data_6MCW # _model_server_result.job_id Im_EFRXtbbhwFgUfuGM-mg _model_server_result.datetime_utc '2024-12-02 20:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6MCW # _exptl.entry_id 6MCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.744 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 23-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]-3,6,9,12,15,18,21-heptaoxatricosan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MCW _cell.length_a 150.685 _cell.length_b 150.685 _cell.length_c 66.321 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 394 A CYS 394 1_555 C FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 C FE HEM . A HEM 602 1_555 D O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C30 H54 O9' _chem_comp.formula_weight 558.744 _chem_comp.id JDJ _chem_comp.mon_nstd_flag . _chem_comp.name 23-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]-3,6,9,12,15,18,21-heptaoxatricosan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Anapoe-X-114 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CBI JDJ sing 255 n n CAC CBI JDJ sing 256 n n CBI CAA JDJ sing 257 n n CBI CAY JDJ sing 258 n n CAE CBJ JDJ sing 259 n n CAY CBJ JDJ sing 260 n n CBJ CAD JDJ sing 261 n n CBJ CBH JDJ sing 262 n n CAI CBH JDJ doub 263 n y CAI CAG JDJ sing 264 n y CBH CAJ JDJ sing 265 n y CAG CBG JDJ doub 266 n y CAJ CAH JDJ doub 267 n y CBG CAH JDJ sing 268 n y CBG OBF JDJ sing 269 n n OBF CAX JDJ sing 270 n n CAX CAW JDJ sing 271 n n CAW OBE JDJ sing 272 n n OBE CAV JDJ sing 273 n n CAV CAU JDJ sing 274 n n OAF CAK JDJ sing 275 n n CAK CAL JDJ sing 276 n n CAL OAZ JDJ sing 277 n n CAU OBD JDJ sing 278 n n OBD CAT JDJ sing 279 n n CAS CAT JDJ sing 280 n n CAS OBC JDJ sing 281 n n OAZ CAM JDJ sing 282 n n OBC CAR JDJ sing 283 n n CAM CAN JDJ sing 284 n n CAR CAQ JDJ sing 285 n n CAQ OBB JDJ sing 286 n n CAO CAP JDJ sing 287 n n CAO OBA JDJ sing 288 n n OBB CAP JDJ sing 289 n n CAN OBA JDJ sing 290 n n CAA H1 JDJ sing 291 n n CAA H2 JDJ sing 292 n n CAA H3 JDJ sing 293 n n CAB H4 JDJ sing 294 n n CAB H5 JDJ sing 295 n n CAB H6 JDJ sing 296 n n CAC H7 JDJ sing 297 n n CAC H8 JDJ sing 298 n n CAC H9 JDJ sing 299 n n CAY H10 JDJ sing 300 n n CAY H11 JDJ sing 301 n n CAD H12 JDJ sing 302 n n CAD H13 JDJ sing 303 n n CAD H14 JDJ sing 304 n n CAE H15 JDJ sing 305 n n CAE H16 JDJ sing 306 n n CAE H17 JDJ sing 307 n n CAJ H18 JDJ sing 308 n n CAH H19 JDJ sing 309 n n CAI H20 JDJ sing 310 n n CAG H21 JDJ sing 311 n n CAX H22 JDJ sing 312 n n CAX H23 JDJ sing 313 n n CAW H24 JDJ sing 314 n n CAW H25 JDJ sing 315 n n CAV H26 JDJ sing 316 n n CAV H27 JDJ sing 317 n n CAU H28 JDJ sing 318 n n CAU H29 JDJ sing 319 n n CAT H30 JDJ sing 320 n n CAT H31 JDJ sing 321 n n CAS H32 JDJ sing 322 n n CAS H33 JDJ sing 323 n n CAR H34 JDJ sing 324 n n CAR H35 JDJ sing 325 n n CAQ H36 JDJ sing 326 n n CAQ H37 JDJ sing 327 n n CAP H38 JDJ sing 328 n n CAP H39 JDJ sing 329 n n CAO H40 JDJ sing 330 n n CAO H41 JDJ sing 331 n n CAN H42 JDJ sing 332 n n CAN H43 JDJ sing 333 n n CAM H44 JDJ sing 334 n n CAM H45 JDJ sing 335 n n CAL H46 JDJ sing 336 n n CAL H47 JDJ sing 337 n n CAK H48 JDJ sing 338 n n CAK H49 JDJ sing 339 n n OAF C1 JDJ sing 340 n n C1 C2 JDJ sing 341 n n C2 O1 JDJ sing 342 n n C1 H50 JDJ sing 343 n n C1 H51 JDJ sing 344 n n C2 H52 JDJ sing 345 n n C2 H53 JDJ sing 346 n n O1 H54 JDJ sing 347 n n # _atom_sites.entry_id 6MCW _atom_sites.fract_transf_matrix[1][1] 0.006636 _atom_sites.fract_transf_matrix[1][2] 0.003832 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JDJ A 1 601 501 JDJ DRG . C 3 HEM A 1 602 480 HEM HEM . D 4 HOH A 1 701 501 HOH HOH . D 4 HOH A 2 702 13 HOH HOH . D 4 HOH A 3 703 1 HOH HOH . D 4 HOH A 4 704 30 HOH HOH . D 4 HOH A 5 705 42 HOH HOH . D 4 HOH A 6 706 26 HOH HOH . D 4 HOH A 7 707 6 HOH HOH . D 4 HOH A 8 708 39 HOH HOH . D 4 HOH A 9 709 3 HOH HOH . D 4 HOH A 10 710 41 HOH HOH . D 4 HOH A 11 711 61 HOH HOH . D 4 HOH A 12 712 9 HOH HOH . D 4 HOH A 13 713 11 HOH HOH . D 4 HOH A 14 714 20 HOH HOH . D 4 HOH A 15 715 12 HOH HOH . D 4 HOH A 16 716 79 HOH HOH . D 4 HOH A 17 717 31 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 46 HOH HOH . D 4 HOH A 20 720 36 HOH HOH . D 4 HOH A 21 721 73 HOH HOH . D 4 HOH A 22 722 43 HOH HOH . D 4 HOH A 23 723 82 HOH HOH . D 4 HOH A 24 724 27 HOH HOH . D 4 HOH A 25 725 21 HOH HOH . D 4 HOH A 26 726 33 HOH HOH . D 4 HOH A 27 727 2 HOH HOH . D 4 HOH A 28 728 35 HOH HOH . D 4 HOH A 29 729 108 HOH HOH . D 4 HOH A 30 730 62 HOH HOH . D 4 HOH A 31 731 70 HOH HOH . D 4 HOH A 32 732 80 HOH HOH . D 4 HOH A 33 733 119 HOH HOH . D 4 HOH A 34 734 123 HOH HOH . D 4 HOH A 35 735 122 HOH HOH . D 4 HOH A 36 736 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA JDJ . . . B 2 51.956 27.403 4.413 1 100.63 ? CAA JDJ 601 A 1 HETATM 2 C CBI JDJ . . . B 2 50.611 26.826 3.978 1 95.23 ? CBI JDJ 601 A 1 HETATM 3 C CAB JDJ . . . B 2 49.861 27.84 3.116 1 95.01 ? CAB JDJ 601 A 1 HETATM 4 C CAC JDJ . . . B 2 50.79 25.513 3.218 1 93.63 ? CAC JDJ 601 A 1 HETATM 5 C CAY JDJ . . . B 2 49.711 26.619 5.197 1 99.89 ? CAY JDJ 601 A 1 HETATM 6 C CBJ JDJ . . . B 2 49.52 25.179 5.683 1 93.34 ? CBJ JDJ 601 A 1 HETATM 7 C CAD JDJ . . . B 2 50.796 24.61 6.308 1 88.9 ? CAD JDJ 601 A 1 HETATM 8 C CAE JDJ . . . B 2 49.035 24.258 4.561 1 91.25 ? CAE JDJ 601 A 1 HETATM 9 C CBH JDJ . . . B 2 48.504 25.312 6.623 1 94.14 ? CBH JDJ 601 A 1 HETATM 10 C CAJ JDJ . . . B 2 48.536 24.695 7.868 1 81.59 ? CAJ JDJ 601 A 1 HETATM 11 C CAH JDJ . . . B 2 47.54 24.974 8.799 1 86.09 ? CAH JDJ 601 A 1 HETATM 12 C CAI JDJ . . . B 2 47.581 26.325 6.386 1 92.52 ? CAI JDJ 601 A 1 HETATM 13 C CAG JDJ . . . B 2 46.58 26.596 7.308 1 93.51 ? CAG JDJ 601 A 1 HETATM 14 C CBG JDJ . . . B 2 46.564 25.928 8.526 1 93.78 ? CBG JDJ 601 A 1 HETATM 15 O OBF JDJ . . . B 2 45.552 26.193 9.397 1 104.79 ? OBF JDJ 601 A 1 HETATM 16 C CAX JDJ . . . B 2 45.751 25.636 10.7 1 115.19 ? CAX JDJ 601 A 1 HETATM 17 C CAW JDJ . . . B 2 44.913 26.411 11.72 1 119.34 ? CAW JDJ 601 A 1 HETATM 18 O OBE JDJ . . . B 2 44.919 25.728 12.977 1 114.64 ? OBE JDJ 601 A 1 HETATM 19 C CAV JDJ . . . B 2 43.588 25.424 13.404 1 112.05 ? CAV JDJ 601 A 1 HETATM 20 C CAU JDJ . . . B 2 42.963 26.667 14.042 1 115.17 ? CAU JDJ 601 A 1 HETATM 21 O OBD JDJ . . . B 2 41.585 26.431 14.351 1 120.1 ? OBD JDJ 601 A 1 HETATM 22 C CAT JDJ . . . B 2 41.079 27.552 15.081 1 126.29 ? CAT JDJ 601 A 1 HETATM 23 C CAS JDJ . . . B 2 39.577 27.714 14.833 1 124.67 ? CAS JDJ 601 A 1 HETATM 24 O OBC JDJ . . . B 2 38.841 27.029 15.851 1 119.54 ? OBC JDJ 601 A 1 HETATM 25 C CAR JDJ . . . B 2 37.745 27.821 16.317 1 126.87 ? CAR JDJ 601 A 1 HETATM 26 C CAQ JDJ . . . B 2 36.574 26.903 16.679 1 129.81 ? CAQ JDJ 601 A 1 HETATM 27 O OBB JDJ . . . B 2 35.577 27.646 17.388 1 130.69 ? OBB JDJ 601 A 1 HETATM 28 C CAP JDJ . . . B 2 34.387 26.868 17.542 1 126.49 ? CAP JDJ 601 A 1 HETATM 29 C CAO JDJ . . . B 2 33.174 27.716 17.151 1 128.56 ? CAO JDJ 601 A 1 HETATM 30 O OBA JDJ . . . B 2 33.131 28.901 17.952 1 128.1 ? OBA JDJ 601 A 1 HETATM 31 C CAN JDJ . . . B 2 32.12 29.795 17.477 1 121.01 ? CAN JDJ 601 A 1 HETATM 32 C CAM JDJ . . . B 2 32.213 29.903 15.953 1 123.39 ? CAM JDJ 601 A 1 HETATM 33 O OAZ JDJ . . . B 2 31.126 30.687 15.452 1 116.15 ? OAZ JDJ 601 A 1 HETATM 34 C CAL JDJ . . . B 2 31.021 30.503 14.038 1 117.52 ? CAL JDJ 601 A 1 HETATM 35 C CAK JDJ . . . B 2 29.61 30.025 13.687 1 111.89 ? CAK JDJ 601 A 1 HETATM 36 O OAF JDJ . . . B 2 29.622 28.614 13.458 1 106.45 ? OAF JDJ 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #