data_6MCV
#
_model_server_result.job_id            8tveU1bCogElZGhDFdNK6A 
_model_server_result.datetime_utc      '2024-11-15 13:22:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mcv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    6MCV 
#
_exptl.entry_id    6MCV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MCV 
_cell.length_a            65.819 
_cell.length_b            74.362 
_cell.length_c            352.547 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MCV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,K,O,X 1 1 
B,L,M,P,Y 2 1 
C,G,Q,T 3 1 
D,H,N,R,U 4 1 
E,I,V 5 1 
F,J,S,W 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 260 n n 
C1 C6 RET sing 261 n n 
C1 C16 RET sing 262 n n 
C1 C17 RET sing 263 n n 
C2 C3 RET sing 264 n n 
C2 H21 RET sing 265 n n 
C2 H22 RET sing 266 n n 
C3 C4 RET sing 267 n n 
C3 H31 RET sing 268 n n 
C3 H32 RET sing 269 n n 
C4 C5 RET sing 270 n n 
C4 H41 RET sing 271 n n 
C4 H42 RET sing 272 n n 
C5 C6 RET doub 273 n n 
C5 C18 RET sing 274 n n 
C6 C7 RET sing 275 n n 
C7 C8 RET doub 276 e n 
C7 H7 RET sing 277 n n 
C8 C9 RET sing 278 n n 
C8 H8 RET sing 279 n n 
C9 C10 RET doub 280 e n 
C9 C19 RET sing 281 n n 
C10 C11 RET sing 282 n n 
C10 H10 RET sing 283 n n 
C11 C12 RET doub 284 e n 
C11 H11 RET sing 285 n n 
C12 C13 RET sing 286 n n 
C12 H12 RET sing 287 n n 
C13 C14 RET doub 288 e n 
C13 C20 RET sing 289 n n 
C14 C15 RET sing 290 n n 
C14 H14 RET sing 291 n n 
C15 O1 RET doub 292 n n 
C15 H15 RET sing 293 n n 
C16 H161 RET sing 294 n n 
C16 H162 RET sing 295 n n 
C16 H163 RET sing 296 n n 
C17 H171 RET sing 297 n n 
C17 H172 RET sing 298 n n 
C17 H173 RET sing 299 n n 
C18 H181 RET sing 300 n n 
C18 H182 RET sing 301 n n 
C18 H183 RET sing 302 n n 
C19 H191 RET sing 303 n n 
C19 H192 RET sing 304 n n 
C19 H193 RET sing 305 n n 
C20 H201 RET sing 306 n n 
C20 H202 RET sing 307 n n 
C20 H203 RET sing 308 n n 
#
_atom_sites.entry_id                     6MCV 
_atom_sites.fract_transf_matrix[1][1]    0.015193 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 RET B 1 201 3 RET RET . 
N 2 RET H 1 201 2 RET RET . 
O 3 HOH A 1 201 8 HOH HOH . 
O 3 HOH A 2 202 11 HOH HOH . 
P 3 HOH B 1 301 97 HOH HOH . 
P 3 HOH B 2 302 55 HOH HOH . 
Q 3 HOH C 1 201 51 HOH HOH . 
Q 3 HOH C 2 202 33 HOH HOH . 
Q 3 HOH C 3 203 4 HOH HOH . 
Q 3 HOH C 4 204 28 HOH HOH . 
Q 3 HOH C 5 205 27 HOH HOH . 
Q 3 HOH C 6 206 35 HOH HOH . 
Q 3 HOH C 7 207 32 HOH HOH . 
Q 3 HOH C 8 208 34 HOH HOH . 
R 3 HOH D 1 201 79 HOH HOH . 
S 3 HOH F 1 201 38 HOH HOH . 
T 3 HOH G 1 201 29 HOH HOH . 
T 3 HOH G 2 202 2 HOH HOH . 
T 3 HOH G 3 203 6 HOH HOH . 
T 3 HOH G 4 204 100 HOH HOH . 
U 3 HOH H 1 301 1 HOH HOH . 
U 3 HOH H 2 302 42 HOH HOH . 
U 3 HOH H 3 303 3 HOH HOH . 
U 3 HOH H 4 304 82 HOH HOH . 
U 3 HOH H 5 305 74 HOH HOH . 
U 3 HOH H 6 306 78 HOH HOH . 
U 3 HOH H 7 307 73 HOH HOH . 
V 3 HOH I 1 201 92 HOH HOH . 
W 3 HOH J 1 201 90 HOH HOH . 
W 3 HOH J 2 202 61 HOH HOH . 
X 3 HOH K 1 201 81 HOH HOH . 
X 3 HOH K 2 202 93 HOH HOH . 
Y 3 HOH L 1 201 26 HOH HOH . 
Y 3 HOH L 2 202 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 RET . . . M 2 -7.553 65.315 -45.123 1 67.73 ? C11 RET 201 B 1 
HETATM 2 C C12 RET . . . M 2 -6.721 65.69 -46.101 1 86.89 ? C12 RET 201 B 1 
HETATM 3 C C13 RET . . . M 2 -5.28 65.527 -46.128 1 81.21 ? C13 RET 201 B 1 
HETATM 4 C C14 RET . . . M 2 -4.492 66.55 -45.719 1 75.34 ? C14 RET 201 B 1 
HETATM 5 C C15 RET . . . M 2 -3.054 66.589 -45.671 1 76.25 ? C15 RET 201 B 1 
HETATM 6 O O1 RET . . . M 2 -2.419 67.551 -45.287 1 76.39 ? O1 RET 201 B 1 
HETATM 7 C C20 RET . . . M 2 -4.728 64.215 -46.613 1 70.05 ? C20 RET 201 B 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           404 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           7 
#