data_6MD4 # _model_server_result.job_id xeWcu6Wp8WrAyhasHpgXjw _model_server_result.datetime_utc '2024-11-27 18:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6md4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6MD4 # _exptl.entry_id 6MD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-THIAZOLIDIINEDIONE,5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.34 _cell.angle_gamma 90 _cell.entry_id 6MD4 _cell.length_a 92.829 _cell.length_b 61.834 _cell.length_c 118.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 N3 O3 S' _chem_comp.formula_weight 357.427 _chem_comp.id BRL _chem_comp.mon_nstd_flag . _chem_comp.name '2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BRL49653;ROSIGLITAZONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C2 BRL sing 70 n n S1 C5 BRL sing 71 n n O2 C2 BRL doub 72 n n O4 C4 BRL doub 73 n n O13 C10 BRL sing 74 n n O13 C14 BRL sing 75 n n N3 C2 BRL sing 76 n n N3 C4 BRL sing 77 n n N3 HN3 BRL sing 78 n n N16 C15 BRL sing 79 n n N16 C16 BRL sing 80 n n N16 C17 BRL sing 81 n n N18 C17 BRL doub 82 n y N18 C19 BRL sing 83 n y C4 C5 BRL sing 84 n n C5 C6 BRL sing 85 n n C5 H5 BRL sing 86 n n C6 C7 BRL sing 87 n n C6 H61 BRL sing 88 n n C6 H62 BRL sing 89 n n C7 C8 BRL doub 90 n y C7 C12 BRL sing 91 n y C8 C9 BRL sing 92 n y C8 H8 BRL sing 93 n n C9 C10 BRL doub 94 n y C9 H9 BRL sing 95 n n C10 C11 BRL sing 96 n y C11 C12 BRL doub 97 n y C11 H11 BRL sing 98 n n C12 H12 BRL sing 99 n n C14 C15 BRL sing 100 n n C14 H141 BRL sing 101 n n C14 H142 BRL sing 102 n n C15 H151 BRL sing 103 n n C15 H152 BRL sing 104 n n C16 H161 BRL sing 105 n n C16 H162 BRL sing 106 n n C16 H163 BRL sing 107 n n C17 C22 BRL sing 108 n y C19 C20 BRL doub 109 n y C19 H19 BRL sing 110 n n C20 C21 BRL sing 111 n y C20 H20 BRL sing 112 n n C21 C22 BRL doub 113 n y C21 H21 BRL sing 114 n n C22 H22 BRL sing 115 n n # _atom_sites.entry_id 6MD4 _atom_sites.fract_transf_matrix[1][1] 0.010772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BRL A 1 501 501 BRL BRL . D 3 OLA A 1 502 503 OLA OLA . E 4 HOH A 1 601 24 HOH HOH . E 4 HOH A 2 602 21 HOH HOH . E 4 HOH A 3 603 192 HOH HOH . E 4 HOH A 4 604 85 HOH HOH . E 4 HOH A 5 605 45 HOH HOH . E 4 HOH A 6 606 140 HOH HOH . E 4 HOH A 7 607 95 HOH HOH . E 4 HOH A 8 608 38 HOH HOH . E 4 HOH A 9 609 181 HOH HOH . E 4 HOH A 10 610 180 HOH HOH . E 4 HOH A 11 611 209 HOH HOH . E 4 HOH A 12 612 48 HOH HOH . E 4 HOH A 13 613 98 HOH HOH . E 4 HOH A 14 614 150 HOH HOH . E 4 HOH A 15 615 30 HOH HOH . E 4 HOH A 16 616 81 HOH HOH . E 4 HOH A 17 617 112 HOH HOH . E 4 HOH A 18 618 157 HOH HOH . E 4 HOH A 19 619 13 HOH HOH . E 4 HOH A 20 620 7 HOH HOH . E 4 HOH A 21 621 172 HOH HOH . E 4 HOH A 22 622 184 HOH HOH . E 4 HOH A 23 623 122 HOH HOH . E 4 HOH A 24 624 58 HOH HOH . E 4 HOH A 25 625 138 HOH HOH . E 4 HOH A 26 626 12 HOH HOH . E 4 HOH A 27 627 80 HOH HOH . E 4 HOH A 28 628 94 HOH HOH . E 4 HOH A 29 629 143 HOH HOH . E 4 HOH A 30 630 28 HOH HOH . E 4 HOH A 31 631 185 HOH HOH . E 4 HOH A 32 632 43 HOH HOH . E 4 HOH A 33 633 130 HOH HOH . E 4 HOH A 34 634 59 HOH HOH . E 4 HOH A 35 635 115 HOH HOH . E 4 HOH A 36 636 123 HOH HOH . E 4 HOH A 37 637 19 HOH HOH . E 4 HOH A 38 638 8 HOH HOH . E 4 HOH A 39 639 37 HOH HOH . E 4 HOH A 40 640 107 HOH HOH . E 4 HOH A 41 641 208 HOH HOH . E 4 HOH A 42 642 16 HOH HOH . E 4 HOH A 43 643 197 HOH HOH . E 4 HOH A 44 644 62 HOH HOH . E 4 HOH A 45 645 216 HOH HOH . E 4 HOH A 46 646 26 HOH HOH . E 4 HOH A 47 647 61 HOH HOH . E 4 HOH A 48 648 36 HOH HOH . E 4 HOH A 49 649 86 HOH HOH . E 4 HOH A 50 650 199 HOH HOH . E 4 HOH A 51 651 9 HOH HOH . E 4 HOH A 52 652 40 HOH HOH . E 4 HOH A 53 653 100 HOH HOH . E 4 HOH A 54 654 198 HOH HOH . E 4 HOH A 55 655 33 HOH HOH . E 4 HOH A 56 656 2 HOH HOH . E 4 HOH A 57 657 166 HOH HOH . E 4 HOH A 58 658 129 HOH HOH . E 4 HOH A 59 659 6 HOH HOH . E 4 HOH A 60 660 111 HOH HOH . E 4 HOH A 61 661 18 HOH HOH . E 4 HOH A 62 662 148 HOH HOH . E 4 HOH A 63 663 137 HOH HOH . E 4 HOH A 64 664 158 HOH HOH . E 4 HOH A 65 665 106 HOH HOH . E 4 HOH A 66 666 142 HOH HOH . E 4 HOH A 67 667 200 HOH HOH . E 4 HOH A 68 668 50 HOH HOH . E 4 HOH A 69 669 126 HOH HOH . E 4 HOH A 70 670 72 HOH HOH . E 4 HOH A 71 671 70 HOH HOH . E 4 HOH A 72 672 92 HOH HOH . E 4 HOH A 73 673 41 HOH HOH . E 4 HOH A 74 674 91 HOH HOH . E 4 HOH A 75 675 160 HOH HOH . E 4 HOH A 76 676 27 HOH HOH . E 4 HOH A 77 677 52 HOH HOH . E 4 HOH A 78 678 178 HOH HOH . E 4 HOH A 79 679 65 HOH HOH . E 4 HOH A 80 680 39 HOH HOH . E 4 HOH A 81 681 194 HOH HOH . E 4 HOH A 82 682 88 HOH HOH . E 4 HOH A 83 683 104 HOH HOH . E 4 HOH A 84 684 78 HOH HOH . E 4 HOH A 85 685 215 HOH HOH . E 4 HOH A 86 686 67 HOH HOH . E 4 HOH A 87 687 189 HOH HOH . E 4 HOH A 88 688 161 HOH HOH . E 4 HOH A 89 689 3 HOH HOH . E 4 HOH A 90 690 222 HOH HOH . E 4 HOH A 91 691 202 HOH HOH . E 4 HOH A 92 692 102 HOH HOH . E 4 HOH A 93 693 51 HOH HOH . E 4 HOH A 94 694 175 HOH HOH . E 4 HOH A 95 695 79 HOH HOH . E 4 HOH A 96 696 207 HOH HOH . E 4 HOH A 97 697 168 HOH HOH . E 4 HOH A 98 698 170 HOH HOH . E 4 HOH A 99 699 136 HOH HOH . E 4 HOH A 100 700 162 HOH HOH . E 4 HOH A 101 701 127 HOH HOH . E 4 HOH A 102 702 174 HOH HOH . E 4 HOH A 103 703 214 HOH HOH . E 4 HOH A 104 704 114 HOH HOH . E 4 HOH A 105 705 210 HOH HOH . E 4 HOH A 106 706 169 HOH HOH . E 4 HOH A 107 707 224 HOH HOH . E 4 HOH A 108 708 205 HOH HOH . E 4 HOH A 109 709 188 HOH HOH . E 4 HOH A 110 710 176 HOH HOH . E 4 HOH A 111 711 201 HOH HOH . E 4 HOH A 112 712 152 HOH HOH . F 4 HOH B 1 501 159 HOH HOH . F 4 HOH B 2 502 32 HOH HOH . F 4 HOH B 3 503 196 HOH HOH . F 4 HOH B 4 504 22 HOH HOH . F 4 HOH B 5 505 117 HOH HOH . F 4 HOH B 6 506 187 HOH HOH . F 4 HOH B 7 507 74 HOH HOH . F 4 HOH B 8 508 54 HOH HOH . F 4 HOH B 9 509 139 HOH HOH . F 4 HOH B 10 510 31 HOH HOH . F 4 HOH B 11 511 4 HOH HOH . F 4 HOH B 12 512 83 HOH HOH . F 4 HOH B 13 513 109 HOH HOH . F 4 HOH B 14 514 99 HOH HOH . F 4 HOH B 15 515 154 HOH HOH . F 4 HOH B 16 516 68 HOH HOH . F 4 HOH B 17 517 220 HOH HOH . F 4 HOH B 18 518 110 HOH HOH . F 4 HOH B 19 519 82 HOH HOH . F 4 HOH B 20 520 167 HOH HOH . F 4 HOH B 21 521 64 HOH HOH . F 4 HOH B 22 522 124 HOH HOH . F 4 HOH B 23 523 163 HOH HOH . F 4 HOH B 24 524 213 HOH HOH . F 4 HOH B 25 525 47 HOH HOH . F 4 HOH B 26 526 116 HOH HOH . F 4 HOH B 27 527 211 HOH HOH . F 4 HOH B 28 528 17 HOH HOH . F 4 HOH B 29 529 1 HOH HOH . F 4 HOH B 30 530 186 HOH HOH . F 4 HOH B 31 531 219 HOH HOH . F 4 HOH B 32 532 5 HOH HOH . F 4 HOH B 33 533 10 HOH HOH . F 4 HOH B 34 534 77 HOH HOH . F 4 HOH B 35 535 133 HOH HOH . F 4 HOH B 36 536 218 HOH HOH . F 4 HOH B 37 537 195 HOH HOH . F 4 HOH B 38 538 135 HOH HOH . F 4 HOH B 39 539 75 HOH HOH . F 4 HOH B 40 540 97 HOH HOH . F 4 HOH B 41 541 23 HOH HOH . F 4 HOH B 42 542 223 HOH HOH . F 4 HOH B 43 543 15 HOH HOH . F 4 HOH B 44 544 25 HOH HOH . F 4 HOH B 45 545 34 HOH HOH . F 4 HOH B 46 546 71 HOH HOH . F 4 HOH B 47 547 204 HOH HOH . F 4 HOH B 48 548 69 HOH HOH . F 4 HOH B 49 549 44 HOH HOH . F 4 HOH B 50 550 101 HOH HOH . F 4 HOH B 51 551 53 HOH HOH . F 4 HOH B 52 552 212 HOH HOH . F 4 HOH B 53 553 105 HOH HOH . F 4 HOH B 54 554 183 HOH HOH . F 4 HOH B 55 555 217 HOH HOH . F 4 HOH B 56 556 14 HOH HOH . F 4 HOH B 57 557 42 HOH HOH . F 4 HOH B 58 558 103 HOH HOH . F 4 HOH B 59 559 193 HOH HOH . F 4 HOH B 60 560 146 HOH HOH . F 4 HOH B 61 561 155 HOH HOH . F 4 HOH B 62 562 132 HOH HOH . F 4 HOH B 63 563 128 HOH HOH . F 4 HOH B 64 564 20 HOH HOH . F 4 HOH B 65 565 73 HOH HOH . F 4 HOH B 66 566 60 HOH HOH . F 4 HOH B 67 567 11 HOH HOH . F 4 HOH B 68 568 56 HOH HOH . F 4 HOH B 69 569 87 HOH HOH . F 4 HOH B 70 570 63 HOH HOH . F 4 HOH B 71 571 177 HOH HOH . F 4 HOH B 72 572 125 HOH HOH . F 4 HOH B 73 573 29 HOH HOH . F 4 HOH B 74 574 145 HOH HOH . F 4 HOH B 75 575 120 HOH HOH . F 4 HOH B 76 576 57 HOH HOH . F 4 HOH B 77 577 131 HOH HOH . F 4 HOH B 78 578 173 HOH HOH . F 4 HOH B 79 579 55 HOH HOH . F 4 HOH B 80 580 49 HOH HOH . F 4 HOH B 81 581 93 HOH HOH . F 4 HOH B 82 582 165 HOH HOH . F 4 HOH B 83 583 66 HOH HOH . F 4 HOH B 84 584 89 HOH HOH . F 4 HOH B 85 585 118 HOH HOH . F 4 HOH B 86 586 191 HOH HOH . F 4 HOH B 87 587 225 HOH HOH . F 4 HOH B 88 588 46 HOH HOH . F 4 HOH B 89 589 221 HOH HOH . F 4 HOH B 90 590 76 HOH HOH . F 4 HOH B 91 591 96 HOH HOH . F 4 HOH B 92 592 164 HOH HOH . F 4 HOH B 93 593 156 HOH HOH . F 4 HOH B 94 594 35 HOH HOH . F 4 HOH B 95 595 90 HOH HOH . F 4 HOH B 96 596 149 HOH HOH . F 4 HOH B 97 597 203 HOH HOH . F 4 HOH B 98 598 151 HOH HOH . F 4 HOH B 99 599 182 HOH HOH . F 4 HOH B 100 600 147 HOH HOH . F 4 HOH B 101 601 141 HOH HOH . F 4 HOH B 102 602 84 HOH HOH . F 4 HOH B 103 603 134 HOH HOH . F 4 HOH B 104 604 121 HOH HOH . F 4 HOH B 105 605 119 HOH HOH . F 4 HOH B 106 606 108 HOH HOH . F 4 HOH B 107 607 179 HOH HOH . F 4 HOH B 108 608 190 HOH HOH . F 4 HOH B 109 609 144 HOH HOH . F 4 HOH B 110 610 113 HOH HOH . F 4 HOH B 111 611 171 HOH HOH . F 4 HOH B 112 612 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 BRL . . . C 2 20.274 64.111 17.357 1 67.65 ? S1 BRL 501 A 1 HETATM 2 O O2 BRL . . . C 2 21.139 66.305 18.237 1 55.74 ? O2 BRL 501 A 1 HETATM 3 O O4 BRL . . . C 2 18.378 63.12 20.475 1 46.85 ? O4 BRL 501 A 1 HETATM 4 O O13 BRL . . . C 2 17.406 61.688 12.074 1 56.14 ? O13 BRL 501 A 1 HETATM 5 N N3 BRL . . . C 2 20.032 64.824 19.827 1 55.39 ? N3 BRL 501 A 1 HETATM 6 N N16 BRL . . . C 2 17.623 63.615 9.636 1 50.84 ? N16 BRL 501 A 1 HETATM 7 N N18 BRL . . . C 2 16.109 65.557 9.589 1 48.2 ? N18 BRL 501 A 1 HETATM 8 C C2 BRL . . . C 2 20.592 65.273 18.443 1 55.61 ? C2 BRL 501 A 1 HETATM 9 C C4 BRL . . . C 2 18.977 63.646 19.602 1 48.22 ? C4 BRL 501 A 1 HETATM 10 C C5 BRL . . . C 2 18.899 63.365 17.996 1 53.96 ? C5 BRL 501 A 1 HETATM 11 C C6 BRL . . . C 2 18.825 61.882 17.617 1 49.26 ? C6 BRL 501 A 1 HETATM 12 C C7 BRL . . . C 2 18.454 61.818 16.125 1 54.87 ? C7 BRL 501 A 1 HETATM 13 C C8 BRL . . . C 2 17.117 61.907 15.742 1 46.89 ? C8 BRL 501 A 1 HETATM 14 C C9 BRL . . . C 2 16.749 61.866 14.406 1 49.25 ? C9 BRL 501 A 1 HETATM 15 C C10 BRL . . . C 2 17.739 61.74 13.438 1 55.71 ? C10 BRL 501 A 1 HETATM 16 C C11 BRL . . . C 2 19.077 61.652 13.818 1 54.97 ? C11 BRL 501 A 1 HETATM 17 C C12 BRL . . . C 2 19.444 61.687 15.154 1 47.74 ? C12 BRL 501 A 1 HETATM 18 C C14 BRL . . . C 2 16.514 62.667 11.631 1 48.37 ? C14 BRL 501 A 1 HETATM 19 C C15 BRL . . . C 2 16.568 62.725 10.107 1 45.04 ? C15 BRL 501 A 1 HETATM 20 C C16 BRL . . . C 2 18.945 63.058 9.436 1 44.74 ? C16 BRL 501 A 1 HETATM 21 C C17 BRL . . . C 2 17.338 65.024 9.326 1 53.47 ? C17 BRL 501 A 1 HETATM 22 C C19 BRL . . . C 2 15.83 66.854 9.3 1 45.21 ? C19 BRL 501 A 1 HETATM 23 C C20 BRL . . . C 2 16.789 67.672 8.724 1 45.47 ? C20 BRL 501 A 1 HETATM 24 C C21 BRL . . . C 2 18.016 67.141 8.457 1 43.85 ? C21 BRL 501 A 1 HETATM 25 C C22 BRL . . . C 2 18.309 65.833 8.74 1 48.12 ? C22 BRL 501 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #