X 4 HOH D 5 205 5 HOH HOH . 
X 4 HOH D 6 206 139 HOH HOH . 
X 4 HOH D 7 207 115 HOH HOH . 
X 4 HOH D 8 208 109 HOH HOH . 
X 4 HOH D 9 209 145 HOH HOH . 
X 4 HOH D 10 210 29 HOH HOH . 
X 4 HOH D 11 211 141 HOH HOH . 
X 4 HOH D 12 212 138 HOH HOH . 
Y 4 HOH E 1 201 35 HOH HOH . 
Y 4 HOH E 2 202 163 HOH HOH . 
Y 4 HOH E 3 203 160 HOH HOH . 
Y 4 HOH E 4 204 156 HOH HOH . 
Y 4 HOH E 5 205 151 HOH HOH . 
Y 4 HOH E 6 206 42 HOH HOH . 
Y 4 HOH E 7 207 34 HOH HOH . 
Y 4 HOH E 8 208 32 HOH HOH . 
Y 4 HOH E 9 209 149 HOH HOH . 
Y 4 HOH E 10 210 177 HOH HOH . 
Y 4 HOH E 11 211 161 HOH HOH . 
Z 4 HOH F 1 301 56 HOH HOH . 
Z 4 HOH F 2 302 41 HOH HOH . 
Z 4 HOH F 3 303 33 HOH HOH . 
Z 4 HOH F 4 304 43 HOH HOH . 
Z 4 HOH F 5 305 166 HOH HOH . 
Z 4 HOH F 6 306 175 HOH HOH . 
Z 4 HOH F 7 307 153 HOH HOH . 
Z 4 HOH F 8 308 86 HOH HOH . 
Z 4 HOH F 9 309 164 HOH HOH . 
Z 4 HOH F 10 310 169 HOH HOH . 
Z 4 HOH F 11 311 176 HOH HOH . 
Z 4 HOH F 12 312 165 HOH HOH . 
Z 4 HOH F 13 313 168 HOH HOH . 
Z 4 HOH F 14 314 174 HOH HOH . 
AA 4 HOH G 1 301 182 HOH HOH . 
AA 4 HOH G 2 302 37 HOH HOH . 
AA 4 HOH G 3 303 183 HOH HOH . 
AA 4 HOH G 4 304 48 HOH HOH . 
AA 4 HOH G 5 305 45 HOH HOH . 
AA 4 HOH G 6 306 170 HOH HOH . 
AA 4 HOH G 7 307 180 HOH HOH . 
AA 4 HOH G 8 308 46 HOH HOH . 
AA 4 HOH G 9 309 9 HOH HOH . 
AA 4 HOH G 10 310 190 HOH HOH . 
AA 4 HOH G 11 311 214 HOH HOH . 
AA 4 HOH G 12 312 39 HOH HOH . 
AA 4 HOH G 13 313 44 HOH HOH . 
AA 4 HOH G 14 314 53 HOH HOH . 
BA 4 HOH H 1 301 189 HOH HOH . 
BA 4 HOH H 2 302 55 HOH HOH . 
BA 4 HOH H 3 303 125 HOH HOH . 
BA 4 HOH H 4 304 187 HOH HOH . 
BA 4 HOH H 5 305 188 HOH HOH . 
BA 4 HOH H 6 306 191 HOH HOH . 
BA 4 HOH H 7 307 20 HOH HOH . 
BA 4 HOH H 8 308 157 HOH HOH . 
BA 4 HOH H 9 309 50 HOH HOH . 
BA 4 HOH H 10 310 171 HOH HOH . 
BA 4 HOH H 11 311 181 HOH HOH . 
BA 4 HOH H 12 312 186 HOH HOH . 
BA 4 HOH H 13 313 38 HOH HOH . 
BA 4 HOH H 14 314 184 HOH HOH . 
BA 4 HOH H 15 315 167 HOH HOH . 
BA 4 HOH H 16 316 158 HOH HOH . 
CA 4 HOH I 1 201 197 HOH HOH . 
CA 4 HOH I 2 202 63 HOH HOH . 
CA 4 HOH I 3 203 57 HOH HOH . 
CA 4 HOH I 4 204 194 HOH HOH . 
CA 4 HOH I 5 205 61 HOH HOH . 
CA 4 HOH I 6 206 196 HOH HOH . 
CA 4 HOH I 7 207 59 HOH HOH . 
CA 4 HOH I 8 208 58 HOH HOH . 
DA 4 HOH J 1 301 69 HOH HOH . 
DA 4 HOH J 2 302 68 HOH HOH . 
DA 4 HOH J 3 303 75 HOH HOH . 
DA 4 HOH J 4 304 199 HOH HOH . 
DA 4 HOH J 5 305 67 HOH HOH . 
DA 4 HOH J 6 306 72 HOH HOH . 
DA 4 HOH J 7 307 62 HOH HOH . 
DA 4 HOH J 8 308 78 HOH HOH . 
DA 4 HOH J 9 309 198 HOH HOH . 
DA 4 HOH J 10 310 65 HOH HOH . 
DA 4 HOH J 11 311 66 HOH HOH . 
EA 4 HOH K 1 301 89 HOH HOH . 
EA 4 HOH K 2 302 79 HOH HOH . 
EA 4 HOH K 3 303 88 HOH HOH . 
EA 4 HOH K 4 304 85 HOH HOH . 
EA 4 HOH K 5 305 207 HOH HOH . 
EA 4 HOH K 6 306 87 HOH HOH . 
EA 4 HOH K 7 307 205 HOH HOH . 
EA 4 HOH K 8 308 83 HOH HOH . 
EA 4 HOH K 9 309 81 HOH HOH . 
EA 4 HOH K 10 310 84 HOH HOH . 
EA 4 HOH K 11 311 90 HOH HOH . 
EA 4 HOH K 12 312 204 HOH HOH . 
EA 4 HOH K 13 313 206 HOH HOH . 
FA 4 HOH L 1 301 97 HOH HOH . 
FA 4 HOH L 2 302 98 HOH HOH . 
FA 4 HOH L 3 303 99 HOH HOH . 
FA 4 HOH L 4 304 96 HOH HOH . 
FA 4 HOH L 5 305 74 HOH HOH . 
FA 4 HOH L 6 306 100 HOH HOH . 
FA 4 HOH L 7 307 192 HOH HOH . 
FA 4 HOH L 8 308 212 HOH HOH . 
FA 4 HOH L 9 309 213 HOH HOH . 
FA 4 HOH L 10 310 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . Q 3 30.811 0.389 164.12 1 37.02 ? C1 RET 202 H 1 
HETATM 2 C C2 RET . . . Q 3 29.966 0.593 165.386 1 34.15 ? C2 RET 202 H 1 
HETATM 3 C C3 RET . . . Q 3 28.945 -0.511 165.612 1 35.15 ? C3 RET 202 H 1 
HETATM 4 C C4 RET . . . Q 3 28.006 -0.606 164.427 1 30.04 ? C4 RET 202 H 1 
HETATM 5 C C5 RET . . . Q 3 28.704 -0.561 163.094 1 30.45 ? C5 RET 202 H 1 
HETATM 6 C C6 RET . . . Q 3 29.937 -0.046 162.939 1 29.53 ? C6 RET 202 H 1 
HETATM 7 C C7 RET . . . Q 3 30.485 0.217 161.624 1 25.13 ? C7 RET 202 H 1 
HETATM 8 C C8 RET . . . Q 3 31.464 -0.44 160.982 1 25.57 ? C8 RET 202 H 1 
HETATM 9 C C9 RET . . . Q 3 31.954 -0.14 159.647 1 30.99 ? C9 RET 202 H 1 
HETATM 10 C C10 RET . . . Q 3 33.288 -0.106 159.408 1 36.41 ? C10 RET 202 H 1 
HETATM 11 C C11 RET . . . Q 3 33.939 0.171 158.157 1 30.47 ? C11 RET 202 H 1 
HETATM 12 C C12 RET . . . Q 3 35.264 0.231 157.974 1 39.09 ? C12 RET 202 H 1 
HETATM 13 C C13 RET . . . Q 3 35.947 0.512 156.723 1 35.01 ? C13 RET 202 H 1 
HETATM 14 C C14 RET . . . Q 3 37.267 0.819 156.736 1 34.01 ? C14 RET 202 H 1 
HETATM 15 C C15 RET . . . Q 3 38.11 1.129 155.609 1 44.8 ? C15 RET 202 H 1 
HETATM 16 C C16 RET . . . Q 3 31.515 1.711 163.794 1 39.75 ? C16 RET 202 H 1 
HETATM 17 C C17 RET . . . Q 3 31.877 -0.674 164.411 1 32.4 ? C17 RET 202 H 1 
HETATM 18 C C18 RET . . . Q 3 27.802 -0.939 161.951 1 33.4 ? C18 RET 202 H 1 
HETATM 19 C C19 RET . . . Q 3 30.935 0.117 158.573 1 38.75 ? C19 RET 202 H 1 
HETATM 20 C C20 RET . . . Q 3 35.138 0.456 155.458 1 29.85 ? C20 RET 202 H 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#