data_6MD1 # _model_server_result.job_id lmyC_Cw4N-ETf_XYIEJlyg _model_server_result.datetime_utc '2024-11-24 00:59:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6md1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6MD1 # _exptl.entry_id 6MD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.675 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.15 _cell.angle_gamma 90 _cell.entry_id 6MD1 _cell.length_a 92.783 _cell.length_b 61.656 _cell.length_c 118.631 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 83 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id GW9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GW9 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.594 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H9 Cl N2 O3' _chem_comp.formula_weight 276.675 _chem_comp.id GW9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C9 GW9 sing 129 n n C9 C10 GW9 doub 130 n y C9 C8 GW9 sing 131 n y C10 C11 GW9 sing 132 n y C10 H10 GW9 sing 133 n n C11 C12 GW9 doub 134 n y C11 H11 GW9 sing 135 n n C12 N2 GW9 sing 136 n n C12 C13 GW9 sing 137 n y N2 O3 GW9 sing 138 n n N2 O2 GW9 doub 139 n n C13 C8 GW9 doub 140 n y C13 H13 GW9 sing 141 n n C8 C1 GW9 sing 142 n n C1 O1 GW9 doub 143 n n C1 N1 GW9 sing 144 n n N1 C2 GW9 sing 145 n n N1 HN1 GW9 sing 146 n n C2 C7 GW9 doub 147 n y C2 C3 GW9 sing 148 n y C7 C6 GW9 sing 149 n y C7 H7 GW9 sing 150 n n C6 C5 GW9 doub 151 n y C6 H6 GW9 sing 152 n n C5 C4 GW9 sing 153 n y C5 H5 GW9 sing 154 n n C4 C3 GW9 doub 155 n y C4 H4 GW9 sing 156 n n C3 H3 GW9 sing 157 n n # _atom_sites.entry_id 6MD1 _atom_sites.fract_transf_matrix[1][1] 0.010778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLA A 1 501 501 OLA OLA . D 3 GW9 B 1 501 501 GW9 GW9 . E 2 OLA B 1 502 502 OLA OLA . F 4 HOH A 1 601 601 HOH HOH . F 4 HOH A 2 602 602 HOH HOH . F 4 HOH A 3 603 603 HOH HOH . F 4 HOH A 4 604 604 HOH HOH . F 4 HOH A 5 605 605 HOH HOH . F 4 HOH A 6 606 606 HOH HOH . F 4 HOH A 7 607 607 HOH HOH . F 4 HOH A 8 608 608 HOH HOH . F 4 HOH A 9 609 609 HOH HOH . F 4 HOH A 10 610 610 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 612 HOH HOH . F 4 HOH A 13 613 613 HOH HOH . F 4 HOH A 14 614 614 HOH HOH . F 4 HOH A 15 615 615 HOH HOH . F 4 HOH A 16 616 616 HOH HOH . F 4 HOH A 17 617 617 HOH HOH . F 4 HOH A 18 618 618 HOH HOH . F 4 HOH A 19 619 619 HOH HOH . F 4 HOH A 20 620 620 HOH HOH . F 4 HOH A 21 621 621 HOH HOH . F 4 HOH A 22 622 622 HOH HOH . F 4 HOH A 23 623 623 HOH HOH . F 4 HOH A 24 624 624 HOH HOH . F 4 HOH A 25 625 625 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 627 HOH HOH . F 4 HOH A 28 628 628 HOH HOH . F 4 HOH A 29 629 629 HOH HOH . F 4 HOH A 30 630 630 HOH HOH . F 4 HOH A 31 631 631 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 633 HOH HOH . F 4 HOH A 34 634 634 HOH HOH . F 4 HOH A 35 635 635 HOH HOH . F 4 HOH A 36 636 636 HOH HOH . F 4 HOH A 37 637 637 HOH HOH . F 4 HOH A 38 638 638 HOH HOH . F 4 HOH A 39 639 639 HOH HOH . F 4 HOH A 40 640 640 HOH HOH . F 4 HOH A 41 641 641 HOH HOH . F 4 HOH A 42 642 642 HOH HOH . F 4 HOH A 43 643 643 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . F 4 HOH A 49 649 649 HOH HOH . F 4 HOH A 50 650 650 HOH HOH . F 4 HOH A 51 651 651 HOH HOH . F 4 HOH A 52 652 652 HOH HOH . F 4 HOH A 53 653 653 HOH HOH . F 4 HOH A 54 654 654 HOH HOH . F 4 HOH A 55 655 655 HOH HOH . F 4 HOH A 56 656 656 HOH HOH . F 4 HOH A 57 657 657 HOH HOH . F 4 HOH A 58 658 658 HOH HOH . F 4 HOH A 59 659 659 HOH HOH . F 4 HOH A 60 660 660 HOH HOH . F 4 HOH A 61 661 661 HOH HOH . F 4 HOH A 62 662 662 HOH HOH . F 4 HOH A 63 663 663 HOH HOH . F 4 HOH A 64 664 664 HOH HOH . F 4 HOH A 65 665 665 HOH HOH . F 4 HOH A 66 666 666 HOH HOH . F 4 HOH A 67 667 667 HOH HOH . F 4 HOH A 68 668 668 HOH HOH . F 4 HOH A 69 669 669 HOH HOH . F 4 HOH A 70 670 670 HOH HOH . F 4 HOH A 71 671 671 HOH HOH . F 4 HOH A 72 672 672 HOH HOH . F 4 HOH A 73 673 673 HOH HOH . F 4 HOH A 74 674 674 HOH HOH . F 4 HOH A 75 675 675 HOH HOH . F 4 HOH A 76 676 676 HOH HOH . F 4 HOH A 77 677 677 HOH HOH . F 4 HOH A 78 678 678 HOH HOH . F 4 HOH A 79 679 679 HOH HOH . F 4 HOH A 80 680 680 HOH HOH . F 4 HOH A 81 681 681 HOH HOH . F 4 HOH A 82 682 682 HOH HOH . F 4 HOH A 83 683 683 HOH HOH . F 4 HOH A 84 684 684 HOH HOH . F 4 HOH A 85 685 685 HOH HOH . F 4 HOH A 86 686 686 HOH HOH . F 4 HOH A 87 687 687 HOH HOH . F 4 HOH A 88 688 688 HOH HOH . F 4 HOH A 89 689 689 HOH HOH . F 4 HOH A 90 690 690 HOH HOH . F 4 HOH A 91 691 691 HOH HOH . F 4 HOH A 92 692 692 HOH HOH . F 4 HOH A 93 693 693 HOH HOH . F 4 HOH A 94 694 694 HOH HOH . F 4 HOH A 95 695 695 HOH HOH . F 4 HOH A 96 696 696 HOH HOH . F 4 HOH A 97 697 697 HOH HOH . F 4 HOH A 98 698 698 HOH HOH . F 4 HOH A 99 699 699 HOH HOH . F 4 HOH A 100 700 700 HOH HOH . F 4 HOH A 101 701 701 HOH HOH . F 4 HOH A 102 702 702 HOH HOH . F 4 HOH A 103 703 703 HOH HOH . F 4 HOH A 104 704 704 HOH HOH . F 4 HOH A 105 705 705 HOH HOH . F 4 HOH A 106 706 706 HOH HOH . F 4 HOH A 107 707 707 HOH HOH . F 4 HOH A 108 708 708 HOH HOH . F 4 HOH A 109 709 709 HOH HOH . F 4 HOH A 110 710 710 HOH HOH . F 4 HOH A 111 711 711 HOH HOH . F 4 HOH A 112 712 712 HOH HOH . F 4 HOH A 113 713 713 HOH HOH . F 4 HOH A 114 714 714 HOH HOH . F 4 HOH A 115 715 715 HOH HOH . F 4 HOH A 116 716 716 HOH HOH . F 4 HOH A 117 717 717 HOH HOH . F 4 HOH A 118 718 718 HOH HOH . F 4 HOH A 119 719 719 HOH HOH . F 4 HOH A 120 720 720 HOH HOH . F 4 HOH A 121 721 721 HOH HOH . F 4 HOH A 122 722 722 HOH HOH . F 4 HOH A 123 723 723 HOH HOH . F 4 HOH A 124 724 724 HOH HOH . F 4 HOH A 125 725 725 HOH HOH . F 4 HOH A 126 726 726 HOH HOH . F 4 HOH A 127 727 727 HOH HOH . F 4 HOH A 128 728 728 HOH HOH . F 4 HOH A 129 729 729 HOH HOH . F 4 HOH A 130 730 730 HOH HOH . F 4 HOH A 131 731 731 HOH HOH . F 4 HOH A 132 732 732 HOH HOH . F 4 HOH A 133 733 733 HOH HOH . F 4 HOH A 134 734 734 HOH HOH . G 4 HOH B 1 601 601 HOH HOH . G 4 HOH B 2 602 602 HOH HOH . G 4 HOH B 3 603 603 HOH HOH . G 4 HOH B 4 604 604 HOH HOH . G 4 HOH B 5 605 605 HOH HOH . G 4 HOH B 6 606 606 HOH HOH . G 4 HOH B 7 607 607 HOH HOH . G 4 HOH B 8 608 608 HOH HOH . G 4 HOH B 9 609 609 HOH HOH . G 4 HOH B 10 610 610 HOH HOH . G 4 HOH B 11 611 611 HOH HOH . G 4 HOH B 12 612 612 HOH HOH . G 4 HOH B 13 613 613 HOH HOH . G 4 HOH B 14 614 614 HOH HOH . G 4 HOH B 15 615 615 HOH HOH . G 4 HOH B 16 616 616 HOH HOH . G 4 HOH B 17 617 617 HOH HOH . G 4 HOH B 18 618 618 HOH HOH . G 4 HOH B 19 619 619 HOH HOH . G 4 HOH B 20 620 620 HOH HOH . G 4 HOH B 21 621 621 HOH HOH . G 4 HOH B 22 622 622 HOH HOH . G 4 HOH B 23 623 623 HOH HOH . G 4 HOH B 24 624 624 HOH HOH . G 4 HOH B 25 625 625 HOH HOH . G 4 HOH B 26 626 626 HOH HOH . G 4 HOH B 27 627 627 HOH HOH . G 4 HOH B 28 628 628 HOH HOH . G 4 HOH B 29 629 629 HOH HOH . G 4 HOH B 30 630 630 HOH HOH . G 4 HOH B 31 631 631 HOH HOH . G 4 HOH B 32 632 632 HOH HOH . G 4 HOH B 33 633 633 HOH HOH . G 4 HOH B 34 634 634 HOH HOH . G 4 HOH B 35 635 635 HOH HOH . G 4 HOH B 36 636 636 HOH HOH . G 4 HOH B 37 637 637 HOH HOH . G 4 HOH B 38 638 638 HOH HOH . G 4 HOH B 39 639 639 HOH HOH . G 4 HOH B 40 640 640 HOH HOH . G 4 HOH B 41 641 641 HOH HOH . G 4 HOH B 42 642 642 HOH HOH . G 4 HOH B 43 643 643 HOH HOH . G 4 HOH B 44 644 644 HOH HOH . G 4 HOH B 45 645 645 HOH HOH . G 4 HOH B 46 646 646 HOH HOH . G 4 HOH B 47 647 647 HOH HOH . G 4 HOH B 48 648 648 HOH HOH . G 4 HOH B 49 649 649 HOH HOH . G 4 HOH B 50 650 650 HOH HOH . G 4 HOH B 51 651 651 HOH HOH . G 4 HOH B 52 652 652 HOH HOH . G 4 HOH B 53 653 653 HOH HOH . G 4 HOH B 54 654 654 HOH HOH . G 4 HOH B 55 655 655 HOH HOH . G 4 HOH B 56 656 656 HOH HOH . G 4 HOH B 57 657 657 HOH HOH . G 4 HOH B 58 658 658 HOH HOH . G 4 HOH B 59 659 659 HOH HOH . G 4 HOH B 60 660 660 HOH HOH . G 4 HOH B 61 661 661 HOH HOH . G 4 HOH B 62 662 662 HOH HOH . G 4 HOH B 63 663 663 HOH HOH . G 4 HOH B 64 664 664 HOH HOH . G 4 HOH B 65 665 665 HOH HOH . G 4 HOH B 66 666 666 HOH HOH . G 4 HOH B 67 667 667 HOH HOH . G 4 HOH B 68 668 668 HOH HOH . G 4 HOH B 69 669 669 HOH HOH . G 4 HOH B 70 670 670 HOH HOH . G 4 HOH B 71 671 698 HOH HOH . G 4 HOH B 72 672 671 HOH HOH . G 4 HOH B 73 673 672 HOH HOH . G 4 HOH B 74 674 673 HOH HOH . G 4 HOH B 75 675 674 HOH HOH . G 4 HOH B 76 676 675 HOH HOH . G 4 HOH B 77 677 676 HOH HOH . G 4 HOH B 78 678 677 HOH HOH . G 4 HOH B 79 679 678 HOH HOH . G 4 HOH B 80 680 679 HOH HOH . G 4 HOH B 81 681 680 HOH HOH . G 4 HOH B 82 682 681 HOH HOH . G 4 HOH B 83 683 682 HOH HOH . G 4 HOH B 84 684 683 HOH HOH . G 4 HOH B 85 685 684 HOH HOH . G 4 HOH B 86 686 685 HOH HOH . G 4 HOH B 87 687 686 HOH HOH . G 4 HOH B 88 688 687 HOH HOH . G 4 HOH B 89 689 688 HOH HOH . G 4 HOH B 90 690 689 HOH HOH . G 4 HOH B 91 691 690 HOH HOH . G 4 HOH B 92 692 691 HOH HOH . G 4 HOH B 93 693 692 HOH HOH . G 4 HOH B 94 694 693 HOH HOH . G 4 HOH B 95 695 694 HOH HOH . G 4 HOH B 96 696 695 HOH HOH . G 4 HOH B 97 697 696 HOH HOH . G 4 HOH B 98 698 697 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 GW9 . . . D 3 38.51 38.919 37.069 1 47.58 ? C9 GW9 501 B 1 HETATM 2 C C10 GW9 . . . D 3 39.482 39.833 36.696 1 48.66 ? C10 GW9 501 B 1 HETATM 3 C C11 GW9 . . . D 3 39.833 39.964 35.362 1 49.93 ? C11 GW9 501 B 1 HETATM 4 C C12 GW9 . . . D 3 39.219 39.18 34.402 1 49.58 ? C12 GW9 501 B 1 HETATM 5 N N2 GW9 . . . D 3 39.597 39.318 33.002 1 52.92 ? N2 GW9 501 B 1 HETATM 6 O O3 GW9 . . . D 3 40.903 39.715 32.666 1 55 ? O3 GW9 501 B 1 HETATM 7 O O2 GW9 . . . D 3 38.813 39.096 32.154 1 52.85 ? O2 GW9 501 B 1 HETATM 8 C C13 GW9 . . . D 3 38.25 38.263 34.776 1 47.51 ? C13 GW9 501 B 1 HETATM 9 C C8 GW9 . . . D 3 37.894 38.135 36.112 1 46.47 ? C8 GW9 501 B 1 HETATM 10 C C1 GW9 . . . D 3 36.833 37.118 36.524 1 43.02 ? C1 GW9 501 B 1 HETATM 11 O O1 GW9 . . . D 3 35.689 37.423 36.589 1 43 ? O1 GW9 501 B 1 HETATM 12 N N1 GW9 . . . D 3 37.263 35.773 36.837 1 40.23 ? N1 GW9 501 B 1 HETATM 13 C C2 GW9 . . . D 3 36.327 34.751 37.231 1 38.48 ? C2 GW9 501 B 1 HETATM 14 C C7 GW9 . . . D 3 35.799 33.896 36.277 1 35.66 ? C7 GW9 501 B 1 HETATM 15 C C6 GW9 . . . D 3 34.904 32.909 36.649 1 34.97 ? C6 GW9 501 B 1 HETATM 16 C C5 GW9 . . . D 3 34.538 32.777 37.979 1 36.14 ? C5 GW9 501 B 1 HETATM 17 C C4 GW9 . . . D 3 35.068 33.629 38.932 1 38.99 ? C4 GW9 501 B 1 HETATM 18 C C3 GW9 . . . D 3 35.964 34.617 38.559 1 41.32 ? C3 GW9 501 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 18 #