data_6MCW # _model_server_result.job_id JpJqJ0t1kPyYzWtWJ2H0fQ _model_server_result.datetime_utc '2024-10-14 01:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6MCW # _exptl.entry_id 6MCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MCW _cell.length_a 150.685 _cell.length_b 150.685 _cell.length_c 66.321 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 394 A CYS 394 1_555 C FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 C FE HEM . A HEM 602 1_555 D O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6MCW _atom_sites.fract_transf_matrix[1][1] 0.006636 _atom_sites.fract_transf_matrix[1][2] 0.003832 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JDJ A 1 601 501 JDJ DRG . C 3 HEM A 1 602 480 HEM HEM . D 4 HOH A 1 701 501 HOH HOH . D 4 HOH A 2 702 13 HOH HOH . D 4 HOH A 3 703 1 HOH HOH . D 4 HOH A 4 704 30 HOH HOH . D 4 HOH A 5 705 42 HOH HOH . D 4 HOH A 6 706 26 HOH HOH . D 4 HOH A 7 707 6 HOH HOH . D 4 HOH A 8 708 39 HOH HOH . D 4 HOH A 9 709 3 HOH HOH . D 4 HOH A 10 710 41 HOH HOH . D 4 HOH A 11 711 61 HOH HOH . D 4 HOH A 12 712 9 HOH HOH . D 4 HOH A 13 713 11 HOH HOH . D 4 HOH A 14 714 20 HOH HOH . D 4 HOH A 15 715 12 HOH HOH . D 4 HOH A 16 716 79 HOH HOH . D 4 HOH A 17 717 31 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 46 HOH HOH . D 4 HOH A 20 720 36 HOH HOH . D 4 HOH A 21 721 73 HOH HOH . D 4 HOH A 22 722 43 HOH HOH . D 4 HOH A 23 723 82 HOH HOH . D 4 HOH A 24 724 27 HOH HOH . D 4 HOH A 25 725 21 HOH HOH . D 4 HOH A 26 726 33 HOH HOH . D 4 HOH A 27 727 2 HOH HOH . D 4 HOH A 28 728 35 HOH HOH . D 4 HOH A 29 729 108 HOH HOH . D 4 HOH A 30 730 62 HOH HOH . D 4 HOH A 31 731 70 HOH HOH . D 4 HOH A 32 732 80 HOH HOH . D 4 HOH A 33 733 119 HOH HOH . D 4 HOH A 34 734 123 HOH HOH . D 4 HOH A 35 735 122 HOH HOH . D 4 HOH A 36 736 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 53.577 23.711 3.183 1 41.18 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . C 3 53.771 20.113 6.401 1 38.37 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . C 3 56.055 23.042 9.566 1 41.84 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . C 3 55.936 26.614 6.267 1 37.02 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . C 3 53.432 22.487 3.807 1 40.92 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . C 3 52.829 21.367 3.199 1 41.59 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . C 3 52.924 20.342 4.083 1 41.88 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . C 3 53.504 20.851 5.263 1 41.13 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . C 3 52.435 18.936 3.848 1 37.17 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . C 3 52.366 21.25 1.769 1 40.47 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . C 3 50.839 21.317 1.685 1 42.64 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . C 3 50.361 21.013 0.288 1 44.29 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . C 3 51.143 20.561 -0.578 1 43.91 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . C 3 49.162 21.206 -0.008 1 50.82 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . C 3 54.434 20.659 7.505 1 38.89 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . C 3 54.693 19.835 8.629 1 41.46 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . C 3 55.346 20.6 9.545 1 38.79 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . C 3 55.438 21.956 8.941 1 39.85 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . C 3 54.35 18.374 8.774 1 40.5 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . C 3 55.715 20.038 10.86 1 37.76 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . C 3 56.596 20.59 11.688 1 43.17 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . C 3 56.227 24.282 8.955 1 45.51 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . C 3 56.892 25.401 9.49 1 42.02 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . C 3 56.843 26.42 8.552 1 41.95 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . C 3 56.159 25.899 7.423 1 41.37 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . C 3 57.508 25.48 10.864 1 40.45 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . C 3 57.355 27.803 8.619 1 44.59 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . C 3 57.931 28.304 9.707 1 50.16 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . C 3 55.275 26.046 5.174 1 38.18 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . C 3 55.064 26.837 3.953 1 44.53 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . C 3 54.42 26.023 3.094 1 45.17 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . C 3 54.245 24.757 3.816 1 42.2 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . C 3 55.435 28.276 3.698 1 48.72 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . C 3 53.93 26.359 1.709 1 44.84 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . C 3 54.897 25.791 0.67 1 47.69 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . C 3 54.434 26.115 -0.728 1 48.18 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . C 3 55.259 26.558 -1.557 1 52.02 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . C 3 53.265 25.859 -1.093 1 45.88 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . C 3 53.868 22.162 5.071 1 40.27 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . C 3 54.896 21.896 7.715 1 37.61 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . C 3 55.802 24.597 7.686 1 40.12 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . C 3 54.782 24.809 5.041 1 42.44 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . C 3 54.828 23.416 6.267 1 38.58 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #